RchiOBHm_Chr2g0119191

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017958
Physical Location & Seq
Forward (+)
31458179 .. 31459334
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 573 bp
ATGGCAGACTACGAAACCCACCACCACCATTCCTCGATCCCCAAAGAGACTGCCCTCCAAGCCCTCAACACCATCATCCAGCTCCACTTCGAGAAGACCCTCGAGAAGAAACGATCCATCGACCTCCAAAAGAAGGAGCTCCAGAAGCTCTTCCAGTTCTTCTTCCTCTTCCTCGCCCTCGTCTTCCTCGCCCAGGCTCAGCCCTCCCGCCTCCAATGCCGCCACTGCTGGGTCCCCATCGTCCTCCTCTCCCTCGCCCACCTCATCTTCTACGTCTCCGTCGCCCAGACCCTCCGCTGCATCAATGGCTTTAAGTACCAGAGGCGCTGCCACAAGCTGACGCTCGGCTTGGCCACCGAGAAGCTGAGGGAGATGAAGATGAGGCTCGGCGCCAACGGCGGTGGAGGGCATGAGTTTGATGGGATAGGGGACAATGAGTTCGAGATTCATTATCAGGAGCCACCCGAGAGTTATTTTGGCAAGTTCAAGAGGAACTGGGCTCTGCATTTCGGCTTCTTGATCGTCATCTATGGGTTCATGGTGGCTTCTTCTGTTGTTCTGCTCTGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

22.08

Weight (kDa)

9.11

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017958)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18800
fragaria_vesca FvH4_1g23610
malus_domestica MD01G1016600.v1.1
prunus_persica Prupe.6G162500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0119191
rosa_laevigata RLG00000018450
rosa_multiflora Rmu_sc0000184.1_g000011
rosa_roxburghii Rroxscaffold_2G00124460
rosa_rugosa Rorug02G0220800
rosa_samantha Rh2AG278700
rosa_wichuraiana Rw2G022150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 389
AciI CCGC 4 cut(s) 208, 220, 295, 399
AclWI GGATC 2 cut(s) 31, 108
AcoI YGGCCR 1 cut(s) 351
AcyI GRCGYC 1 cut(s) 390
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 3 cut(s) 133, 193, 229
AgsI TTSAA 1 cut(s) 487
AjnI CCWGG 1 cut(s) 192
AloI GAACNNNNNNTCC 2 cut(s) 422, 454
AluBI AGCT 5 cut(s) 82, 139, 148, 337, 364
AluI AGCT 5 cut(s) 82, 139, 148, 337, 364
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 2 cut(s) 41, 280
AlwI GGATC 2 cut(s) 31, 108
Ama87I CYCGRG 2 cut(s) 101, 464
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 2 cut(s) 297, 327
ArsI GACNNNNNNTTYG 2 cut(s) 422, 454
Asp700I GAANNNNTTC 1 cut(s) 149
AspLEI GCGC 2 cut(s) 327, 392
AspS9I GGNCC 1 cut(s) 232
AvaI CYCGRG 2 cut(s) 101, 464
AvaII GGWCC 1 cut(s) 232
BalI TGGCCA 1 cut(s) 353
BanI GGYRCC 1 cut(s) 389
BanII GRGCYC 2 cut(s) 141, 502
BbsI GAAGAC 2 cut(s) 101, 175
Bbv12I GWGCWC 1 cut(s) 141
BbvCI CCTCAGC 1 cut(s) 365
BbvI GCAGC 2 cut(s) 284, 314
BccI CCATC 4 cut(s) 80, 125, 245, 413
BceAI ACGGC 1 cut(s) 412
BciT130I CCWGG 1 cut(s) 194
BcoDI GTCTC 2 cut(s) 41, 280
BfoI RGCGCY 2 cut(s) 328, 393
BisI GCNGC 3 cut(s) 220, 298, 328
BlpI GCTNAGC 1 cut(s) 198
BlsI GCNGC 3 cut(s) 221, 299, 329
Bme1390I CCNGG 1 cut(s) 194
Bme18I GGWCC 1 cut(s) 232
BmeT110I CYCGRG 2 cut(s) 101, 464
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 4 cut(s) 233, 234, 391, 459
BmrFI CCNGG 1 cut(s) 194
BmrI ACTGGG 1 cut(s) 505
BmsI GCATC 1 cut(s) 309
BmuI ACTGGG 1 cut(s) 505
BpiI GAAGAC 2 cut(s) 101, 175
BpmI CTGGAG 1 cut(s) 125
Bpu10I CCTNAGC 1 cut(s) 365
Bpu1102I GCTNAGC 1 cut(s) 198
BsaBI GATNNNNATC 1 cut(s) 524
BsaHI GRCGYC 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 193, 229
Bse1I ACTGG 2 cut(s) 154, 500
Bse8I GATNNNNATC 1 cut(s) 524
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 75
BseJI GATNNNNATC 1 cut(s) 524
BseLI CCNNNNNNNGG 3 cut(s) 133, 193, 229
BseMII CTCAG 2 cut(s) 212, 356
BseNI ACTGG 2 cut(s) 154, 500
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 2 cut(s) 284, 314
BseYI CCCAGC 1 cut(s) 228
BshFI GGCC 1 cut(s) 353
BshNI GGYRCC 1 cut(s) 389
BsiHKAI GWGCWC 1 cut(s) 141
BsiHKCI CYCGRG 2 cut(s) 101, 464
BslFI GGGAC 2 cut(s) 218, 443
BslI CCNNNNNNNGG 3 cut(s) 133, 193, 229
BsmAI GTCTC 2 cut(s) 41, 280
BsmBI CGTCTC 1 cut(s) 280
BsmFI GGGAC 2 cut(s) 218, 443
BsnI GGCC 1 cut(s) 353
BsoBI CYCGRG 2 cut(s) 101, 464
Bsp1286I GDGCHC 2 cut(s) 141, 502
Bsp143I GATC 3 cut(s) 36, 113, 519
Bsp1720I GCTNAGC 1 cut(s) 198
BspACI CCGC 4 cut(s) 208, 220, 295, 399
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 2 cut(s) 211, 357
BspLI GGNNCC 4 cut(s) 233, 234, 391, 459
BspPI GGATC 2 cut(s) 31, 108
BspQI GCTCTTC 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 389
BsrI ACTGG 2 cut(s) 154, 500
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 3 cut(s) 36, 113, 519
BssNI GRCGYC 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 194
Bst6I CTCTTC 2 cut(s) 155, 173
BstACI GRCGYC 1 cut(s) 390
BstDEI CTNAG 2 cut(s) 198, 365
BstENI CCTNNNNNAGG 1 cut(s) 191
BstF5I GGATG 1 cut(s) 75
BstH2I RGCGCY 2 cut(s) 328, 393
BstHHI GCGC 2 cut(s) 327, 392
BstKTI GATC 3 cut(s) 39, 116, 522
BstMAI GTCTC 2 cut(s) 41, 280
BstMBI GATC 3 cut(s) 36, 113, 519
BstMWI GCNNNNNNNGC 6 cut(s) 59, 145, 216, 225, 306, 396
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 192
BstV1I GCAGC 2 cut(s) 284, 314
BstV2I GAAGAC 2 cut(s) 101, 175
BsuRI GGCC 1 cut(s) 353
BtsCI GGATG 1 cut(s) 75
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 223
CfoI GCGC 2 cut(s) 327, 392
Cfr13I GGNCC 1 cut(s) 232
CseI GACGC 1 cut(s) 349
Csp6I GTAC 1 cut(s) 316
CspCI CAANNNNNGTGG 2 cut(s) 382, 417
CviAII CATG 2 cut(s) 410, 538
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 2 cut(s) 198, 365
DinI GGCGCC 1 cut(s) 391
DpnI GATC 3 cut(s) 38, 115, 521
DpnII GATC 3 cut(s) 36, 113, 519
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 2 cut(s) 155, 173
EarI CTCTTC 2 cut(s) 155, 173
Ecl136II GAGCTC 1 cut(s) 139
Eco24I GRGCYC 2 cut(s) 141, 502
Eco47I GGWCC 1 cut(s) 232
Eco53kI GAGCTC 1 cut(s) 139
Eco88I CYCGRG 2 cut(s) 101, 464
EcoICRI GAGCTC 1 cut(s) 139
EcoNI CCTNNNNNAGG 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 192
EcoT38I GRGCYC 2 cut(s) 141, 502
EgeI GGCGCC 1 cut(s) 391
EheI GGCGCC 1 cut(s) 391
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 2 cut(s) 413, 541
FaiI YATR 3 cut(s) 411, 531, 539
FaqI GGGAC 2 cut(s) 218, 443
FatI CATG 2 cut(s) 409, 537
FauI CCCGC 1 cut(s) 215
Fnu4HI GCNGC 3 cut(s) 220, 298, 328
FokI GGATG 1 cut(s) 62
FriOI GRGCYC 2 cut(s) 141, 502
Fsp4HI GCNGC 3 cut(s) 220, 298, 328
GlaI GCGC 2 cut(s) 326, 391
GluI GCNGC 3 cut(s) 220, 298, 328
GsaI CCCAGC 1 cut(s) 232
GsuI CTGGAG 1 cut(s) 125
HaeII RGCGCY 2 cut(s) 328, 393
HaeIII GGCC 1 cut(s) 353
HgaI GACGC 1 cut(s) 349
HhaI GCGC 2 cut(s) 327, 392
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 2 cut(s) 413, 541
Hin6I GCGC 2 cut(s) 325, 390
HinP1I GCGC 2 cut(s) 325, 390
HinfI GANTC 1 cut(s) 445
Hpy188III TCNNGA 7 cut(s) 91, 103, 142, 442, 455, 487, 517
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 2 cut(s) 300, 505
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 145, 216, 225, 306, 396
HpyF3I CTNAG 2 cut(s) 198, 365
HpySE526I ACGT 1 cut(s) 273
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 2 cut(s) 413, 541
HspAI GCGC 2 cut(s) 325, 390
KasI GGCGCC 1 cut(s) 389
KflI GGGWCCC 1 cut(s) 232
Kzo9I GATC 3 cut(s) 36, 113, 519
LguI GCTCTTC 1 cut(s) 155
LmnI GCTCC 4 cut(s) 87, 136, 144, 457
Lsp1109I GCAGC 2 cut(s) 284, 314
LweI GCATC 1 cut(s) 309
MaeII ACGT 1 cut(s) 273
MalI GATC 3 cut(s) 38, 115, 521
MboI GATC 3 cut(s) 36, 113, 519
MhlI GDGCHC 2 cut(s) 141, 502
MlsI TGGCCA 1 cut(s) 353
MluNI TGGCCA 1 cut(s) 353
Mly113I GGCGCC 1 cut(s) 390
Mox20I TGGCCA 1 cut(s) 353
MroXI GAANNNNTTC 1 cut(s) 149
MscI TGGCCA 1 cut(s) 353
MseI TTAA 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 353
MspA1I CMGCKG 1 cut(s) 297
MspR9I CCNGG 1 cut(s) 194
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 6 cut(s) 59, 145, 216, 225, 306, 396
NarI GGCGCC 1 cut(s) 390
NdeII GATC 3 cut(s) 36, 113, 519
NlaIII CATG 2 cut(s) 413, 541
NlaIV GGNNCC 4 cut(s) 233, 234, 391, 459
NmeAIII GCCGAG 2 cut(s) 324, 366
PaeR7I CTCGAG 1 cut(s) 101
PciSI GCTCTTC 1 cut(s) 155
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 445
PkrI GCNGC 3 cut(s) 221, 299, 329
PluTI GGCGCC 1 cut(s) 393
PpuMI RGGWCCY 1 cut(s) 232
Psp124BI GAGCTC 1 cut(s) 141
Psp5II RGGWCCY 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 192
PspFI CCCAGC 1 cut(s) 228
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 4 cut(s) 233, 234, 391, 459
PspPI GGNCC 1 cut(s) 232
PspPPI RGGWCCY 1 cut(s) 232
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SacI GAGCTC 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 3 cut(s) 220, 298, 328
Sau3AI GATC 3 cut(s) 36, 113, 519
Sau96I GGNCC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 2 cut(s) 141, 502
SetI ASST 8 cut(s) 84, 126, 141, 150, 264, 276, 339, 366
SfaNI GCATC 1 cut(s) 309
SfoI GGCGCC 1 cut(s) 391
Sfr274I CTCGAG 1 cut(s) 101
SinI GGWCC 1 cut(s) 232
SlaI CTCGAG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
SsiI CCGC 4 cut(s) 208, 220, 295, 399
SspDI GGCGCC 1 cut(s) 389
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 192
TaiI ACGT 1 cut(s) 276
TaqI TCGA 5 cut(s) 35, 90, 102, 120, 441
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 1 cut(s) 445
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 1 cut(s) 230
TseI GCWGC 2 cut(s) 297, 327
TspDTI ATGAA 3 cut(s) 389, 437, 526
TspGWI ACGGA 1 cut(s) 268
TspRI CASTG 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 232
XagI CCTNNNNNAGG 1 cut(s) 191
XhoI CTCGAG 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.