RchiOBHm_Chr2g0102671

Belongs to the FPP GGPP synthase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
14181273 .. 14183453
2181 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1092 bp
ATGAGCTGTGTGAATCTGAGCTCATGGGGCCAAACCTGTTCAATGTTGAACCGATCCAGATCCCCATCTCTCCACCTCCTCCACAGCCTCAGGGCCCGACCCGTTTCCTTCGCTTCTCCGAAAGGACGCCGACCCAGTTCCGTCACGGCAATCCTGACCAAGCAGGAGACTGTGAAGGAGCAGAAAGAGGAATCCGGGAAGCCCAGTTTCAATTTCAAGACCTACATGGTGGAGAAGGCCGAGTCCGTCAACCGGGCCTTAGACGCCGCCGTTTCGCTGAAAGACCCGATTACGATCCACGAAGCGATGCGGTACTCTTTGCTCGCCGGAGGCAAACGGGTCCGACCCGTTCTGTGTGTCGCCGCGTGCGAGCTCGTCGGAGGTTCTGAGTCCCTCGCCATGCCGGCGGCCTGCGCCGTCGAGATGATCCACACCATGTCGTTGATCCACGACGACTTGCCGTGCATGGATAACGACGACCTCCGCCGCGGGAAGCCCACCAACCACAAGGTTTTCGGCGAAGACGTCGCCGTTTTGGCCGGCGATGCGCTTCTATCATTCGCGTTCGAGCACCTCGCCGTCTCCACCGTCGGCGTGGAGCCTTCTAGAATCGTCCGAGCCGTGGAGGAGCTTGCCCGGTCAATCGGGTCGGAGGGATTGGTGGCGGGTCAAGTCGTGGATATCCACTCGGAGGGGTTATCCGATGTGGGACTGGAGCACCTGGAGTACATACACCTCCACAAAACGGCGGCTCTTCTTGAATGTGCAGTTGTTCTCGGGTCGATTTTGGGAGGCGGGTCGGACTCGGAAATCGAAAAGCTCCGGACTTTTGCGAGGTACATTGGGCTGTTGTTTCAAGTTGTGGATGACATTCTGGATGTGACGAAGTCTTCACAGGAATTGGGGAAGACTGCTGGGAAGGACTTGGTGGCTGATAAGGTGACTTATCCTAAGCTAATGGGGATTGAGAAATCGAAGGAATTTGCGGAGAAACTTAATAGGGATGCACAAGAACAGCTCGTCGGATTCGACCAGGAAAAGGCTGCTCCTTTGATTGCTTTGGCTAATTACATTGCTTACAGGCAAAATTGA

Protein Analysis

363

Amino Acids

39.4

Weight (kDa)

6.03

Isoelectric Point (pI)

51.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
polyprenyl_synt PF00348 99 - 333 4.2e-60 Polyprenyl synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36810
fragaria_vesca FvH4_1g14070
malus_domestica MD02G1154400.v1.1
prunus_persica Prupe.7G148600_v2.0.a1
pyrus_communis pycom02g12210
rosa_chinensis RchiOBHm_Chr2g0102671
rosa_laevigata RLG00000017165
rosa_multiflora Rmu_sc0008034.1_g000005
rosa_roxburghii Rroxscaffold_2G00140400
rosa_rugosa Rorug02G0108600
rosa_samantha Rh2AG157400 Rh2BG163700 Rh2CG162900 Rh2DG162600
rosa_wichuraiana Rw2G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 528
AccII CGCG 3 cut(s) 365, 489, 563
AccIII TCCGGA 1 cut(s) 822
AclWI GGATC 5 cut(s) 48, 54, 289, 421, 439
AcoI YGGCCR 1 cut(s) 537
AcsI RAATTY 1 cut(s) 980
AcyI GRCGYC 3 cut(s) 127, 264, 525
AfaI GTAC 3 cut(s) 314, 728, 839
AfiI CCNNNNNNNGG 5 cut(s) 252, 622, 691, 745, 1039
AgsI TTSAA 6 cut(s) 42, 49, 211, 217, 761, 857
AjnI CCWGG 2 cut(s) 720, 1032
AluBI AGCT 7 cut(s) 6, 21, 373, 631, 820, 955, 1018
AluI AGCT 7 cut(s) 6, 21, 373, 631, 820, 955, 1018
Alw21I GWGCWC 4 cut(s) 23, 375, 573, 720
Alw26I GTCTC 2 cut(s) 161, 586
AlwI GGATC 5 cut(s) 48, 54, 289, 421, 439
Ama87I CYCGRG 1 cut(s) 776
Aor13HI TCCGGA 1 cut(s) 822
AoxI GGCC 6 cut(s) 28, 93, 237, 255, 408, 537
ApaI GGGCCC 1 cut(s) 97
ApeKI GCWGC 1 cut(s) 1043
ApoI RAATTY 1 cut(s) 980
AspLEI GCGC 2 cut(s) 416, 550
AspS9I GGNCC 5 cut(s) 28, 93, 94, 255, 340
AsuC2I CCSGG 3 cut(s) 196, 254, 637
AsuHPI GGTGA 1 cut(s) 952
AvaI CYCGRG 1 cut(s) 776
AvaII GGWCC 1 cut(s) 340
AxyI CCTNAGG 1 cut(s) 89
BaeGI GKGCMC 1 cut(s) 97
BanII GRGCYC 3 cut(s) 23, 97, 375
BbsI GAAGAC 3 cut(s) 528, 882, 914
Bbv12I GWGCWC 4 cut(s) 23, 375, 573, 720
BbvI GCAGC 1 cut(s) 1030
BccI CCATC 1 cut(s) 73
BceAI ACGGC 8 cut(s) 162, 254, 401, 445, 515, 563, 605, 762
BciT130I CCWGG 2 cut(s) 722, 1034
BcnI CCSGG 3 cut(s) 196, 254, 637
BcoDI GTCTC 2 cut(s) 161, 586
BfaI CTAG 1 cut(s) 606
BglI GCCNNNNNGGC 2 cut(s) 404, 536
BisI GCNGC 6 cut(s) 267, 363, 408, 487, 750, 1044
BlsI GCNGC 6 cut(s) 268, 364, 409, 488, 751, 1045
Bme1390I CCNGG 5 cut(s) 196, 254, 637, 722, 1034
Bme18I GGWCC 1 cut(s) 340
BmeT110I CYCGRG 1 cut(s) 776
BmgT120I GGNCC 5 cut(s) 28, 93, 94, 255, 340
BmiI GGNNCC 4 cut(s) 29, 95, 341, 600
BmrFI CCNGG 5 cut(s) 196, 254, 637, 722, 1034
BmrI ACTGGG 2 cut(s) 129, 198
BmsI GCATC 3 cut(s) 297, 535, 994
BmuI ACTGGG 2 cut(s) 129, 198
BpiI GAAGAC 3 cut(s) 528, 882, 914
BpmI CTGGAG 2 cut(s) 734, 743
Bpu10I CCTNAGC 1 cut(s) 951
BpuMI CCSGG 3 cut(s) 196, 254, 637
BsaBI GATNNNNATC 3 cut(s) 58, 64, 293
BsaHI GRCGYC 3 cut(s) 127, 264, 525
BsaJI CCNNGG 2 cut(s) 487, 621
BsaWI WCCGGW 1 cut(s) 822
Bsc4I CCNNNNNNNGG 5 cut(s) 252, 622, 691, 745, 1039
Bse118I RCCGGY 2 cut(s) 403, 539
Bse1I ACTGG 3 cut(s) 135, 204, 717
Bse21I CCTNAGG 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 1071
Bse8I GATNNNNATC 3 cut(s) 58, 64, 293
BseAI TCCGGA 1 cut(s) 822
BseBI CCWGG 2 cut(s) 722, 1034
BseDI CCNNGG 2 cut(s) 487, 621
BseGI GGATG 3 cut(s) 871, 883, 1009
BseJI GATNNNNATC 3 cut(s) 58, 64, 293
BseLI CCNNNNNNNGG 5 cut(s) 252, 622, 691, 745, 1039
BseMI GCAATG 1 cut(s) 1071
BseMII CTCAG 3 cut(s) 8, 103, 378
BseNI ACTGG 3 cut(s) 135, 204, 717
BseRI GAGGAG 2 cut(s) 68, 641
BseSI GKGCMC 1 cut(s) 97
BseXI GCAGC 1 cut(s) 1030
BseYI CCCAGC 1 cut(s) 914
BsgI GTGCAG 1 cut(s) 786
Bsh1236I CGCG 3 cut(s) 365, 489, 563
BshFI GGCC 6 cut(s) 30, 95, 239, 257, 410, 539
BsiHKAI GWGCWC 4 cut(s) 23, 375, 573, 720
BsiHKCI CYCGRG 1 cut(s) 776
BsiSI CCGG 7 cut(s) 195, 253, 327, 404, 540, 637, 823
BslFI GGGAC 2 cut(s) 376, 723
BslI CCNNNNNNNGG 5 cut(s) 252, 622, 691, 745, 1039
BsmAI GTCTC 2 cut(s) 161, 586
BsmBI CGTCTC 1 cut(s) 586
BsmFI GGGAC 2 cut(s) 376, 723
BsnI GGCC 6 cut(s) 30, 95, 239, 257, 410, 539
BsoBI CYCGRG 1 cut(s) 776
Bsp120I GGGCCC 1 cut(s) 93
Bsp1286I GDGCHC 5 cut(s) 23, 97, 375, 573, 720
Bsp13I TCCGGA 1 cut(s) 822
Bsp143I GATC 5 cut(s) 53, 59, 294, 426, 444
BspANI GGCC 6 cut(s) 30, 95, 239, 257, 410, 539
BspCNI CTCAG 3 cut(s) 9, 102, 379
BspEI TCCGGA 1 cut(s) 822
BspFNI CGCG 3 cut(s) 365, 489, 563
BspLI GGNNCC 4 cut(s) 29, 95, 341, 600
BspPI GGATC 5 cut(s) 48, 54, 289, 421, 439
BspQI GCTCTTC 1 cut(s) 759
BsrDI GCAATG 1 cut(s) 1071
BsrFI RCCGGY 2 cut(s) 403, 539
BsrI ACTGG 3 cut(s) 135, 204, 717
BssAI RCCGGY 2 cut(s) 403, 539
BssECI CCNNGG 2 cut(s) 487, 621
BssMI GATC 5 cut(s) 53, 59, 294, 426, 444
BssNI GRCGYC 3 cut(s) 127, 264, 525
Bst2UI CCWGG 2 cut(s) 722, 1034
Bst4CI ACNGT 2 cut(s) 172, 589
Bst6I CTCTTC 1 cut(s) 759
BstACI GRCGYC 3 cut(s) 127, 264, 525
BstC8I GCNNGC 7 cut(s) 324, 367, 371, 405, 412, 541, 633
BstDEI CTNAG 5 cut(s) 17, 89, 259, 387, 951
BstDSI CCRYGG 2 cut(s) 487, 621
BstF5I GGATG 3 cut(s) 871, 883, 1009
BstFNI CGCG 3 cut(s) 365, 489, 563
BstHHI GCGC 2 cut(s) 416, 550
BstKTI GATC 5 cut(s) 56, 62, 297, 429, 447
BstMAI GTCTC 2 cut(s) 161, 586
BstMBI GATC 5 cut(s) 53, 59, 294, 426, 444
BstMWI GCNNNNNNNGC 6 cut(s) 27, 263, 404, 413, 536, 545
BstNI CCWGG 2 cut(s) 722, 1034
BstSCI CCNGG 5 cut(s) 194, 252, 635, 720, 1032
BstSLI GKGCMC 1 cut(s) 97
BstUI CGCG 3 cut(s) 365, 489, 563
BstV1I GCAGC 1 cut(s) 1030
BstV2I GAAGAC 3 cut(s) 528, 882, 914
BstX2I RGATCY 1 cut(s) 59
BstYI RGATCY 1 cut(s) 59
Bsu36I CCTNAGG 1 cut(s) 89
BsuRI GGCC 6 cut(s) 30, 95, 239, 257, 410, 539
BtgI CCRYGG 2 cut(s) 487, 621
BtgZI GCGATG 2 cut(s) 320, 558
BtsCI GGATG 3 cut(s) 871, 883, 1009
Cac8I GCNNGC 7 cut(s) 324, 367, 371, 405, 412, 541, 633
CfoI GCGC 2 cut(s) 416, 550
Cfr10I RCCGGY 2 cut(s) 403, 539
Cfr13I GGNCC 5 cut(s) 28, 93, 94, 255, 340
Cfr42I CCGCGG 1 cut(s) 490
CseI GACGC 2 cut(s) 135, 272
Csp6I GTAC 3 cut(s) 313, 727, 838
CviAII CATG 5 cut(s) 24, 226, 400, 436, 466
CviQI GTAC 3 cut(s) 313, 727, 838
DdeI CTNAG 5 cut(s) 17, 89, 259, 387, 951
DpnI GATC 5 cut(s) 55, 61, 296, 428, 446
DpnII GATC 5 cut(s) 53, 59, 294, 426, 444
EaeI YGGCCR 1 cut(s) 537
Eam1104I CTCTTC 1 cut(s) 759
EarI CTCTTC 1 cut(s) 759
EciI GGCGGA 1 cut(s) 473
Ecl136II GAGCTC 2 cut(s) 21, 373
Eco24I GRGCYC 3 cut(s) 23, 97, 375
Eco32I GATATC 1 cut(s) 682
Eco47I GGWCC 1 cut(s) 340
Eco53kI GAGCTC 2 cut(s) 21, 373
Eco81I CCTNAGG 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 776
EcoICRI GAGCTC 2 cut(s) 21, 373
EcoO109I RGGNCCY 1 cut(s) 93
EcoRII CCWGG 2 cut(s) 720, 1032
EcoRV GATATC 1 cut(s) 682
EcoT38I GRGCYC 3 cut(s) 23, 97, 375
Esp3I CGTCTC 1 cut(s) 586
FaeI CATG 5 cut(s) 27, 229, 403, 439, 469
FaiI YATR 6 cut(s) 25, 227, 401, 437, 467, 731
FaqI GGGAC 2 cut(s) 376, 723
FatI CATG 5 cut(s) 23, 225, 399, 435, 465
FauI CCCGC 3 cut(s) 482, 658, 788
Fnu4HI GCNGC 6 cut(s) 267, 363, 408, 487, 750, 1044
FokI GGATG 3 cut(s) 878, 890, 1016
FriOI GRGCYC 3 cut(s) 23, 97, 375
Fsp4HI GCNGC 6 cut(s) 267, 363, 408, 487, 750, 1044
FspBI CTAG 1 cut(s) 606
GlaI GCGC 2 cut(s) 415, 549
GluI GCNGC 6 cut(s) 267, 363, 408, 487, 750, 1044
GsaI CCCAGC 1 cut(s) 918
GsuI CTGGAG 2 cut(s) 734, 743
HaeIII GGCC 6 cut(s) 30, 95, 239, 257, 410, 539
HapII CCGG 7 cut(s) 195, 253, 327, 404, 540, 637, 823
HgaI GACGC 2 cut(s) 135, 272
HhaI GCGC 2 cut(s) 416, 550
Hin1I GRCGYC 3 cut(s) 127, 264, 525
Hin1II CATG 5 cut(s) 27, 229, 403, 439, 469
Hin6I GCGC 2 cut(s) 414, 548
HinP1I GCGC 2 cut(s) 414, 548
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 7 cut(s) 13, 191, 242, 389, 609, 803, 1026
HpaII CCGG 7 cut(s) 195, 253, 327, 404, 540, 637, 823
HphI GGTGA 1 cut(s) 952
Hpy166II GTNNAC 1 cut(s) 250
Hpy188III TCNNGA 8 cut(s) 57, 154, 217, 421, 606, 758, 823, 875
Hpy8I GTNNAC 1 cut(s) 250
Hpy99I CGWCG 7 cut(s) 380, 422, 455, 479, 530, 593, 1025
HpyAV CCTTC 6 cut(s) 118, 169, 229, 612, 913, 970
HpyCH4III ACNGT 2 cut(s) 172, 589
HpyCH4IV ACGT 1 cut(s) 525
HpyCH4V TGCA 3 cut(s) 465, 767, 1007
HpyF10VI GCNNNNNNNGC 6 cut(s) 27, 263, 404, 413, 536, 545
HpyF3I CTNAG 5 cut(s) 17, 89, 259, 387, 951
HpySE526I ACGT 1 cut(s) 525
Hsp92I GRCGYC 3 cut(s) 127, 264, 525
Hsp92II CATG 5 cut(s) 27, 229, 403, 439, 469
HspAI GCGC 2 cut(s) 414, 548
Kpn2I TCCGGA 1 cut(s) 822
KroI GCCGGC 2 cut(s) 403, 539
KroNI GCCGGC 2 cut(s) 405, 541
KspI CCGCGG 1 cut(s) 490
Kzo9I GATC 5 cut(s) 53, 59, 294, 426, 444
LguI GCTCTTC 1 cut(s) 759
LmnI GCTCC 6 cut(s) 178, 598, 628, 715, 825, 1051
Lsp1109I GCAGC 1 cut(s) 1030
LweI GCATC 3 cut(s) 297, 535, 994
MaeI CTAG 1 cut(s) 606
MaeII ACGT 1 cut(s) 525
MaeIII GTNAC 3 cut(s) 142, 880, 940
MalI GATC 5 cut(s) 55, 61, 296, 428, 446
MboI GATC 5 cut(s) 53, 59, 294, 426, 444
MboII GAAGA 4 cut(s) 533, 746, 882, 919
MflI RGATCY 1 cut(s) 59
MhlI GDGCHC 5 cut(s) 23, 97, 375, 573, 720
MluCI AATT 5 cut(s) 211, 899, 980, 1066, 1087
MlyI GAGTC 3 cut(s) 251, 398, 797
MmeI TCCRAC 5 cut(s) 358, 367, 630, 780, 1003
MroI TCCGGA 1 cut(s) 822
MroNI GCCGGC 2 cut(s) 403, 539
MseI TTAA 1 cut(s) 996
MspA1I CMGCKG 1 cut(s) 489
MspI CCGG 7 cut(s) 195, 253, 327, 404, 540, 637, 823
MspR9I CCNGG 5 cut(s) 196, 254, 637, 722, 1034
MvaI CCWGG 2 cut(s) 722, 1034
MvnI CGCG 3 cut(s) 365, 489, 563
MwoI GCNNNNNNNGC 6 cut(s) 27, 263, 404, 413, 536, 545
NaeI GCCGGC 2 cut(s) 405, 541
NciI CCSGG 3 cut(s) 196, 254, 637
NdeII GATC 5 cut(s) 53, 59, 294, 426, 444
NgoMIV GCCGGC 2 cut(s) 403, 539
NlaIII CATG 5 cut(s) 27, 229, 403, 439, 469
NlaIV GGNNCC 4 cut(s) 29, 95, 341, 600
NmeAIII GCCGAG 1 cut(s) 265
NmuCI GTSAC 3 cut(s) 142, 880, 940
PciSI GCTCTTC 1 cut(s) 759
PcsI WCGNNNNNNNCGW 4 cut(s) 366, 522, 618, 1026
PdiI GCCGGC 2 cut(s) 405, 541
PfeI GAWTC 4 cut(s) 13, 191, 609, 1026
PflFI GACNNNGTC 1 cut(s) 886
PfoI TCCNGGA 1 cut(s) 194
PkrI GCNGC 6 cut(s) 268, 364, 409, 488, 751, 1045
PleI GAGTC 3 cut(s) 250, 397, 797
PpsI GAGTC 3 cut(s) 250, 397, 797
Psp124BI GAGCTC 2 cut(s) 23, 375
Psp6I CCWGG 2 cut(s) 720, 1032
PspFI CCCAGC 1 cut(s) 914
PspGI CCWGG 2 cut(s) 720, 1032
PspN4I GGNNCC 4 cut(s) 29, 95, 341, 600
PspOMI GGGCCC 1 cut(s) 93
PspPI GGNCC 5 cut(s) 28, 93, 94, 255, 340
PsuI RGATCY 1 cut(s) 59
PsyI GACNNNGTC 1 cut(s) 886
RsaI GTAC 3 cut(s) 314, 728, 839
RsaNI GTAC 3 cut(s) 313, 727, 838
SacI GAGCTC 2 cut(s) 23, 375
SacII CCGCGG 1 cut(s) 490
SapI GCTCTTC 1 cut(s) 759
SaqAI TTAA 1 cut(s) 996
SatI GCNGC 6 cut(s) 267, 363, 408, 487, 750, 1044
Sau3AI GATC 5 cut(s) 53, 59, 294, 426, 444
Sau96I GGNCC 5 cut(s) 28, 93, 94, 255, 340
SchI GAGTC 3 cut(s) 251, 398, 797
ScrFI CCNGG 5 cut(s) 196, 254, 637, 722, 1034
SduI GDGCHC 5 cut(s) 23, 97, 375, 573, 720
SfaNI GCATC 3 cut(s) 297, 535, 994
Sfr303I CCGCGG 1 cut(s) 490
SgrBI CCGCGG 1 cut(s) 490
SinI GGWCC 1 cut(s) 340
Sse9I AATT 5 cut(s) 211, 899, 980, 1066, 1087
SspMI CTAG 1 cut(s) 606
SstI GAGCTC 2 cut(s) 23, 375
StyD4I CCNGG 5 cut(s) 194, 252, 635, 720, 1032
TaaI ACNGT 2 cut(s) 172, 589
TaiI ACGT 1 cut(s) 528
TaqI TCGA 6 cut(s) 420, 567, 782, 813, 974, 1029
TasI AATT 5 cut(s) 211, 899, 980, 1066, 1087
TatI WGTACW 1 cut(s) 726
TauI GCSGC 5 cut(s) 269, 365, 410, 489, 752
TfiI GAWTC 4 cut(s) 13, 191, 609, 1026
Tru1I TTAA 1 cut(s) 996
Tru9I TTAA 1 cut(s) 996
TseFI GTSAC 3 cut(s) 142, 880, 940
TseI GCWGC 1 cut(s) 1043
Tsp45I GTSAC 3 cut(s) 142, 880, 940
TspGWI ACGGA 2 cut(s) 130, 235
Tth111I GACNNNGTC 1 cut(s) 886
VpaK11BI GGWCC 1 cut(s) 340
XapI RAATTY 1 cut(s) 980
XbaI TCTAGA 1 cut(s) 605
XcmI CCANNNNNNNNNTGG 1 cut(s) 592
XspI CTAG 1 cut(s) 606
ZraI GACGTC 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.