Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0021346

Physical Location & Seq

Genomic Coordinates Forward (+)

10477330 .. 10479648

Gene Structure 2319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG058700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCGACCCATTTCTCTCCTGCGACTCCTGCACGGTCCATCCTCCAACCGAAGCTAAACCCTCCCCAAGCCCTCCTCTCCATTCGAGATTCTTATGGTGGTGCACGGGAGCAATTGTTGCAAAACAGCTTAAAGTCTATTGAGAAGGCCAAAGTGATACGGTTGACCCTGCGTCAACTCACATCAGATAGACGGAAGGCATTGACAAAAGTTGTATCAAAACAAGCCGAAGAAGGGAAGGTGGCATTGAGGAACATAAGAAGGGATGCTTTAAAAGCTTATGAAAAACTTCAGAAGGAAAAGAAGCTCTCTGAGGATACTCTCAAGGACTTTTCAAGTGATTTGCAGAAATGGACAGATGAGTATGTTAAGAAACTTGATACCATATCCAAACAGAAAGAGAAGGAATTGCTGAAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002181 GO:0002184 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0022414 GO:0032501 GO:0032502 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0042742 GO:0043021 GO:0043023 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045087 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0071840 GO:0098542 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRF

Protein Analysis

140

Amino Acids

16.05

Weight (kDa)

9.99

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRF	PF01765	44 - 138	4.6e-26	Ribosome recycling factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146101
rosa_laevigata	RLG00000027929 RLG00000036315
rosa_samantha	Rh4BG058700
rosa_wichuraiana	Rw5G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	336
AhdI	GACNNNNNGTC	1 cut(s)	171
AluBI	AGCT	4 cut(s)	55, 129, 278, 307
AluI	AGCT	4 cut(s)	55, 129, 278, 307
Alw21I	GWGCWC	1 cut(s)	106
Alw44I	GTGCAC	1 cut(s)	102
AoxI	GGCC	1 cut(s)	147
ApaLI	GTGCAC	1 cut(s)	102
Asp700I	GAANNNNTTC	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	106
BccI	CCATC	1 cut(s)	47
BciVI	GTATCC	1 cut(s)	310
BfuI	GTATCC	1 cut(s)	310
Bme18I	GGWCC	1 cut(s)	36
BmeRI	GACNNNNNGTC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	36
BmsI	GCATC	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	308
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
BseGI	GGATG	2 cut(s)	39, 271
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	106
BsgI	GTGCAG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	234
BsnI	GGCC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	106
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	304
Bst4CI	ACNGT	2 cut(s)	36, 162
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	2 cut(s)	39, 271
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 118, 275
BstSLI	GKGCMC	1 cut(s)	106
BsuI	GTATCC	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	39, 271
Cfr13I	GGNCC	1 cut(s)	36
CseI	GACGC	1 cut(s)	161
CviJI	RGCY	7 cut(s)	55, 71, 129, 149, 227, 278, 307
CviKI_1	RGCY	7 cut(s)	55, 71, 129, 149, 227, 278, 307
DdeI	CTNAG	1 cut(s)	312
DraI	TTTAAA	1 cut(s)	273
DriI	GACNNNNNGTC	1 cut(s)	171
Eam1105I	GACNNNNNGTC	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	275
FaiI	YATR	5 cut(s)	96, 257, 282, 366, 386
FalI	AAGNNNNNCTT	2 cut(s)	253, 285
FokI	GGATG	2 cut(s)	26, 278
HaeIII	GGCC	1 cut(s)	149
HgaI	GACGC	1 cut(s)	161
HincII	GTYRAC	2 cut(s)	165, 176
HindII	GTYRAC	2 cut(s)	165, 176
HindIII	AAGCTT	1 cut(s)	276
HinfI	GANTC	2 cut(s)	25, 89
Hpy166II	GTNNAC	3 cut(s)	104, 165, 176
Hpy188I	TCNGA	3 cut(s)	187, 294, 313
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	3 cut(s)	104, 165, 176
HpyAV	CCTTC	8 cut(s)	139, 190, 227, 232, 255, 289, 397, 409
HpyCH4III	ACNGT	2 cut(s)	36, 162
HpyCH4V	TGCA	4 cut(s)	32, 104, 121, 346
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 118, 275
HpyF3I	CTNAG	1 cut(s)	312
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	3 cut(s)	33, 42, 182
LweI	GCATC	1 cut(s)	256
MboII	GAAGA	1 cut(s)	242
MfeI	CAATTG	1 cut(s)	113
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	2 cut(s)	113, 407
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	6 cut(s)	53, 72, 83, 86, 243, 307
MroXI	GAANNNNTTC	1 cut(s)	288
MseI	TTAA	3 cut(s)	131, 272, 369
MunI	CAATTG	1 cut(s)	113
MwoI	GCNNNNNNNGC	3 cut(s)	29, 118, 275
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	89
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	36
SaqAI	TTAA	3 cut(s)	131, 272, 369
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	6 cut(s)	57, 131, 243, 280, 309, 420
SfaNI	GCATC	1 cut(s)	256
SinI	GGWCC	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	2 cut(s)	113, 407
TaaI	ACNGT	2 cut(s)	36, 162
TaqI	TCGA	1 cut(s)	85
TasI	AATT	2 cut(s)	113, 407
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	3 cut(s)	131, 272, 369
Tru9I	TTAA	3 cut(s)	131, 272, 369
TspDTI	ATGAA	1 cut(s)	297
TspGWI	ACGGA	1 cut(s)	208
VneI	GTGCAC	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	36
XmnI	GAANNNNTTC	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.