Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021346

Physical Location & Seq

Genomic Coordinates Reverse (-)

63822332 .. 63826004

Gene Structure 3673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGTTCTATTGAGAAGGCCAAAGTTGCGTCTGATCTTGGCATGGACTCCAAATAATGATGGACAGGTGATACGGTTGACCCTGCGTCAACTCACATCAGATAGACGGAAGGCATTGACAAAAGTTGTATCAAAACAAGCCGAAGAAGGGAAGGTGGCATTGAGGAACATAAGAAGGGATGCTTTAAAAGCTTATGAAAAACTTCAGAAGGAAAAGAAGCTCTCTGAGGATACTCTCAAGGACTTTTCAAGTGATTTGCAGAAATGGACAGATGAGTATGTGAAGAAACTTGATACCATATCCAAACAGAAAGAGAAGGAATTGCTGAAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002181 GO:0002184 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0022414 GO:0032501 GO:0032502 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0042742 GO:0043021 GO:0043023 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045087 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0071840 GO:0098542 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRF

Protein Analysis

111

Amino Acids

13.08

Weight (kDa)

10.08

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRF	PF01765	13 - 109	5.1e-31	Ribosome recycling factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146101
rosa_laevigata	RLG00000027929 RLG00000036315
rosa_samantha	Rh4BG058700
rosa_wichuraiana	Rw5G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	249
AhdI	GACNNNNNGTC	1 cut(s)	84
AluBI	AGCT	2 cut(s)	191, 220
AluI	AGCT	2 cut(s)	191, 220
AoxI	GGCC	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	79
BccI	CCATC	1 cut(s)	53
BciVI	GTATCC	1 cut(s)	223
BfuI	GTATCC	1 cut(s)	223
BmeRI	GACNNNNNGTC	1 cut(s)	84
BmsI	GCATC	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	147
BsnI	GGCC	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	33
BspANI	GGCC	1 cut(s)	19
BspCNI	CTCAG	1 cut(s)	217
BssMI	GATC	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 188
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	184
CseI	GACGC	2 cut(s)	17, 74
CviAII	CATG	1 cut(s)	42
CviJI	RGCY	4 cut(s)	19, 140, 191, 220
CviKI_1	RGCY	4 cut(s)	19, 140, 191, 220
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
DraI	TTTAAA	1 cut(s)	186
DriI	GACNNNNNGTC	1 cut(s)	84
Eam1105I	GACNNNNNGTC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	188
FaeI	CATG	1 cut(s)	45
FaiI	YATR	5 cut(s)	43, 170, 195, 279, 299
FalI	AAGNNNNNCTT	2 cut(s)	166, 198
FatI	CATG	1 cut(s)	41
FokI	GGATG	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	19
HgaI	GACGC	2 cut(s)	17, 74
Hin1II	CATG	1 cut(s)	45
HincII	GTYRAC	2 cut(s)	78, 89
HindII	GTYRAC	2 cut(s)	78, 89
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	1 cut(s)	46
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	2 cut(s)	78, 89
Hpy188I	TCNGA	4 cut(s)	33, 100, 207, 226
Hpy8I	GTNNAC	2 cut(s)	78, 89
HpyAV	CCTTC	8 cut(s)	9, 103, 140, 145, 168, 202, 310, 322
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 188
HpyF3I	CTNAG	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	45
Kzo9I	GATC	1 cut(s)	33
LpnPI	CCDG	2 cut(s)	50, 95
LweI	GCATC	1 cut(s)	169
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	2 cut(s)	155, 295
MluCI	AATT	1 cut(s)	320
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	2 cut(s)	156, 220
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	1 cut(s)	185
MwoI	GCNNNNNNNGC	2 cut(s)	25, 188
NdeII	GATC	1 cut(s)	33
NlaIII	CATG	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	201
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	185
Sau3AI	GATC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	40
SetI	ASST	5 cut(s)	69, 156, 193, 222, 333
SfaNI	GCATC	1 cut(s)	169
SgeI	CNNG	8 cut(s)	49, 54, 77, 94, 149, 250, 261, 302
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	1 cut(s)	320
TaaI	ACNGT	1 cut(s)	75
TasI	AATT	1 cut(s)	320
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TspDTI	ATGAA	1 cut(s)	210
TspGWI	ACGGA	1 cut(s)	121
XmnI	GAANNNNTTC	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.