Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0021346

Physical Location & Seq

Genomic Coordinates Forward (+)

38398541 .. 38400859

Gene Structure 2319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G026510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCGACCCATTTCTCTCCTGCGACTCCTGCACGGTCCATCCTCCAACCGAAGCTAAACCCTCCCCAAGCCCTCCTCTCCATTCGAGATTCTTATGGTGGTGCACGGGTTTGGAAGAAATGCCAGCCCAGTGCTGTTAATATGTGCTCGTGGAGCTCAGCTGCTAGCCTCCTGGTGGCGTTGCTAACAATTGTTGCAAAAGAGGCAAAACAGCAATTAATCAAAGATGTTTCCAATGGTGTCTTCTATTGCGGGAGTGTACTTGGCACTAACTGGATTTTTTATCTATTGAGAAGGCCAAAGTTGCGTCTGATCTTGGCATGGACTCCAAATAATGATGGACAGGTGATACGGTTGACCCTGCGTCAACTCACATCAGATAGACGGAAGGCATTGACAAAAGTTGTATCAAAACAAGCCGAAGAAGGGAAGGTGGCATTGAGGAACATAAGAAGGGATGCTTTAAAAGCTTATGAAAAACTTCAGAAGGAAAAGAAGCTCTCTGAGGATACTCTCAAGGACTTTTCAAGTGATTTGCAGAAATGGACAGATGAGTATGTGAAGAAACTTGATACCATATCCAAACAGAAAGAGAAGGAATTGCTGAAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002181 GO:0002184 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0022414 GO:0032501 GO:0032502 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0042742 GO:0043021 GO:0043023 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045087 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0071840 GO:0098542 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRF

Protein Analysis

204

Amino Acids

23.14

Weight (kDa)

9.98

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRF	PF01765	106 - 202	3.1e-30	Ribosome recycling factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146101
rosa_laevigata	RLG00000027929 RLG00000036315
rosa_samantha	Rh4BG058700
rosa_wichuraiana	Rw5G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	467
AfaI	GTAC	1 cut(s)	261
AfiI	CCNNNNNNNGG	2 cut(s)	175, 426
AgsI	TTSAA	1 cut(s)	528
AhdI	GACNNNNNGTC	1 cut(s)	363
AjnI	CCWGG	1 cut(s)	171
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	5 cut(s)	55, 156, 161, 470, 499
AluI	AGCT	5 cut(s)	55, 156, 161, 470, 499
Alw21I	GWGCWC	3 cut(s)	106, 149, 158
Alw44I	GTGCAC	1 cut(s)	102
AoxI	GGCC	1 cut(s)	296
ApaLI	GTGCAC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	161
AseI	ATTAAT	1 cut(s)	218
Asp700I	GAANNNNTTC	1 cut(s)	480
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	358
AsuNHI	GCTAGC	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	158
BauI	CACGAG	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	235
Bbv12I	GWGCWC	3 cut(s)	106, 149, 158
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	2 cut(s)	47, 332
BciT130I	CCWGG	1 cut(s)	173
BciVI	GTATCC	1 cut(s)	502
BfaI	CTAG	1 cut(s)	165
BfuI	GTATCC	1 cut(s)	502
BisI	GCNGC	1 cut(s)	162
BlpI	GCTNAGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	36
BmeRI	GACNNNNNGTC	1 cut(s)	363
BmgT120I	GGNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	173
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	448
BmtI	GCTAGC	1 cut(s)	168
BmuI	ACTGGG	1 cut(s)	123
BpiI	GAAGAC	1 cut(s)	235
Bpu1102I	GCTNAGC	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	500
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 426
Bse1I	ACTGG	2 cut(s)	129, 278
BseBI	CCWGG	1 cut(s)	173
BseGI	GGATG	2 cut(s)	39, 463
BseLI	CCNNNNNNNGG	2 cut(s)	175, 426
BseMII	CTCAG	2 cut(s)	171, 495
BseNI	ACTGG	2 cut(s)	129, 278
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	148
BsgI	GTGCAG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	298
BsiHKAI	GWGCWC	3 cut(s)	106, 149, 158
BslI	CCNNNNNNNGG	2 cut(s)	175, 426
BsnI	GGCC	1 cut(s)	298
Bsp1286I	GDGCHC	3 cut(s)	106, 149, 158
Bsp143I	GATC	1 cut(s)	312
Bsp1720I	GCTNAGC	1 cut(s)	157
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	1 cut(s)	298
BspCNI	CTCAG	2 cut(s)	170, 496
BspOI	GCTAGC	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	129, 278
BssMI	GATC	1 cut(s)	312
BssSI	CACGAG	1 cut(s)	148
Bst2BI	CACGAG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	2 cut(s)	36, 354
BstC8I	GCNNGC	2 cut(s)	125, 166
BstDEI	CTNAG	2 cut(s)	157, 504
BstF5I	GGATG	2 cut(s)	39, 463
BstKTI	GATC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	312
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 153, 203, 304, 467
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstSLI	GKGCMC	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	1 cut(s)	235
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	39, 463
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	2 cut(s)	125, 166
Cfr13I	GGNCC	1 cut(s)	36
CseI	GACGC	2 cut(s)	296, 353
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	1 cut(s)	321
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	2 cut(s)	157, 504
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
DraI	TTTAAA	1 cut(s)	465
DriI	GACNNNNNGTC	1 cut(s)	363
Eam1105I	GACNNNNNGTC	1 cut(s)	363
Ecl136II	GAGCTC	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	467
EcoICRI	GAGCTC	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	158
FaeI	CATG	1 cut(s)	324
FaiI	YATR	7 cut(s)	96, 143, 322, 449, 474, 558, 578
FalI	AAGNNNNNCTT	2 cut(s)	445, 477
FatI	CATG	1 cut(s)	320
FauI	CCCGC	1 cut(s)	245
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	2 cut(s)	26, 470
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	298
HgaI	GACGC	2 cut(s)	296, 353
Hin1II	CATG	1 cut(s)	324
HincII	GTYRAC	2 cut(s)	357, 368
HindII	GTYRAC	2 cut(s)	357, 368
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	3 cut(s)	25, 89, 325
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	4 cut(s)	104, 260, 357, 368
Hpy188I	TCNGA	4 cut(s)	312, 379, 486, 505
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	4 cut(s)	104, 260, 357, 368
HpyAV	CCTTC	8 cut(s)	288, 382, 419, 424, 447, 481, 589, 601
HpyCH4III	ACNGT	2 cut(s)	36, 354
HpyCH4V	TGCA	4 cut(s)	32, 104, 197, 538
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 153, 203, 304, 467
HpyF3I	CTNAG	2 cut(s)	157, 504
Hsp92II	CATG	1 cut(s)	324
Kzo9I	GATC	1 cut(s)	312
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	9 cut(s)	33, 42, 137, 142, 158, 185, 259, 329, 374
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	448
MaeI	CTAG	1 cut(s)	165
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	4 cut(s)	127, 235, 434, 574
MfeI	CAATTG	1 cut(s)	189
MhlI	GDGCHC	3 cut(s)	106, 149, 158
MluCI	AATT	3 cut(s)	189, 215, 599
MlyI	GAGTC	2 cut(s)	19, 319
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	8 cut(s)	53, 72, 83, 86, 179, 196, 435, 499
MroXI	GAANNNNTTC	1 cut(s)	480
MseI	TTAA	3 cut(s)	138, 218, 464
MspA1I	CMGCKG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	173
MunI	CAATTG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	5 cut(s)	29, 153, 203, 304, 467
NdeII	GATC	1 cut(s)	312
NheI	GCTAGC	1 cut(s)	164
NlaIII	CATG	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	2 cut(s)	19, 319
PpsI	GAGTC	2 cut(s)	19, 319
PshBI	ATTAAT	1 cut(s)	218
Psp124BI	GAGCTC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	158
SaqAI	TTAA	3 cut(s)	138, 218, 464
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	2 cut(s)	19, 319
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	3 cut(s)	106, 149, 158
SetI	ASST	8 cut(s)	57, 158, 163, 348, 435, 472, 501, 612
SfaNI	GCATC	1 cut(s)	448
SinI	GGWCC	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	3 cut(s)	189, 215, 599
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	1 cut(s)	165
SstI	GAGCTC	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	171
TaaI	ACNGT	2 cut(s)	36, 354
TaqI	TCGA	1 cut(s)	85
TasI	AATT	3 cut(s)	189, 215, 599
TatI	WGTACW	1 cut(s)	259
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	3 cut(s)	138, 218, 464
Tru9I	TTAA	3 cut(s)	138, 218, 464
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	489
TspGWI	ACGGA	1 cut(s)	400
TspRI	CASTG	1 cut(s)	136
VneI	GTGCAC	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	36
VspI	ATTAAT	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	480
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.