Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0021346

Physical Location & Seq

Genomic Coordinates Reverse (-)

79096644 .. 79100019

Gene Structure 3376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036315

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCGACCCATTTCTCTCCTGTGACTCCTGCACGGTCCATCCTCCAACCGAAGCTAAACCCTCCCCAAGCCTTCCTCTCCATTCGAGATTCTTATGGTGGTGCACGGGTTTGGAAGAAATGCCAGCCCAGTGCTGTTAATATGTGCTCGTGGAGCTCAGCTGCTAGCCTCCTAGTGGCGTTGCTAACAATTGTTGCAAAAGAGGCAAGTTATTATTGCCGCATAATTTGCATTCGAGAACAGCAATTAATCAAAGATGTTTCCAGTGACCTTAATGTTCTGAGCTGTCAGGAGATGGTGTCTTCTATTGCGGGAGTTCTATTGAGAAGGCCAATGGCATGGACTCCAAATAATGATGGACAGGTGATACGGTTGACCCTGCGTCAACTCACATCAGATAGACAGAAGGCATTGACAAAAGTTGTATCAAAACAAGCCGAAGAAGGGAAGGTGGCATTGAGGAACATAAGAAGGGATGCTTTAAAAGCTTATGAAAAACTTCAGAAGGAAAAGAAGCTCTCTGAGGATACTCTCAAGGACTTTTCAAGTGATTTGCAGGTATTTGAAGTTGGAATTCTCCGTCTTGAAGTGGAGATTGATAGTATAGAGGCTGGTAGCTTGGTAGTCTCTAACGAGGTGTTGGCAAAGAGTGGGGTAAATAGTGTCGCTCTTATTCCCCAAAGGGATCTGAAAGTGCTGTTGAAGAACTCTGGTGCACCCAAGCTACCAAAAAGCAGTCGACTGTCCCATATTGAGGCCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002181 GO:0002184 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0022414 GO:0032501 GO:0032502 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0042742 GO:0043021 GO:0043023 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045087 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0071840 GO:0098542 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRF

Protein Analysis

255

Amino Acids

28.1

Weight (kDa)

9.51

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRF	PF01765	97 - 186	2.4e-22	Ribosome recycling factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146101
rosa_laevigata	RLG00000027929 RLG00000036315
rosa_samantha	Rh4BG058700
rosa_wichuraiana	Rw5G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	547
AccI	GTMKAC	1 cut(s)	739
AciI	CCGC	2 cut(s)	220, 311
AclWI	GGATC	1 cut(s)	693
AcsI	RAATTY	1 cut(s)	573
AcuI	CTGAAG	1 cut(s)	485
AfiI	CCNNNNNNNGG	3 cut(s)	175, 444, 754
AgsI	TTSAA	4 cut(s)	546, 566, 587, 703
AhdI	GACNNNNNGTC	1 cut(s)	381
AluBI	AGCT	8 cut(s)	55, 156, 161, 285, 488, 517, 618, 724
AluI	AGCT	8 cut(s)	55, 156, 161, 285, 488, 517, 618, 724
Alw21I	GWGCWC	4 cut(s)	106, 149, 158, 718
Alw26I	GTCTC	1 cut(s)	631
Alw44I	GTGCAC	2 cut(s)	102, 714
AlwI	GGATC	1 cut(s)	693
AoxI	GGCC	2 cut(s)	329, 756
ApaLI	GTGCAC	2 cut(s)	102, 714
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	1 cut(s)	573
AseI	ATTAAT	1 cut(s)	248
Asp700I	GAANNNNTTC	1 cut(s)	498
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	376
AsuNHI	GCTAGC	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	36
BaeGI	GKGCMC	2 cut(s)	106, 718
BanII	GRGCYC	1 cut(s)	158
BauI	CACGAG	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	294
Bbv12I	GWGCWC	4 cut(s)	106, 149, 158, 718
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	3 cut(s)	47, 289, 350
BciVI	GTATCC	1 cut(s)	520
BcoDI	GTCTC	1 cut(s)	631
BfaI	CTAG	2 cut(s)	165, 173
BfuAI	ACCTGC	1 cut(s)	547
BfuI	GTATCC	1 cut(s)	520
BisI	GCNGC	2 cut(s)	162, 220
BlpI	GCTNAGC	1 cut(s)	157
BlsI	GCNGC	2 cut(s)	163, 221
Bme18I	GGWCC	1 cut(s)	36
BmeRI	GACNNNNNGTC	1 cut(s)	381
BmgT120I	GGNCC	1 cut(s)	36
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	466
BmtI	GCTAGC	1 cut(s)	168
BmuI	ACTGGG	1 cut(s)	123
BpiI	GAAGAC	1 cut(s)	294
Bpu1102I	GCTNAGC	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	518
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 444, 754
Bse1I	ACTGG	2 cut(s)	129, 264
BseGI	GGATG	2 cut(s)	39, 481
BseLI	CCNNNNNNNGG	3 cut(s)	175, 444, 754
BseMII	CTCAG	3 cut(s)	171, 272, 513
BseNI	ACTGG	2 cut(s)	129, 264
BseSI	GKGCMC	2 cut(s)	106, 718
BseXI	GCAGC	1 cut(s)	148
BsgI	GTGCAG	1 cut(s)	15
BshFI	GGCC	2 cut(s)	331, 758
BsiHKAI	GWGCWC	4 cut(s)	106, 149, 158, 718
BslFI	GGGAC	1 cut(s)	730
BslI	CCNNNNNNNGG	3 cut(s)	175, 444, 754
BsmAI	GTCTC	1 cut(s)	631
BsmFI	GGGAC	1 cut(s)	730
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	331, 758
Bsp1286I	GDGCHC	4 cut(s)	106, 149, 158, 718
Bsp143I	GATC	1 cut(s)	685
Bsp1720I	GCTNAGC	1 cut(s)	157
BspACI	CCGC	2 cut(s)	220, 311
BspANI	GGCC	2 cut(s)	331, 758
BspCNI	CTCAG	3 cut(s)	170, 273, 514
BspMI	ACCTGC	1 cut(s)	547
BspOI	GCTAGC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	693
BsrI	ACTGG	2 cut(s)	129, 264
BssMI	GATC	1 cut(s)	685
BssSI	CACGAG	1 cut(s)	148
Bst2BI	CACGAG	1 cut(s)	148
Bst4CI	ACNGT	3 cut(s)	36, 372, 744
BstAPI	GCANNNNNTGC	1 cut(s)	228
BstC8I	GCNNGC	2 cut(s)	125, 166
BstDEI	CTNAG	3 cut(s)	157, 281, 522
BstF5I	GGATG	2 cut(s)	39, 481
BstKTI	GATC	1 cut(s)	688
BstMAI	GTCTC	1 cut(s)	631
BstMBI	GATC	1 cut(s)	685
BstMWI	GCNNNNNNNGC	4 cut(s)	153, 203, 228, 485
BstSLI	GKGCMC	2 cut(s)	106, 718
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	1 cut(s)	294
BstX2I	RGATCY	1 cut(s)	685
BstXI	CCANNNNNNTGG	1 cut(s)	339
BstYI	RGATCY	1 cut(s)	685
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	331, 758
BtsCI	GGATG	2 cut(s)	39, 481
BtsIMutI	CAGTG	2 cut(s)	136, 271
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	2 cut(s)	125, 166
Cfr13I	GGNCC	1 cut(s)	36
CseI	GACGC	1 cut(s)	371
CviAII	CATG	1 cut(s)	339
DdeI	CTNAG	3 cut(s)	157, 281, 522
DpnI	GATC	1 cut(s)	687
DpnII	GATC	1 cut(s)	685
DraI	TTTAAA	1 cut(s)	483
DriI	GACNNNNNGTC	1 cut(s)	381
Eam1105I	GACNNNNNGTC	1 cut(s)	381
Ecl136II	GAGCTC	1 cut(s)	156
Eco147I	AGGCCT	1 cut(s)	758
Eco24I	GRGCYC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	485
EcoICRI	GAGCTC	1 cut(s)	156
EcoRI	GAATTC	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	158
FaeI	CATG	1 cut(s)	342
FaiI	YATR	8 cut(s)	96, 143, 224, 340, 467, 492, 605, 750
FalI	AAGNNNNNCTT	2 cut(s)	463, 495
FaqI	GGGAC	1 cut(s)	730
FatI	CATG	1 cut(s)	338
FauI	CCCGC	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	739
Fnu4HI	GCNGC	2 cut(s)	162, 220
FokI	GGATG	2 cut(s)	26, 488
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	2 cut(s)	162, 220
FspBI	CTAG	2 cut(s)	165, 173
GluI	GCNGC	2 cut(s)	162, 220
HaeIII	GGCC	2 cut(s)	331, 758
HgaI	GACGC	1 cut(s)	371
Hin1II	CATG	1 cut(s)	342
HincII	GTYRAC	3 cut(s)	375, 386, 740
HindII	GTYRAC	3 cut(s)	375, 386, 740
HindIII	AAGCTT	1 cut(s)	486
HinfI	GANTC	3 cut(s)	25, 89, 343
HphI	GGTGA	1 cut(s)	376
Hpy166II	GTNNAC	5 cut(s)	104, 375, 386, 716, 740
Hpy188I	TCNGA	5 cut(s)	282, 397, 504, 523, 690
Hpy188III	TCNNGA	4 cut(s)	86, 236, 290, 584
Hpy8I	GTNNAC	5 cut(s)	104, 375, 386, 716, 740
HpyAV	CCTTC	7 cut(s)	82, 321, 400, 437, 442, 465, 499
HpyCH4III	ACNGT	3 cut(s)	36, 372, 744
HpyCH4V	TGCA	6 cut(s)	32, 104, 197, 231, 556, 716
HpyF10VI	GCNNNNNNNGC	4 cut(s)	153, 203, 228, 485
HpyF3I	CTNAG	3 cut(s)	157, 281, 522
Hsp92II	CATG	1 cut(s)	342
Kzo9I	GATC	1 cut(s)	685
LmnI	GCTCC	1 cut(s)	153
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	2 cut(s)	165, 173
MaeIII	GTNAC	2 cut(s)	22, 266
MalI	GATC	1 cut(s)	687
MboI	GATC	1 cut(s)	685
MboII	GAAGA	4 cut(s)	127, 294, 452, 715
MfeI	CAATTG	1 cut(s)	189
MflI	RGATCY	1 cut(s)	685
MhlI	GDGCHC	4 cut(s)	106, 149, 158, 718
MluCI	AATT	4 cut(s)	189, 225, 245, 573
MlyI	GAGTC	2 cut(s)	19, 337
MmeI	TCCRAC	2 cut(s)	70, 550
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	4 cut(s)	138, 248, 273, 482
MspA1I	CMGCKG	1 cut(s)	161
MunI	CAATTG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	231
MwoI	GCNNNNNNNGC	4 cut(s)	153, 203, 228, 485
NdeII	GATC	1 cut(s)	685
NheI	GCTAGC	1 cut(s)	164
NlaIII	CATG	1 cut(s)	342
NmuCI	GTSAC	2 cut(s)	22, 266
PceI	AGGCCT	1 cut(s)	758
PctI	GAATGC	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	163, 221
PleI	GAGTC	2 cut(s)	19, 337
PpsI	GAGTC	2 cut(s)	19, 337
PshBI	ATTAAT	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	685
PvuII	CAGCTG	1 cut(s)	161
SacI	GAGCTC	1 cut(s)	158
SalI	GTCGAC	1 cut(s)	738
SaqAI	TTAA	4 cut(s)	138, 248, 273, 482
SatI	GCNGC	2 cut(s)	162, 220
Sau3AI	GATC	1 cut(s)	685
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	2 cut(s)	19, 337
SduI	GDGCHC	4 cut(s)	106, 149, 158, 718
SfaNI	GCATC	1 cut(s)	466
SinI	GGWCC	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	4 cut(s)	189, 225, 245, 573
SseBI	AGGCCT	1 cut(s)	758
SsiI	CCGC	2 cut(s)	220, 311
SspMI	CTAG	2 cut(s)	165, 173
SstI	GAGCTC	1 cut(s)	158
StuI	AGGCCT	1 cut(s)	758
TaaI	ACNGT	3 cut(s)	36, 372, 744
TaqI	TCGA	3 cut(s)	85, 235, 739
TasI	AATT	4 cut(s)	189, 225, 245, 573
TauI	GCSGC	1 cut(s)	222
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	4 cut(s)	138, 248, 273, 482
Tru9I	TTAA	4 cut(s)	138, 248, 273, 482
TscAI	CASTG	2 cut(s)	136, 271
TseFI	GTSAC	2 cut(s)	22, 266
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	2 cut(s)	22, 266
TspDTI	ATGAA	1 cut(s)	507
TspGWI	ACGGA	1 cut(s)	569
TspRI	CASTG	2 cut(s)	136, 271
VneI	GTGCAC	2 cut(s)	102, 714
VpaK11BI	GGWCC	1 cut(s)	36
VspI	ATTAAT	1 cut(s)	248
XapI	RAATTY	1 cut(s)	573
XmiI	GTMKAC	1 cut(s)	739
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	2 cut(s)	165, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.