Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020265

Physical Location & Seq

Genomic Coordinates Reverse (-)

19297494 .. 19297913

Gene Structure 420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAGAAAAAGAACAGAAAGCCGAACCAATATACAGAAGTAGCCGCTTCAGGCCAACATCTATGTATTTCTGCTCACAAAGCGAGAAGAGTAATTGATCAAATTCGTGGGCGTTCCTATGAAGAAACACTTATGATACTAGAACTCATGCCTTATCGAGCATGTTATGACATTTTAAAATTGGTTTATTCTGTAGCAGCAAACGCTAATCACAATAAAGGTTTGAATGAAACAAGTTTAATCATTAGTAAAGCTGAAGTCAACGAGGGCACGACTGTGAAAAAATTAAAACCCCGAGCTCGAGGGCCGGGTTATCCGATAAGAAGATCCACCTGTCATATAACTATTGTGTTGAAAGATATATCTGTAGATGAACAACTAGAAAAAGATAAAAGGACAAAAGAGCGGAGGAATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0015934 GO:0031967 GO:0031974 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0098798 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

139

Amino Acids

15.93

Weight (kDa)

9.77

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22	PF00237	16 - 119	4.5e-31	Ribosomal protein L22p/L17e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0020265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00810
rosa_chinensis	RchiOBHm_Chr1g0329561 RchiOBHm_Chr5g0025841 RchiOBHm_Chr6g0286361 RchiOBHm_CPg0501841
rosa_wichuraiana	Rw7G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	406
AciI	CCGC	2 cut(s)	45, 406
AclWI	GGATC	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	102
AcuI	CTGAAG	2 cut(s)	33, 276
AgsI	TTSAA	2 cut(s)	226, 355
AleI	CACNNNNGTG	1 cut(s)	275
AluBI	AGCT	2 cut(s)	254, 299
AluI	AGCT	2 cut(s)	254, 299
Alw21I	GWGCWC	1 cut(s)	301
AlwI	GGATC	1 cut(s)	321
Ama87I	CYCGRG	2 cut(s)	294, 300
AoxI	GGCC	2 cut(s)	52, 305
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	305
AsuC2I	CCSGG	1 cut(s)	309
AvaI	CYCGRG	2 cut(s)	294, 300
BaeGI	GKGCMC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	209
BclI	TGATCA	1 cut(s)	97
BcnI	CCSGG	1 cut(s)	309
BfaI	CTAG	2 cut(s)	140, 380
BfmI	CTRYAG	2 cut(s)	192, 366
BisI	GCNGC	2 cut(s)	45, 198
BlsI	GCNGC	2 cut(s)	46, 199
Bme1390I	CCNGG	1 cut(s)	309
BmeT110I	CYCGRG	2 cut(s)	294, 300
BmgT120I	GGNCC	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	309
BseSI	GKGCMC	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	209
BshFI	GGCC	2 cut(s)	54, 307
BsiHKAI	GWGCWC	1 cut(s)	301
BsiHKCI	CYCGRG	2 cut(s)	294, 300
BsiSI	CCGG	1 cut(s)	308
BsnI	GGCC	2 cut(s)	54, 307
BsoBI	CYCGRG	2 cut(s)	294, 300
Bsp1286I	GDGCHC	2 cut(s)	272, 301
Bsp143I	GATC	2 cut(s)	97, 326
BspACI	CCGC	2 cut(s)	45, 406
BspANI	GGCC	2 cut(s)	54, 307
BspPI	GGATC	1 cut(s)	321
BsrBI	CCGCTC	1 cut(s)	406
BssMI	GATC	2 cut(s)	97, 326
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	82
BstKTI	GATC	2 cut(s)	100, 329
BstMBI	GATC	2 cut(s)	97, 326
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 203
BstNSI	RCATGY	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	307
BstSFI	CTRYAG	2 cut(s)	192, 366
BstSLI	GKGCMC	1 cut(s)	272
BstV1I	GCAGC	1 cut(s)	209
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	54, 307
Cfr13I	GGNCC	1 cut(s)	305
CviAII	CATG	2 cut(s)	148, 162
CviJI	RGCY	6 cut(s)	22, 44, 54, 254, 299, 307
CviKI_1	RGCY	6 cut(s)	22, 44, 54, 254, 299, 307
DpnI	GATC	2 cut(s)	99, 328
DpnII	GATC	2 cut(s)	97, 326
DraI	TTTAAA	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	301
Eco53kI	GAGCTC	1 cut(s)	299
Eco57I	CTGAAG	2 cut(s)	33, 276
Eco88I	CYCGRG	2 cut(s)	294, 300
EcoICRI	GAGCTC	1 cut(s)	299
EcoT38I	GRGCYC	1 cut(s)	301
FaeI	CATG	2 cut(s)	151, 165
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FatI	CATG	2 cut(s)	147, 161
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	2 cut(s)	45, 198
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	2 cut(s)	45, 198
FspBI	CTAG	2 cut(s)	140, 380
GluI	GCNGC	2 cut(s)	45, 198
HaeIII	GGCC	2 cut(s)	54, 307
HapII	CCGG	1 cut(s)	308
Hin1II	CATG	2 cut(s)	151, 165
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HpaII	CCGG	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	1 cut(s)	318
Hpy8I	GTNNAC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 203
Hsp92II	CATG	2 cut(s)	151, 165
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	97, 326
LpnPI	CCDG	3 cut(s)	36, 321, 346
Lsp1109I	GCAGC	1 cut(s)	209
MaeI	CTAG	2 cut(s)	140, 380
MalI	GATC	2 cut(s)	99, 328
MbiI	CCGCTC	1 cut(s)	406
MboI	GATC	2 cut(s)	97, 326
MboII	GAAGA	3 cut(s)	99, 134, 336
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	2 cut(s)	272, 301
MluCI	AATT	4 cut(s)	93, 102, 179, 284
MnlI	CCTC	3 cut(s)	259, 296, 402
MseI	TTAA	4 cut(s)	176, 239, 287, 418
MslI	CAYNNNNRTG	1 cut(s)	275
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	80, 203
NciI	CCSGG	1 cut(s)	309
NdeII	GATC	2 cut(s)	97, 326
NlaIII	CATG	2 cut(s)	151, 165
NspI	RCATGY	1 cut(s)	165
OliI	CACNNNNGTG	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	300
PkrI	GCNGC	2 cut(s)	46, 199
Psp124BI	GAGCTC	1 cut(s)	301
PspPI	GGNCC	1 cut(s)	305
PspXI	VCTCGAGB	1 cut(s)	300
PsuI	RGATCY	1 cut(s)	326
RseI	CAYNNNNRTG	1 cut(s)	275
SacI	GAGCTC	1 cut(s)	301
SaqAI	TTAA	4 cut(s)	176, 239, 287, 418
SatI	GCNGC	2 cut(s)	45, 198
Sau3AI	GATC	2 cut(s)	97, 326
Sau96I	GGNCC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	2 cut(s)	272, 301
SetI	ASST	4 cut(s)	223, 256, 301, 335
SfcI	CTRYAG	2 cut(s)	192, 366
Sfr274I	CTCGAG	1 cut(s)	300
SlaI	CTCGAG	1 cut(s)	300
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	300
SmoI	CTYRAG	1 cut(s)	300
Sse9I	AATT	4 cut(s)	93, 102, 179, 284
SsiI	CCGC	2 cut(s)	45, 406
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	2 cut(s)	140, 380
SstI	GAGCTC	1 cut(s)	301
StyD4I	CCNGG	1 cut(s)	307
TaaI	ACNGT	1 cut(s)	277
TaqI	TCGA	2 cut(s)	157, 301
TasI	AATT	4 cut(s)	93, 102, 179, 284
TauI	GCSGC	1 cut(s)	47
Tru1I	TTAA	4 cut(s)	176, 239, 287, 418
Tru9I	TTAA	4 cut(s)	176, 239, 287, 418
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	3 cut(s)	135, 243, 387
XapI	RAATTY	1 cut(s)	102
XceI	RCATGY	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	300
XspI	CTAG	2 cut(s)	140, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.