Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009908

Physical Location & Seq

Genomic Coordinates Reverse (-)

6918373 .. 6921285

Gene Structure 2913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1602 bp

ATGAGGCATCCACCAGTTCACCTTCTGAAACAAATGAACATTTTTATCATAAAAAGCTTCATGATCTTGTTCCTGAGCTCTGTAACTGTTAGAGTGAACCTTTGTTCTCCAAATACGCCTTCATTAAACACACTTCCACTTGAAGGTCATTTCAACTTTCACGAAGTTCAGCATGCAGCCCGAGATTTTGGCAACAGGTACCAGTTCCTCCCTATGGCAATACTACATCCAAAAACGGTTTCGGACATAGCCACTTTAGTCAAGCATATTTGGGATATAGGTCCTCGTTCAGAGCTCACAGCTGCTGCTAGAGGCCATGGCCACTCACTCCAGGGTCAGTCACAAGCCCACAGAGGAGTTGTCATCAATATGGAATCACTTAAGGGGCCCGAAATCCAGGTTTACGCTGGAAATTTTCCATATGCAGATGTCTCTGGTGGTGAGTTGTGGATAAATATCCTGCATGAAAGCTTGAAATATGGGTTAGCACCAAAATCATGGACAGACTACCTACATCTAACTGTTGGTGGTACTCTGTCTAATGCTGGGATCAGCGGGCAGGCATTCCGACATGGCCCCAGATCAGCAATGTCCGCCAGCTGGAAGTTGTTACAGATTGTAACTTGTTCAGAGAAGCAGAACGACGACCTATTTCATGGTGTTCTTGGAGGACTTGGTCAGTTTGGCATCATAACCCGGGCAAGAATATTGTTGGAAGCAGCACCTGCAAGGGTAAAATGGATTAGAGTGCTGTATTCAGATTTCGCAGCATTTACCCGAGATCAGGAGCATCTAATATCTGGCGAACATACATTTAATTACGTCGAAGGATTTGTCATAATAAACAGGAGTGGTCTGCTGAACAGTTGGAGATCATCTTTCAATCCAAAAGACCCAGTTCAGGCCAGCCAGTTCAAGTCAGATGGAAGAACTCTATTCTGCCTAGAAATGGCCAAATACTTCAACCAGGACAAGATCGATATAATAAATCAGGAAGTTGACAAGTCATTGTCTGAATTGAGCTACATCCCTTCCACGCTATTTGAGTCAGAAGTTACATACACAGATTTCTTGGACAGGGTACATATATCTGAGATGAAACTACGCTCAAAAGATCTGTGGGATGTTCCACACCCATGGCTCAATCTTCTAATACCAAAAAGCAAAATTCATACTTTTGCTCGAGGAGTGTTTGGCAACATCCAAACAGAAACAAGCAACGGCCCCATCCTCATCTATCCAGTTAACAGATCAAAGTGGGACAACAGAACTTCCGTAGTTATACCGGAGGAACATATTTTTTACTTGGTGGCATTCCTTACCTCTGCAGTTCCCTCTTCAACTGGAACTGATGGTTTAGAACACATCTTAATTCAGAACAAAAGAATTCTAGAATTCTGTGAAACAGCCAATCTTGGGGTCAAGCAATATCTACCGCATTACACCAAACAAGAAGACTGGCAGGCCCACTTTGGCCCCCACTGGGAAAAATTTGTGCAAAGAAAATCTACTTATGACCCATTGGCAATACTTGCTCCAGGACAAAGAATATTTCAAAAGGCAATACCCTTCTCATCACAGTCGCCATCTAGTATAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009308 GO:0009653 GO:0009690 GO:0009791 GO:0009823 GO:0009888 GO:0009987 GO:0010016 GO:0010103 GO:0010374 GO:0010817 GO:0016491 GO:0016645 GO:0019139 GO:0032501 GO:0032502 GO:0034754 GO:0042445 GO:0042447 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048367 GO:0048507 GO:0048731 GO:0048856 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0090558 GO:0090626 GO:0090698 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 map00908

Pfam Domains

Protein Families

Cytokin-bind FAD_binding_4

Protein Analysis

533

Amino Acids

60.26

Weight (kDa)

8.66

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	72 - 203	1.9e-09	FAD binding domain
Cytokin-bind	PF09265	242 - 518	8e-121	Cytokinin dehydrogenase 1, FAD and cytokinin binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63440
fragaria_vesca	FvH4_3g03260 FvH4_7g02150 FvH4_7g02150
malus_domestica	MD07G1026600.v1.1
prunus_persica	Prupe.2G026700_v2.0.a1 Prupe.2G026700_v2.0.a1
pyrus_communis	pycom02g25060 pycom07g02010
rosa_chinensis	RchiOBHm_Chr1g0319331
rosa_laevigata	RLG00000030494
rosa_multiflora	Rmu_sc0003338.1_g000006 Rmu_sc0014506.1_g000010
rosa_roxburghii	Rroxscaffold_4G00328570
rosa_rugosa	Rorug01G0026800 Rorug01G0026900
rosa_samantha	Rh1AG039000 Rh1BG035800 Rh1CG038000 Rh1DG031900
rosa_wichuraiana	Rw1G003120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	733
Acc36I	ACCTGC	1 cut(s)	733
Acc65I	GGTACC	1 cut(s)	198
AccB1I	GGYRCC	1 cut(s)	198
AciI	CCGC	3 cut(s)	555, 594, 1436
AclWI	GGATC	1 cut(s)	557
AcoI	YGGCCR	2 cut(s)	319, 951
AcsI	RAATTY	5 cut(s)	412, 1167, 1386, 1394, 1490
AfaI	GTAC	3 cut(s)	200, 532, 1083
AfiI	CCNNNNNNNGG	8 cut(s)	143, 214, 600, 784, 901, 949, 1416, 1483
AflII	CTTAAG	1 cut(s)	380
AgsI	TTSAA	8 cut(s)	143, 154, 475, 883, 916, 964, 1341, 1556
AjnI	CCWGG	4 cut(s)	330, 396, 966, 1537
AjuI	GAANNNNNNNTTGG	4 cut(s)	103, 135, 223, 255
AluBI	AGCT	7 cut(s)	57, 78, 295, 302, 471, 600, 1023
AluI	AGCT	7 cut(s)	57, 78, 295, 302, 471, 600, 1023
Alw21I	GWGCWC	2 cut(s)	80, 297
Alw26I	GTCTC	1 cut(s)	436
AlwI	GGATC	1 cut(s)	557
AlwNI	CAGNNNCTG	2 cut(s)	305, 725
Ama87I	CYCGRG	4 cut(s)	180, 696, 777, 1182
AoxI	GGCC	9 cut(s)	313, 319, 386, 574, 903, 951, 1222, 1464, 1474
ApaI	GGGCCC	1 cut(s)	390
ApeKI	GCWGC	5 cut(s)	176, 302, 305, 719, 767
ApoI	RAATTY	5 cut(s)	412, 1167, 1386, 1394, 1490
ArsI	GACNNNNNNTTYG	2 cut(s)	819, 851
Asp718I	GGTACC	1 cut(s)	198
AspS9I	GGNCC	7 cut(s)	281, 386, 387, 575, 1223, 1465, 1475
AsuC2I	CCSGG	2 cut(s)	697, 698
AsuHPI	GGTGA	2 cut(s)	11, 452
AvaI	CYCGRG	4 cut(s)	180, 696, 777, 1182
AvaII	GGWCC	1 cut(s)	281
BaeGI	GKGCMC	1 cut(s)	390
BalI	TGGCCA	2 cut(s)	321, 953
BanI	GGYRCC	1 cut(s)	198
BanII	GRGCYC	3 cut(s)	80, 297, 390
BbsI	GAAGAC	1 cut(s)	1461
Bbv12I	GWGCWC	2 cut(s)	80, 297
BbvI	GCAGC	5 cut(s)	188, 289, 292, 731, 779
BccI	CCATC	4 cut(s)	917, 1235, 1346, 1594
BceAI	ACGGC	1 cut(s)	1237
BciT130I	CCWGG	4 cut(s)	332, 398, 968, 1539
BcnI	CCSGG	2 cut(s)	697, 698
BcoDI	GTCTC	1 cut(s)	436
BfaI	CTAG	4 cut(s)	309, 944, 1391, 1590
BfmI	CTRYAG	1 cut(s)	1326
BfrI	CTTAAG	1 cut(s)	380
BfuAI	ACCTGC	1 cut(s)	733
BglII	AGATCT	1 cut(s)	1114
BisI	GCNGC	5 cut(s)	177, 303, 306, 720, 768
BlsI	GCNGC	5 cut(s)	178, 304, 307, 721, 769
Bme1390I	CCNGG	6 cut(s)	332, 398, 697, 698, 968, 1539
Bme18I	GGWCC	1 cut(s)	281
BmeT110I	CYCGRG	4 cut(s)	180, 696, 777, 1182
BmgT120I	GGNCC	7 cut(s)	281, 386, 387, 575, 1223, 1465, 1475
BmiI	GGNNCC	6 cut(s)	200, 387, 388, 577, 1225, 1477
BmrFI	CCNGG	6 cut(s)	332, 398, 697, 698, 968, 1539
BmrI	ACTGGG	2 cut(s)	890, 1492
BmsI	GCATC	3 cut(s)	16, 696, 799
BmuI	ACTGGG	2 cut(s)	890, 1492
BpiI	GAAGAC	1 cut(s)	1461
BpmI	CTGGAG	2 cut(s)	314, 1521
Bpu10I	CCTNAGC	1 cut(s)	74
BpuMI	CCSGG	2 cut(s)	697, 698
Bsa29I	ATCGAT	1 cut(s)	978
BsaBI	GATNNNNATC	1 cut(s)	455
BsaJI	CCNNGG	4 cut(s)	316, 331, 696, 1136
BsaWI	WCCGGW	1 cut(s)	1285
Bsc4I	CCNNNNNNNGG	8 cut(s)	143, 214, 600, 784, 901, 949, 1416, 1483
Bse1I	ACTGG	8 cut(s)	14, 202, 896, 910, 1241, 1348, 1463, 1487
Bse3DI	GCAATG	1 cut(s)	594
Bse8I	GATNNNNATC	1 cut(s)	455
BseBI	CCWGG	4 cut(s)	332, 398, 968, 1539
BseCI	ATCGAT	1 cut(s)	978
BseDI	CCNNGG	4 cut(s)	316, 331, 696, 1136
BseGI	GGATG	6 cut(s)	7, 226, 1026, 1129, 1200, 1227
BseJI	GATNNNNATC	1 cut(s)	455
BseLI	CCNNNNNNNGG	8 cut(s)	143, 214, 600, 784, 901, 949, 1416, 1483
BseMI	GCAATG	1 cut(s)	594
BseMII	CTCAG	2 cut(s)	65, 1083
BseNI	ACTGG	8 cut(s)	14, 202, 896, 910, 1241, 1348, 1463, 1487
BseRI	GAGGAG	2 cut(s)	369, 1200
BseSI	GKGCMC	1 cut(s)	390
BseXI	GCAGC	5 cut(s)	188, 289, 292, 731, 779
BseYI	CCCAGC	1 cut(s)	545
BshFI	GGCC	9 cut(s)	315, 321, 388, 576, 905, 953, 1224, 1466, 1476
BshNI	GGYRCC	1 cut(s)	198
BshVI	ATCGAT	1 cut(s)	978
BsiHKAI	GWGCWC	2 cut(s)	80, 297
BsiHKCI	CYCGRG	4 cut(s)	180, 696, 777, 1182
BsiSI	CCGG	2 cut(s)	697, 1286
BslFI	GGGAC	1 cut(s)	1274
BslI	CCNNNNNNNGG	8 cut(s)	143, 214, 600, 784, 901, 949, 1416, 1483
BsmAI	GTCTC	1 cut(s)	436
BsmFI	GGGAC	1 cut(s)	1274
BsmI	GAATGC	2 cut(s)	563, 1313
BsnI	GGCC	9 cut(s)	315, 321, 388, 576, 905, 953, 1224, 1466, 1476
BsoBI	CYCGRG	4 cut(s)	180, 696, 777, 1182
Bsp120I	GGGCCC	1 cut(s)	386
Bsp1286I	GDGCHC	3 cut(s)	80, 297, 390
Bsp143I	GATC	8 cut(s)	63, 549, 581, 781, 872, 975, 1114, 1250
Bsp19I	CCATGG	2 cut(s)	316, 1136
BspACI	CCGC	3 cut(s)	555, 594, 1436
BspANI	GGCC	9 cut(s)	315, 321, 388, 576, 905, 953, 1224, 1466, 1476
BspCNI	CTCAG	2 cut(s)	66, 1084
BspDI	ATCGAT	1 cut(s)	978
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	6 cut(s)	200, 387, 388, 577, 1225, 1477
BspMAI	CTGCAG	1 cut(s)	1330
BspMI	ACCTGC	1 cut(s)	733
BspPI	GGATC	1 cut(s)	557
BspT107I	GGYRCC	1 cut(s)	198
BspTI	CTTAAG	1 cut(s)	380
BsrDI	GCAATG	1 cut(s)	594
BsrI	ACTGG	8 cut(s)	14, 202, 896, 910, 1241, 1348, 1463, 1487
BssECI	CCNNGG	4 cut(s)	316, 331, 696, 1136
BssMI	GATC	8 cut(s)	63, 549, 581, 781, 872, 975, 1114, 1250
BssT1I	CCWWGG	2 cut(s)	316, 1136
Bst2UI	CCWGG	4 cut(s)	332, 398, 968, 1539
Bst4CI	ACNGT	5 cut(s)	88, 238, 523, 866, 1581
Bst6I	CTCTTC	1 cut(s)	1342
BstAFI	CTTAAG	1 cut(s)	380
BstAPI	GCANNNNNTGC	2 cut(s)	725, 1532
BstC8I	GCNNGC	6 cut(s)	174, 557, 561, 598, 907, 1464
BstDEI	CTNAG	2 cut(s)	74, 1092
BstDSI	CCRYGG	2 cut(s)	316, 1136
BstF5I	GGATG	6 cut(s)	7, 226, 1026, 1129, 1200, 1227
BstKTI	GATC	8 cut(s)	66, 552, 584, 784, 875, 978, 1117, 1253
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	8 cut(s)	63, 549, 581, 781, 872, 975, 1114, 1250
BstMWI	GCNNNNNNNGC	3 cut(s)	593, 725, 1532
BstNI	CCWGG	4 cut(s)	332, 398, 968, 1539
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	6 cut(s)	330, 396, 695, 696, 966, 1537
BstSFI	CTRYAG	1 cut(s)	1326
BstSLI	GKGCMC	1 cut(s)	390
BstV1I	GCAGC	5 cut(s)	188, 289, 292, 731, 779
BstV2I	GAAGAC	1 cut(s)	1461
BstX2I	RGATCY	1 cut(s)	1114
BstXI	CCANNNNNNTGG	2 cut(s)	498, 1137
BstYI	RGATCY	1 cut(s)	1114
Bsu15I	ATCGAT	1 cut(s)	978
BsuRI	GGCC	9 cut(s)	315, 321, 388, 576, 905, 953, 1224, 1466, 1476
BsuTUI	ATCGAT	1 cut(s)	978
BtgI	CCRYGG	2 cut(s)	316, 1136
BtsCI	GGATG	6 cut(s)	7, 226, 1026, 1129, 1200, 1227
BtsIMutI	CAGTG	1 cut(s)	1480
BveI	ACCTGC	1 cut(s)	733
Cac8I	GCNNGC	6 cut(s)	174, 557, 561, 598, 907, 1464
CaiI	CAGNNNCTG	2 cut(s)	305, 725
CciI	TCATGA	1 cut(s)	60
Cfr13I	GGNCC	7 cut(s)	281, 386, 387, 575, 1223, 1465, 1475
Cfr9I	CCCGGG	1 cut(s)	696
ClaI	ATCGAT	1 cut(s)	978
Csp6I	GTAC	3 cut(s)	199, 531, 1082
CspCI	CAANNNNNGTGG	2 cut(s)	1024, 1059
CviAII	CATG	8 cut(s)	61, 173, 317, 464, 498, 572, 656, 1137
CviQI	GTAC	3 cut(s)	199, 531, 1082
DdeI	CTNAG	2 cut(s)	74, 1092
DpnI	GATC	8 cut(s)	65, 551, 583, 783, 874, 977, 1116, 1252
DpnII	GATC	8 cut(s)	63, 549, 581, 781, 872, 975, 1114, 1250
EaeI	YGGCCR	2 cut(s)	319, 951
Eam1104I	CTCTTC	1 cut(s)	1342
EarI	CTCTTC	1 cut(s)	1342
EciI	GGCGGA	1 cut(s)	583
Ecl136II	GAGCTC	2 cut(s)	78, 295
Eco130I	CCWWGG	2 cut(s)	316, 1136
Eco24I	GRGCYC	3 cut(s)	80, 297, 390
Eco47I	GGWCC	1 cut(s)	281
Eco53kI	GAGCTC	2 cut(s)	78, 295
Eco88I	CYCGRG	4 cut(s)	180, 696, 777, 1182
EcoICRI	GAGCTC	2 cut(s)	78, 295
EcoO109I	RGGNCCY	2 cut(s)	281, 386
EcoRI	GAATTC	2 cut(s)	1386, 1394
EcoRII	CCWGG	4 cut(s)	330, 396, 966, 1537
EcoT14I	CCWWGG	2 cut(s)	316, 1136
EcoT38I	GRGCYC	3 cut(s)	80, 297, 390
ErhI	CCWWGG	2 cut(s)	316, 1136
FaeI	CATG	8 cut(s)	64, 176, 320, 467, 501, 575, 659, 1140
FaqI	GGGAC	1 cut(s)	1274
FatI	CATG	8 cut(s)	60, 172, 316, 463, 497, 571, 655, 1136
FauI	CCCGC	1 cut(s)	548
FauNDI	CATATG	1 cut(s)	421
Fnu4HI	GCNGC	5 cut(s)	177, 303, 306, 720, 768
FokI	GGATG	5 cut(s)	213, 1013, 1136, 1187, 1214
FriOI	GRGCYC	3 cut(s)	80, 297, 390
Fsp4HI	GCNGC	5 cut(s)	177, 303, 306, 720, 768
FspBI	CTAG	4 cut(s)	309, 944, 1391, 1590
GluI	GCNGC	5 cut(s)	177, 303, 306, 720, 768
GsaI	CCCAGC	1 cut(s)	549
GsuI	CTGGAG	2 cut(s)	314, 1521
HaeIII	GGCC	9 cut(s)	315, 321, 388, 576, 905, 953, 1224, 1466, 1476
HapII	CCGG	2 cut(s)	697, 1286
Hin1II	CATG	8 cut(s)	64, 176, 320, 467, 501, 575, 659, 1140
HincII	GTYRAC	2 cut(s)	1000, 1246
HindII	GTYRAC	2 cut(s)	1000, 1246
HindIII	AAGCTT	2 cut(s)	55, 469
HinfI	GANTC	2 cut(s)	374, 1046
HpaI	GTTAAC	1 cut(s)	1246
HpaII	CCGG	2 cut(s)	697, 1286
HphI	GGTGA	2 cut(s)	11, 452
Hpy166II	GTNNAC	5 cut(s)	19, 97, 403, 1000, 1246
Hpy188III	TCNNGA	6 cut(s)	61, 73, 161, 785, 992, 1391
Hpy8I	GTNNAC	5 cut(s)	19, 97, 403, 1000, 1246
Hpy99I	CGWCG	2 cut(s)	647, 827
HpyAV	CCTTC	6 cut(s)	32, 129, 137, 821, 1041, 1579
HpyCH4III	ACNGT	5 cut(s)	88, 238, 523, 866, 1581
HpyCH4IV	ACGT	1 cut(s)	822
HpyCH4V	TGCA	6 cut(s)	176, 425, 463, 728, 1328, 1498
HpyF10VI	GCNNNNNNNGC	3 cut(s)	593, 725, 1532
HpyF3I	CTNAG	2 cut(s)	74, 1092
HpySE526I	ACGT	1 cut(s)	822
Hsp92II	CATG	8 cut(s)	64, 176, 320, 467, 501, 575, 659, 1140
KpnI	GGTACC	1 cut(s)	202
KspAI	GTTAAC	1 cut(s)	1246
Kzo9I	GATC	8 cut(s)	63, 549, 581, 781, 872, 975, 1114, 1250
LmnI	GCTCC	2 cut(s)	787, 1540
Lsp1109I	GCAGC	5 cut(s)	188, 289, 292, 731, 779
LweI	GCATC	3 cut(s)	16, 696, 799
MaeI	CTAG	4 cut(s)	309, 944, 1391, 1590
MaeII	ACGT	1 cut(s)	822
MaeIII	GTNAC	5 cut(s)	82, 339, 609, 619, 1054
MalI	GATC	8 cut(s)	65, 551, 583, 783, 874, 977, 1116, 1252
MboI	GATC	8 cut(s)	63, 549, 581, 781, 872, 975, 1114, 1250
MboII	GAAGA	4 cut(s)	939, 1139, 1329, 1466
MflI	RGATCY	1 cut(s)	1114
MhlI	GDGCHC	3 cut(s)	80, 297, 390
MlsI	TGGCCA	2 cut(s)	321, 953
MluCI	AATT	8 cut(s)	412, 817, 1016, 1167, 1371, 1386, 1394, 1490
MluNI	TGGCCA	2 cut(s)	321, 953
MlyI	GAGTC	1 cut(s)	1055
MmeI	TCCRAC	3 cut(s)	592, 693, 848
Mox20I	TGGCCA	2 cut(s)	321, 953
MscI	TGGCCA	2 cut(s)	321, 953
MseI	TTAA	5 cut(s)	125, 381, 816, 1245, 1370
MslI	CAYNNNNRTG	2 cut(s)	368, 1135
Msp20I	TGGCCA	2 cut(s)	321, 953
MspA1I	CMGCKG	3 cut(s)	302, 555, 600
MspCI	CTTAAG	1 cut(s)	380
MspI	CCGG	2 cut(s)	697, 1286
MspR9I	CCNGG	6 cut(s)	332, 398, 697, 698, 968, 1539
Mva1269I	GAATGC	2 cut(s)	563, 1313
MvaI	CCWGG	4 cut(s)	332, 398, 968, 1539
MwoI	GCNNNNNNNGC	3 cut(s)	593, 725, 1532
NciI	CCSGG	2 cut(s)	697, 698
NcoI	CCATGG	2 cut(s)	316, 1136
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	8 cut(s)	63, 549, 581, 781, 872, 975, 1114, 1250
NlaIII	CATG	8 cut(s)	64, 176, 320, 467, 501, 575, 659, 1140
NlaIV	GGNNCC	6 cut(s)	200, 387, 388, 577, 1225, 1477
NmuCI	GTSAC	1 cut(s)	339
NspI	RCATGY	1 cut(s)	176
PaeI	GCATGC	1 cut(s)	176
PaeR7I	CTCGAG	1 cut(s)	1182
PagI	TCATGA	1 cut(s)	60
PaqCI	CACCTGC	1 cut(s)	733
PctI	GAATGC	2 cut(s)	563, 1313
PfeI	GAWTC	1 cut(s)	374
PflFI	GACNNNGTC	1 cut(s)	675
PfoI	TCCNGGA	1 cut(s)	1537
PkrI	GCNGC	5 cut(s)	178, 304, 307, 721, 769
PleI	GAGTC	1 cut(s)	1054
PpsI	GAGTC	1 cut(s)	1054
PpuMI	RGGWCCY	1 cut(s)	281
Psp124BI	GAGCTC	2 cut(s)	80, 297
Psp5II	RGGWCCY	1 cut(s)	281
Psp6I	CCWGG	4 cut(s)	330, 396, 966, 1537
PspFI	CCCAGC	1 cut(s)	545
PspGI	CCWGG	4 cut(s)	330, 396, 966, 1537
PspN4I	GGNNCC	6 cut(s)	200, 387, 388, 577, 1225, 1477
PspOMI	GGGCCC	1 cut(s)	386
PspPI	GGNCC	7 cut(s)	281, 386, 387, 575, 1223, 1465, 1475
PspPPI	RGGWCCY	1 cut(s)	281
PspXI	VCTCGAGB	1 cut(s)	1182
PstI	CTGCAG	1 cut(s)	1330
PstNI	CAGNNNCTG	2 cut(s)	305, 725
PsuI	RGATCY	1 cut(s)	1114
PsyI	GACNNNGTC	1 cut(s)	675
PvuII	CAGCTG	2 cut(s)	302, 600
RsaI	GTAC	3 cut(s)	200, 532, 1083
RsaNI	GTAC	3 cut(s)	199, 531, 1082
RseI	CAYNNNNRTG	2 cut(s)	368, 1135
SacI	GAGCTC	2 cut(s)	80, 297
SaqAI	TTAA	5 cut(s)	125, 381, 816, 1245, 1370
SatI	GCNGC	5 cut(s)	177, 303, 306, 720, 768
Sau3AI	GATC	8 cut(s)	63, 549, 581, 781, 872, 975, 1114, 1250
Sau96I	GGNCC	7 cut(s)	281, 386, 387, 575, 1223, 1465, 1475
SchI	GAGTC	1 cut(s)	1055
ScrFI	CCNGG	6 cut(s)	332, 398, 697, 698, 968, 1539
SduI	GDGCHC	3 cut(s)	80, 297, 390
SfaNI	GCATC	3 cut(s)	16, 696, 799
SfcI	CTRYAG	1 cut(s)	1326
Sfr274I	CTCGAG	1 cut(s)	1182
SinI	GGWCC	1 cut(s)	281
SlaI	CTCGAG	1 cut(s)	1182
SmaI	CCCGGG	1 cut(s)	698
SmiMI	CAYNNNNRTG	2 cut(s)	368, 1135
SmlI	CTYRAG	2 cut(s)	380, 1182
SmoI	CTYRAG	2 cut(s)	380, 1182
SphI	GCATGC	1 cut(s)	176
Sse9I	AATT	8 cut(s)	412, 817, 1016, 1167, 1371, 1386, 1394, 1490
SsiI	CCGC	3 cut(s)	555, 594, 1436
SspI	AATATT	2 cut(s)	708, 1551
SspMI	CTAG	4 cut(s)	309, 944, 1391, 1590
SstI	GAGCTC	2 cut(s)	80, 297
StyD4I	CCNGG	6 cut(s)	330, 396, 695, 696, 966, 1537
StyI	CCWWGG	2 cut(s)	316, 1136
TaaI	ACNGT	5 cut(s)	88, 238, 523, 866, 1581
TaiI	ACGT	1 cut(s)	825
TaqI	TCGA	3 cut(s)	825, 978, 1183
TasI	AATT	8 cut(s)	412, 817, 1016, 1167, 1371, 1386, 1394, 1490
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	5 cut(s)	125, 381, 816, 1245, 1370
Tru9I	TTAA	5 cut(s)	125, 381, 816, 1245, 1370
TscAI	CASTG	1 cut(s)	1487
TseFI	GTSAC	1 cut(s)	339
TseI	GCWGC	5 cut(s)	176, 302, 305, 719, 767
Tsp45I	GTSAC	1 cut(s)	339
TspDTI	ATGAA	7 cut(s)	49, 50, 111, 480, 644, 1112, 1160
TspGWI	ACGGA	1 cut(s)	1264
TspMI	CCCGGG	1 cut(s)	696
TspRI	CASTG	1 cut(s)	1487
Tth111I	GACNNNGTC	1 cut(s)	675
Vha464I	CTTAAG	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	281
XapI	RAATTY	5 cut(s)	412, 1167, 1386, 1394, 1490
XbaI	TCTAGA	1 cut(s)	1390
XceI	RCATGY	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	404
XhoI	CTCGAG	1 cut(s)	1182
XmaI	CCCGGG	1 cut(s)	696
XspI	CTAG	4 cut(s)	309, 944, 1391, 1590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.