Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014433

Physical Location & Seq

Genomic Coordinates Reverse (-)

14468263 .. 14472386

Gene Structure 4124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCGGCATCAGGCGGAGGCGTGGAGTGGCACGTGCGTCCCCCGAACCCTAAGAACCCAGTCGTCTTCTTCGACATCACCATCGGTACCATCCCCGCTGGCCGCATCAAGATGGAGCTCTTCGCGGATATCGCCCCTAAAACCGCCGAGAATTTCAGGCAACTCTGCACCGGCGAGTACAGAAAAGCTGGATTGCCGGTTGGATACAAGGGGTGCCAGTTCCACAGGGTCATTAAGGATTTTATGATTCAAGCTGGGGATTTTCTCAAGGGAGATGGTAGCGGATGTGTTTCCATTTATGGACTTAAGTTTGATGATGAGAATTTCGATGCCAAACACACTGGTCCCGGACTCTTGTCAATGGCAAATAGTGGACCAAATACCAATGGGTGCCAGTTCTTTATAACTTGCGCGAAATGTGACTGGCTTGACAATAAGCATGTTGTTTTTGGGAGAGTACTTGGAGATGGGCTTTTGGTTGTTAGGAAGATTGAGAATGTGGCTACGGGACCCAATAATCGCCCTAAACTAGCCTGTGTTATTGCTGAATGTGGGGAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0006139 GO:0006396 GO:0006397 GO:0006457 GO:0006464 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016018 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0033218 GO:0034641 GO:0036211 GO:0042277 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043900 GO:0043902 GO:0043903 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045069 GO:0045070 GO:0046483 GO:0046540 GO:0048518 GO:0048524 GO:0050789 GO:0050792 GO:0065003 GO:0065007 GO:0070013 GO:0071001 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:0140096 GO:1901360 GO:1901564 GO:1903900 GO:1903902 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

187

Amino Acids

20.27

Weight (kDa)

8.1

Isoelectric Point (pI)

21.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	24 - 185	3.1e-48	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38730
fragaria_vesca	FvH4_7g03600 FvH4_7g03600
malus_domestica	MD02G1278600.v1.1 MD07G1046700.v1.1
prunus_persica	Prupe.2G041900_v2.0.a1
pyrus_communis	pycom02g23890 pycom07g03370
rosa_chinensis	RchiOBHm_Chr1g0326221
rosa_laevigata	RLG00000030082
rosa_multiflora	Rmu_sc0000028.1_g000002 Rmu_sc0004192.1_g000028
rosa_roxburghii	Rroxscaffold_4G00323940
rosa_rugosa	Rorug01G0057800
rosa_samantha	Rh1AG074700 Rh1BG060200
rosa_wichuraiana	Rw1G006000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	404
Acc65I	GGTACC	1 cut(s)	86
AccB1I	GGYRCC	3 cut(s)	86, 213, 390
AccII	CGCG	2 cut(s)	125, 413
AciI	CCGC	7 cut(s)	5, 15, 96, 103, 125, 144, 282
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	2 cut(s)	151, 322
AcvI	CACGTG	1 cut(s)	34
AfaI	GTAC	3 cut(s)	88, 179, 459
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	251
AluBI	AGCT	3 cut(s)	118, 188, 254
AluI	AGCT	3 cut(s)	118, 188, 254
Alw21I	GWGCWC	1 cut(s)	120
AoxI	GGCC	1 cut(s)	100
ApoI	RAATTY	2 cut(s)	151, 322
Asp718I	GGTACC	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	413
AspS9I	GGNCC	3 cut(s)	344, 374, 509
AsuC2I	CCSGG	1 cut(s)	348
AsuHPI	GGTGA	1 cut(s)	70
AvaII	GGWCC	3 cut(s)	344, 374, 509
BanI	GGYRCC	3 cut(s)	86, 213, 390
BanII	GRGCYC	1 cut(s)	120
BbrPI	CACGTG	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	120
BccI	CCATC	5 cut(s)	89, 98, 106, 269, 461
BciVI	GTATCC	1 cut(s)	197
BcnI	CCSGG	1 cut(s)	348
BfaI	CTAG	1 cut(s)	530
BfrI	CTTAAG	1 cut(s)	305
BfuI	GTATCC	1 cut(s)	197
BisI	GCNGC	2 cut(s)	6, 103
BlsI	GCNGC	2 cut(s)	7, 104
BmcAI	AGTACT	1 cut(s)	459
Bme1390I	CCNGG	1 cut(s)	348
Bme18I	GGWCC	3 cut(s)	344, 374, 509
BmgT120I	GGNCC	3 cut(s)	344, 374, 509
BmiI	GGNNCC	6 cut(s)	88, 215, 346, 392, 510, 511
BmrFI	CCNGG	1 cut(s)	348
BmrI	ACTGGG	1 cut(s)	53
BmsI	GCATC	3 cut(s)	17, 114, 319
BmuI	ACTGGG	1 cut(s)	53
BoxI	GACNNNNGTC	1 cut(s)	355
BpiI	GAAGAC	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	348
BsaAI	YACGTR	1 cut(s)	34
Bse118I	RCCGGY	2 cut(s)	170, 196
Bse1I	ACTGG	5 cut(s)	59, 217, 346, 394, 428
BseGI	GGATG	2 cut(s)	90, 290
BseNI	ACTGG	5 cut(s)	59, 217, 346, 394, 428
BseYI	CCCAGC	1 cut(s)	254
BsgI	GTGCAG	1 cut(s)	151
Bsh1236I	CGCG	2 cut(s)	125, 413
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	3 cut(s)	86, 213, 390
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	3 cut(s)	171, 197, 348
BslFI	GGGAC	3 cut(s)	24, 330, 522
BsmFI	GGGAC	3 cut(s)	24, 330, 522
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	120
BspACI	CCGC	7 cut(s)	5, 15, 96, 103, 125, 144, 282
BspANI	GGCC	1 cut(s)	102
BspFNI	CGCG	2 cut(s)	125, 413
BspLI	GGNNCC	6 cut(s)	88, 215, 346, 392, 510, 511
BspQI	GCTCTTC	1 cut(s)	125
BspT107I	GGYRCC	3 cut(s)	86, 213, 390
BspTI	CTTAAG	1 cut(s)	305
BsrFI	RCCGGY	2 cut(s)	170, 196
BsrI	ACTGG	5 cut(s)	59, 217, 346, 394, 428
BssAI	RCCGGY	2 cut(s)	170, 196
Bst6I	CTCTTC	1 cut(s)	125
BstAFI	CTTAAG	1 cut(s)	305
BstBAI	YACGTR	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	90, 290
BstFNI	CGCG	2 cut(s)	125, 413
BstHHI	GCGC	1 cut(s)	413
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	443
BstPAI	GACNNNNGTC	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	346
BstUI	CGCG	2 cut(s)	125, 413
BstV2I	GAAGAC	1 cut(s)	58
BsuI	GTATCC	1 cut(s)	197
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	90, 290
BtsIMutI	CAGTG	1 cut(s)	339
Cac8I	GCNNGC	1 cut(s)	100
CfoI	GCGC	1 cut(s)	413
Cfr10I	RCCGGY	2 cut(s)	170, 196
Cfr13I	GGNCC	3 cut(s)	344, 374, 509
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	3 cut(s)	87, 178, 458
CviAII	CATG	1 cut(s)	440
CviJI	RGCY	8 cut(s)	102, 118, 188, 254, 427, 472, 503, 533
CviKI_1	RGCY	8 cut(s)	102, 118, 188, 254, 427, 472, 503, 533
CviQI	GTAC	3 cut(s)	87, 178, 458
DdeI	CTNAG	1 cut(s)	51
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
EciI	GGCGGA	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	120
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	3 cut(s)	344, 374, 509
Eco53kI	GAGCTC	1 cut(s)	118
Eco72I	CACGTG	1 cut(s)	34
EcoICRI	GAGCTC	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	509
EcoRV	GATATC	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	120
FaeI	CATG	1 cut(s)	443
FaiI	YATR	4 cut(s)	245, 300, 404, 441
FaqI	GGGAC	3 cut(s)	24, 330, 522
FatI	CATG	1 cut(s)	439
FauI	CCCGC	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	6, 103
FokI	GGATG	2 cut(s)	77, 297
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	2 cut(s)	6, 103
FspBI	CTAG	1 cut(s)	530
GlaI	GCGC	1 cut(s)	412
GluI	GCNGC	2 cut(s)	6, 103
GsaI	CCCAGC	1 cut(s)	258
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	3 cut(s)	171, 197, 348
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	413
Hin1II	CATG	1 cut(s)	443
Hin6I	GCGC	1 cut(s)	411
HinP1I	GCGC	1 cut(s)	411
HinfI	GANTC	2 cut(s)	247, 351
HpaII	CCGG	3 cut(s)	171, 197, 348
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	374
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	443
HspAI	GCGC	1 cut(s)	411
KflI	GGGWCCC	1 cut(s)	509
KpnI	GGTACC	1 cut(s)	90
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	1 cut(s)	115
LweI	GCATC	3 cut(s)	17, 114, 319
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	419
MboII	GAAGA	4 cut(s)	58, 61, 112, 499
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	2 cut(s)	151, 322
MlyI	GAGTC	1 cut(s)	345
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	1 cut(s)	11
MseI	TTAA	2 cut(s)	234, 306
MslI	CAYNNNNRTG	1 cut(s)	110
MspA1I	CMGCKG	1 cut(s)	98
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	3 cut(s)	171, 197, 348
MspR9I	CCNGG	1 cut(s)	348
MvnI	CGCG	2 cut(s)	125, 413
MwoI	GCNNNNNNNGC	1 cut(s)	131
NciI	CCSGG	1 cut(s)	348
NlaIII	CATG	1 cut(s)	443
NlaIV	GGNNCC	6 cut(s)	88, 215, 346, 392, 510, 511
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	419
NspI	RCATGY	1 cut(s)	443
PciSI	GCTCTTC	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	247
PfoI	TCCNGGA	1 cut(s)	346
PkrI	GCNGC	2 cut(s)	7, 104
PleI	GAGTC	1 cut(s)	345
PmaCI	CACGTG	1 cut(s)	34
PmlI	CACGTG	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	345
Ppu21I	YACGTR	1 cut(s)	34
PpuMI	RGGWCCY	1 cut(s)	509
PshAI	GACNNNNGTC	1 cut(s)	355
PsiI	TTATAA	1 cut(s)	404
Psp124BI	GAGCTC	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	509
PspCI	CACGTG	1 cut(s)	34
PspFI	CCCAGC	1 cut(s)	254
PspN4I	GGNNCC	6 cut(s)	88, 215, 346, 392, 510, 511
PspPI	GGNCC	3 cut(s)	344, 374, 509
PspPPI	RGGWCCY	1 cut(s)	509
RsaI	GTAC	3 cut(s)	88, 179, 459
RsaNI	GTAC	3 cut(s)	87, 178, 458
RseI	CAYNNNNRTG	1 cut(s)	110
SacI	GAGCTC	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	234, 306
SatI	GCNGC	2 cut(s)	6, 103
Sau96I	GGNCC	3 cut(s)	344, 374, 509
ScaI	AGTACT	1 cut(s)	459
SchI	GAGTC	1 cut(s)	345
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	4 cut(s)	36, 120, 190, 256
SfaNI	GCATC	3 cut(s)	17, 114, 319
SgrAI	CRCCGGYG	1 cut(s)	170
SinI	GGWCC	3 cut(s)	344, 374, 509
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	2 cut(s)	266, 305
SmoI	CTYRAG	2 cut(s)	266, 305
Sse9I	AATT	2 cut(s)	151, 322
SsiI	CCGC	7 cut(s)	5, 15, 96, 103, 125, 144, 282
SspMI	CTAG	1 cut(s)	530
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	346
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	72, 327
TasI	AATT	2 cut(s)	151, 322
TatI	WGTACW	2 cut(s)	177, 457
TauI	GCSGC	2 cut(s)	8, 105
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	2 cut(s)	234, 306
Tru9I	TTAA	2 cut(s)	234, 306
TscAI	CASTG	1 cut(s)	346
TseFI	GTSAC	1 cut(s)	419
Tsp45I	GTSAC	1 cut(s)	419
TspRI	CASTG	1 cut(s)	346
Vha464I	CTTAAG	1 cut(s)	305
VpaK11BI	GGWCC	3 cut(s)	344, 374, 509
XapI	RAATTY	2 cut(s)	151, 322
XceI	RCATGY	1 cut(s)	443
XspI	CTAG	1 cut(s)	530
ZrmI	AGTACT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.