Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0020432

Physical Location & Seq

Genomic Coordinates Reverse (-)

59041860 .. 59046319

Gene Structure 4460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00326810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGGCACTTTTGATGGTTGGAGTCAAGGAGAGCATTTATCTGCGGAGTATGCAGGTTCTTTTAGCACATTCTCAACAACATTAATGCTGAGACCTGGAAGGTACTGGTCACTCAAATTTCCTCTTCTTCCTCCGTTTATTCATTCTGCTAGTGTTGCCAAGCTGGAAACTTCGGTATCTGTATTGAATGACAAGCTGGAGCTAAAGGTCTGCGGTTTCAATGACAAGCTTCCAGCTCTGTTGTCAAGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009889 GO:0009987 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0016051 GO:0019222 GO:0019252 GO:0030246 GO:0030247 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0033692 GO:0034637 GO:0034645 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901576 GO:2000112 GO:2000904 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

84

Amino Acids

9.34

Weight (kDa)

7.91

Isoelectric Point (pI)

29.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M16_M	PF16187	48 - 83	1.1e-06	Middle or third domain of peptidase_M16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0020432)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g24540
rosa_chinensis	RchiOBHm_Chr1g0333081 RchiOBHm_Chr1g0334021 RchiOBHm_Chr1g0335171
rosa_roxburghii	Rroxscaffold_4G00326810
rosa_samantha	Rh1CG134000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	44
AciI	CCGC	2 cut(s)	44, 213
AcsI	RAATTY	1 cut(s)	116
AfaI	GTAC	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	187, 220
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	5 cut(s)	163, 196, 202, 229, 236
AluI	AGCT	5 cut(s)	163, 196, 202, 229, 236
Alw26I	GTCTC	1 cut(s)	85
ApoI	RAATTY	1 cut(s)	116
AseI	ATTAAT	1 cut(s)	83
BaeGI	GKGCMC	1 cut(s)	8
BaeI	ACNNNNGTAYC	2 cut(s)	159, 192
BccI	CCATC	1 cut(s)	8
BciT130I	CCWGG	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	96
BpmI	CTGGAG	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	8
BsmAI	GTCTC	1 cut(s)	85
Bso31I	GGTCTC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	8
BspACI	CCGC	2 cut(s)	44, 213
BspCNI	CTCAG	1 cut(s)	81
BspMI	ACCTGC	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	110
Bst2UI	CCWGG	1 cut(s)	96
Bst6I	CTCTTC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	89
BstMAI	GTCTC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 155
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	94
BstSLI	GKGCMC	1 cut(s)	8
BveI	ACCTGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	103
CviJI	RGCY	5 cut(s)	163, 196, 202, 229, 236
CviKI_1	RGCY	5 cut(s)	163, 196, 202, 229, 236
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	94
FaiI	YATR	1 cut(s)	51
FspBI	CTAG	1 cut(s)	150
GsuI	CTGGAG	1 cut(s)	218
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	2 cut(s)	22, 249
Hpy188I	TCNGA	1 cut(s)	254
Hpy188III	TCNNGA	1 cut(s)	246
HpyAV	CCTTC	1 cut(s)	93
HpyCH4V	TGCA	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 155
HpyF3I	CTNAG	1 cut(s)	89
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	7 cut(s)	39, 81, 91, 108, 149, 182, 246
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	108
MboII	GAAGA	2 cut(s)	116, 119
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	31
MnlI	CCTC	2 cut(s)	132, 141
MseI	TTAA	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	50, 155
NmuCI	GTSAC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	249
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
PshBI	ATTAAT	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	83
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	9 cut(s)	58, 97, 104, 165, 198, 204, 210, 231, 238
Sse9I	AATT	1 cut(s)	116
SsiI	CCGC	2 cut(s)	44, 213
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	94
TasI	AATT	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	108
Tsp45I	GTSAC	1 cut(s)	108
TspDTI	ATGAA	1 cut(s)	131
TspGWI	ACGGA	1 cut(s)	123
VspI	ATTAAT	1 cut(s)	83
XapI	RAATTY	1 cut(s)	116
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.