RchiOBHm_Chr1g0333081

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0020432
Physical Location & Seq
Forward (+)
25009330 .. 25010442
1113 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 501 bp
ATGAGATTGCCTATCAGGTTATTGCCTCATCTCATATTGACTAGTGGATTTTGTGGTTTAGCTGGTGTTGCCAAGCTGGAAACTTTGGTATCTGTATCGACTGACAAGCTGGAGCTAAAGGTCTACGGTTTCAATGACAAGCTTCCAGCTCTGTTGTCAAAGATTCTGAAAACAACCAAAAGTTTCATGCCAATTTCTGATTGTTTCATGATATGCTTAGTCATTCATCCCCTGCTATCCACTCTATGTCTGGTTTTTAAGTTTCATATAGATAAGAATACCTTGCTGGTTTCGGGCTTGTTTATGACAGTTACACTTAACAGGTTATTAAATGTTGATATGCAAGTATATGTCTGGCTATACAAAACAGGAAGCAGAACGATTCAGAAGCATTCAGAAGGAGGATGTCATGAACCGGTACAAAACAAATTTGCAACAGTCATCTCCCAAGTGTCGGAGACTGACTTGCAATTCGTGTTTGGGGATGCAAAACAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

166

Amino Acids

18.58

Weight (kDa)

9.01

Isoelectric Point (pI)

27.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M16_M PF16187 21 - 71 6.7e-09 Middle or third domain of peptidase_M16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020432)

Species Orthologous Gene IDs
pyrus_communis pycom02g24540
rosa_chinensis RchiOBHm_Chr1g0333081 RchiOBHm_Chr1g0334021 RchiOBHm_Chr1g0335171
rosa_roxburghii Rroxscaffold_4G00326810
rosa_samantha Rh1CG134000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 123
AcsI RAATTY 1 cut(s) 428
AfaI GTAC 1 cut(s) 420
AfiI CCNNNNNNNGG 1 cut(s) 454
AgeI ACCGGT 1 cut(s) 415
AgsI TTSAA 1 cut(s) 133
AhlI ACTAGT 1 cut(s) 41
AluBI AGCT 6 cut(s) 62, 76, 109, 115, 142, 149
AluI AGCT 6 cut(s) 62, 76, 109, 115, 142, 149
Alw26I GTCTC 1 cut(s) 452
ApoI RAATTY 1 cut(s) 428
ArsI GACNNNNNNTTYG 2 cut(s) 455, 487
AsiGI ACCGGT 1 cut(s) 415
BaeI ACNNNNGTAYC 2 cut(s) 72, 105
BcoDI GTCTC 1 cut(s) 452
BcuI ACTAGT 1 cut(s) 41
BfaI CTAG 1 cut(s) 42
BmsI GCATC 1 cut(s) 475
BpmI CTGGAG 1 cut(s) 131
BsaWI WCCGGW 1 cut(s) 415
Bsc4I CCNNNNNNNGG 1 cut(s) 454
Bse118I RCCGGY 1 cut(s) 415
BseGI GGATG 3 cut(s) 226, 410, 490
BseLI CCNNNNNNNGG 1 cut(s) 454
BshTI ACCGGT 1 cut(s) 415
BsiSI CCGG 1 cut(s) 416
BslI CCNNNNNNNGG 1 cut(s) 454
BsmAI GTCTC 1 cut(s) 452
BsmI GAATGC 1 cut(s) 391
BspHI TCATGA 2 cut(s) 207, 409
BsrFI RCCGGY 1 cut(s) 415
BssAI RCCGGY 1 cut(s) 415
Bst4CI ACNGT 3 cut(s) 128, 310, 439
BstDEI CTNAG 1 cut(s) 217
BstF5I GGATG 3 cut(s) 226, 410, 490
BstMAI GTCTC 1 cut(s) 452
BstMWI GCNNNNNNNGC 1 cut(s) 68
BtsCI GGATG 3 cut(s) 226, 410, 490
CciI TCATGA 2 cut(s) 207, 409
Cfr10I RCCGGY 1 cut(s) 415
Csp6I GTAC 1 cut(s) 419
CspAI ACCGGT 1 cut(s) 415
CviAII CATG 3 cut(s) 187, 208, 410
CviJI RGCY 8 cut(s) 62, 76, 109, 115, 142, 149, 297, 358
CviKI_1 RGCY 8 cut(s) 62, 76, 109, 115, 142, 149, 297, 358
CviQI GTAC 1 cut(s) 419
DdeI CTNAG 1 cut(s) 217
FaeI CATG 3 cut(s) 190, 211, 413
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FatI CATG 3 cut(s) 186, 207, 409
FblI GTMKAC 1 cut(s) 123
FokI GGATG 3 cut(s) 213, 417, 497
FspBI CTAG 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 131
HapII CCGG 1 cut(s) 416
Hin1II CATG 3 cut(s) 190, 211, 413
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 2 cut(s) 163, 382
HpaII CCGG 1 cut(s) 416
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 5 cut(s) 168, 199, 387, 397, 457
Hpy188III TCNNGA 2 cut(s) 208, 410
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 392
HpyCH4III ACNGT 3 cut(s) 128, 310, 439
HpyCH4V TGCA 4 cut(s) 343, 434, 469, 488
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 217
Hsp92II CATG 3 cut(s) 190, 211, 413
LmnI GCTCC 1 cut(s) 112
LweI GCATC 1 cut(s) 475
MaeI CTAG 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 310
MluCI AATT 3 cut(s) 192, 428, 470
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 2 cut(s) 36, 395
MseI TTAA 3 cut(s) 258, 318, 329
MspI CCGG 1 cut(s) 416
Mva1269I GAATGC 1 cut(s) 391
MwoI GCNNNNNNNGC 1 cut(s) 68
NlaIII CATG 3 cut(s) 190, 211, 413
PagI TCATGA 2 cut(s) 207, 409
PctI GAATGC 1 cut(s) 391
PfeI GAWTC 2 cut(s) 163, 382
PinAI ACCGGT 1 cut(s) 415
RsaI GTAC 1 cut(s) 420
RsaNI GTAC 1 cut(s) 419
SaqAI TTAA 3 cut(s) 258, 318, 329
SfaNI GCATC 1 cut(s) 475
SpeI ACTAGT 1 cut(s) 41
Sse9I AATT 3 cut(s) 192, 428, 470
SspMI CTAG 1 cut(s) 42
TaaI ACNGT 3 cut(s) 128, 310, 439
TaqI TCGA 1 cut(s) 98
TasI AATT 3 cut(s) 192, 428, 470
TfiI GAWTC 2 cut(s) 163, 382
Tru1I TTAA 3 cut(s) 258, 318, 329
Tru9I TTAA 3 cut(s) 258, 318, 329
TspDTI ATGAA 5 cut(s) 175, 196, 215, 254, 426
XapI RAATTY 1 cut(s) 428
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.