Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0021346

Physical Location & Seq

Genomic Coordinates Reverse (-)

16942161 .. 16944491

Gene Structure 2331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027929

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCGACCCATTTCTCTCCTGCGACTCCTGCACGGTCCATCCTCCAACCGAAGCTAAACCCTCCCCAAGCCCTCCTCTCCATCCGAGATTCTTATGGCGGTGCACGGGTTTGGAAGAAATGCCAGCCCAGTGCTGTTAATATGTGCTCGTGGAGCTCAGCTGCTAGCCTCCTGGTGGCGTTGCTAACAATTGTTGCAAAAGAGGCAAAGTTGCCACAACATATTTCACCGATAAGGATGGGTTTAAAATTTTCTCACTACTGCTGTAATCTATTGAGAAGGCCAAAGTTCCGTCTGATCTTGGCATGGACTCCAAATAATGATGGACAGGTGATATGGTTGACCCTGCGTCAACTCACATCAGATATACGGAAGGCATTGACAAAAGTTGTATTAAAACAAGCCGAAGAAGGGAAGGTGGCATTGAGGAACATAAGAAGGGATGCTTTAAAAGCTTATGAAAAACTTCAGAAGGAAAAGAAGCTCTCTGAGGATACTCTCAAGGACTTTTCAAGTGATTTGCAGTATGTGAAGAAACTTGATACCATATCCAAACAGAAAGAGAAGGAATTGCTGAAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002181 GO:0002184 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0022414 GO:0032501 GO:0032502 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0042742 GO:0043021 GO:0043023 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045087 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0071840 GO:0098542 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRF

Protein Analysis

195

Amino Acids

22.02

Weight (kDa)

10.05

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRF	PF01765	101 - 192	8.6e-22	Ribosome recycling factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146101
rosa_laevigata	RLG00000027929 RLG00000036315
rosa_samantha	Rh4BG058700
rosa_wichuraiana	Rw5G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	248
AcuI	CTGAAG	1 cut(s)	452
AfiI	CCNNNNNNNGG	2 cut(s)	175, 411
AgsI	TTSAA	1 cut(s)	513
AhdI	GACNNNNNGTC	1 cut(s)	348
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	5 cut(s)	55, 156, 161, 455, 484
AluI	AGCT	5 cut(s)	55, 156, 161, 455, 484
Alw21I	GWGCWC	3 cut(s)	106, 149, 158
Alw44I	GTGCAC	1 cut(s)	102
AoxI	GGCC	1 cut(s)	281
ApaLI	GTGCAC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	1 cut(s)	248
Asp700I	GAANNNNTTC	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	2 cut(s)	219, 343
AsuNHI	GCTAGC	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	158
BauI	CACGAG	1 cut(s)	148
Bbv12I	GWGCWC	3 cut(s)	106, 149, 158
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	4 cut(s)	47, 89, 232, 317
BciT130I	CCWGG	1 cut(s)	173
BciVI	GTATCC	1 cut(s)	487
BfaI	CTAG	1 cut(s)	165
BfuI	GTATCC	1 cut(s)	487
BisI	GCNGC	1 cut(s)	162
BlpI	GCTNAGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	36
BmeRI	GACNNNNNGTC	1 cut(s)	348
BmgT120I	GGNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	173
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	433
BmtI	GCTAGC	1 cut(s)	168
BmuI	ACTGGG	1 cut(s)	123
Bpu1102I	GCTNAGC	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	485
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 411
Bse1I	ACTGG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	173
BseGI	GGATG	4 cut(s)	39, 81, 243, 448
BseLI	CCNNNNNNNGG	2 cut(s)	175, 411
BseMII	CTCAG	2 cut(s)	171, 480
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	148
BsgI	GTGCAG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	283
BsiHKAI	GWGCWC	3 cut(s)	106, 149, 158
BslI	CCNNNNNNNGG	2 cut(s)	175, 411
BsnI	GGCC	1 cut(s)	283
Bsp1286I	GDGCHC	3 cut(s)	106, 149, 158
Bsp143I	GATC	1 cut(s)	297
Bsp1720I	GCTNAGC	1 cut(s)	157
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	2 cut(s)	170, 481
BspOI	GCTAGC	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	129
BssMI	GATC	1 cut(s)	297
BssSI	CACGAG	1 cut(s)	148
Bst2BI	CACGAG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	125, 166
BstDEI	CTNAG	2 cut(s)	157, 489
BstF5I	GGATG	4 cut(s)	39, 81, 243, 448
BstKTI	GATC	1 cut(s)	300
BstMBI	GATC	1 cut(s)	297
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 153, 203, 452
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstSLI	GKGCMC	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	148
BsuI	GTATCC	1 cut(s)	487
BsuRI	GGCC	1 cut(s)	283
BtsCI	GGATG	4 cut(s)	39, 81, 243, 448
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	2 cut(s)	125, 166
Cfr13I	GGNCC	1 cut(s)	36
CseI	GACGC	1 cut(s)	338
CviAII	CATG	1 cut(s)	306
DdeI	CTNAG	2 cut(s)	157, 489
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
DraI	TTTAAA	2 cut(s)	246, 450
DriI	GACNNNNNGTC	1 cut(s)	348
Eam1105I	GACNNNNNGTC	1 cut(s)	348
Ecl136II	GAGCTC	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	452
EcoICRI	GAGCTC	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	158
FaeI	CATG	1 cut(s)	309
FalI	AAGNNNNNCTT	2 cut(s)	430, 462
FatI	CATG	1 cut(s)	305
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	4 cut(s)	26, 68, 250, 455
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	283
HgaI	GACGC	1 cut(s)	338
Hin1II	CATG	1 cut(s)	309
HincII	GTYRAC	2 cut(s)	342, 353
HindII	GTYRAC	2 cut(s)	342, 353
HindIII	AAGCTT	1 cut(s)	453
HinfI	GANTC	3 cut(s)	25, 89, 310
HphI	GGTGA	2 cut(s)	219, 343
Hpy166II	GTNNAC	3 cut(s)	104, 342, 353
Hpy188I	TCNGA	5 cut(s)	86, 297, 364, 471, 490
Hpy8I	GTNNAC	3 cut(s)	104, 342, 353
HpyAV	CCTTC	8 cut(s)	273, 367, 404, 409, 432, 466, 559, 571
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	4 cut(s)	32, 104, 197, 523
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 153, 203, 452
HpyF3I	CTNAG	2 cut(s)	157, 489
Hsp92II	CATG	1 cut(s)	309
Kzo9I	GATC	1 cut(s)	297
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	8 cut(s)	33, 42, 137, 142, 158, 185, 314, 359
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	1 cut(s)	165
MalI	GATC	1 cut(s)	299
MboI	GATC	1 cut(s)	297
MboII	GAAGA	3 cut(s)	127, 419, 544
MfeI	CAATTG	1 cut(s)	189
MhlI	GDGCHC	3 cut(s)	106, 149, 158
MluCI	AATT	3 cut(s)	189, 248, 569
MlyI	GAGTC	2 cut(s)	19, 304
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	8 cut(s)	53, 72, 83, 86, 179, 196, 420, 484
MroXI	GAANNNNTTC	1 cut(s)	465
MseI	TTAA	4 cut(s)	138, 245, 395, 449
MspA1I	CMGCKG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	173
MunI	CAATTG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	4 cut(s)	29, 153, 203, 452
NdeII	GATC	1 cut(s)	297
NheI	GCTAGC	1 cut(s)	164
NlaIII	CATG	1 cut(s)	309
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	2 cut(s)	19, 304
PpsI	GAGTC	2 cut(s)	19, 304
Psp124BI	GAGCTC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	161
SacI	GAGCTC	1 cut(s)	158
SaqAI	TTAA	4 cut(s)	138, 245, 395, 449
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	1 cut(s)	297
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	2 cut(s)	19, 304
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	3 cut(s)	106, 149, 158
SetI	ASST	8 cut(s)	57, 158, 163, 333, 420, 457, 486, 582
SfaNI	GCATC	1 cut(s)	433
SinI	GGWCC	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	3 cut(s)	189, 248, 569
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	1 cut(s)	165
SstI	GAGCTC	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	36
TasI	AATT	3 cut(s)	189, 248, 569
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	4 cut(s)	138, 245, 395, 449
Tru9I	TTAA	4 cut(s)	138, 245, 395, 449
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	474
TspGWI	ACGGA	2 cut(s)	281, 385
TspRI	CASTG	1 cut(s)	136
VneI	GTGCAC	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	36
XapI	RAATTY	1 cut(s)	248
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.