Rh1CG134000

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0020432
Physical Location & Seq
Forward (+)
29381732 .. 29382115
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG134000.1

Sequence Viewer

Length: 384 bp
ATGGTTAGTCATTCATCCCTGCTATCCACTCTATGTCTGGTTTTTAAGTTTCATATAGATAAGAATACATTGCTGGTTTCGGGCTTGTTTATGACAGTTACACATAACAGGTTATTAAATGTTGAACTGCAAGTATATGTCTGTCTATGCAAAACAGGAAGGAGAACGATTCAGAAGCATTCAGAAGGACGATGTCATGAACTGGTACAAAAACAAATTTGCAACAGTCATCTCCCAAGTGTCGGAGACTGGCTTGCAATTCGTGTTTGGGGATGCGAAACAGACTTGAAATATGCTGAAGCACGGCCGGAGTCTGTACAAGTCATTGAAGACCTTGCAGCCTTTAAGATGCCTTTAAAATGCTCATTTGTTGAAAATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

127

Amino Acids

14.46

Weight (kDa)

8.19

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020432)

Species Orthologous Gene IDs
pyrus_communis pycom02g24540
rosa_chinensis RchiOBHm_Chr1g0333081 RchiOBHm_Chr1g0334021 RchiOBHm_Chr1g0335171
rosa_roxburghii Rroxscaffold_4G00326810
rosa_samantha Rh1CG134000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 305
AcsI RAATTY 2 cut(s) 216, 376
AcuI CTGAAG 1 cut(s) 318
AfaI GTAC 2 cut(s) 207, 318
AfiI CCNNNNNNNGG 1 cut(s) 242
AgsI TTSAA 4 cut(s) 125, 289, 329, 374
Alw26I GTCTC 1 cut(s) 240
AoxI GGCC 1 cut(s) 305
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 2 cut(s) 216, 376
BbsI GAAGAC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 350
BceAI ACGGC 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 240
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
BmsI GCATC 2 cut(s) 263, 339
BpiI GAAGAC 1 cut(s) 336
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse1I ACTGG 2 cut(s) 207, 254
Bse3DI GCAATG 1 cut(s) 68
BseGI GGATG 2 cut(s) 14, 278
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMI GCAATG 1 cut(s) 68
BseNI ACTGG 2 cut(s) 207, 254
BseX3I CGGCCG 1 cut(s) 305
BseXI GCAGC 1 cut(s) 350
Bsh1285I CGRYCG 1 cut(s) 308
BshFI GGCC 1 cut(s) 307
BsiEI CGRYCG 1 cut(s) 308
BsiSI CCGG 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 1 cut(s) 240
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 1 cut(s) 307
Bsp1407I TGTACA 1 cut(s) 316
BspANI GGCC 1 cut(s) 307
BspHI TCATGA 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 68
BsrGI TGTACA 1 cut(s) 316
BsrI ACTGG 2 cut(s) 207, 254
Bst4CI ACNGT 2 cut(s) 97, 227
BstAUI TGTACA 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 255
BstF5I GGATG 2 cut(s) 14, 278
BstMAI GTCTC 1 cut(s) 240
BstMCI CGRYCG 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 350
BstV2I GAAGAC 1 cut(s) 336
BstZI CGGCCG 1 cut(s) 305
BsuRI GGCC 1 cut(s) 307
BtsCI GGATG 2 cut(s) 14, 278
Cac8I GCNNGC 1 cut(s) 255
CciI TCATGA 1 cut(s) 196
Csp6I GTAC 2 cut(s) 206, 317
CviAII CATG 1 cut(s) 197
CviJI RGCY 4 cut(s) 84, 253, 307, 341
CviKI_1 RGCY 4 cut(s) 84, 253, 307, 341
CviQI GTAC 2 cut(s) 206, 317
DraI TTTAAA 1 cut(s) 357
EaeI YGGCCR 1 cut(s) 305
EagI CGGCCG 1 cut(s) 305
EclXI CGGCCG 1 cut(s) 305
Eco52I CGGCCG 1 cut(s) 305
Eco57I CTGAAG 1 cut(s) 318
FaeI CATG 1 cut(s) 200
FatI CATG 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 339
GluI GCNGC 1 cut(s) 339
HaeIII GGCC 1 cut(s) 307
HapII CCGG 1 cut(s) 308
Hin1II CATG 1 cut(s) 200
HinfI GANTC 2 cut(s) 169, 311
HpaII CCGG 1 cut(s) 308
Hpy188I TCNGA 3 cut(s) 174, 184, 245
Hpy188III TCNNGA 1 cut(s) 197
HpyAV CCTTC 2 cut(s) 153, 179
HpyCH4III ACNGT 2 cut(s) 97, 227
HpyCH4V TGCA 5 cut(s) 130, 150, 222, 257, 338
Hsp92II CATG 1 cut(s) 200
LpnPI CCDG 8 cut(s) 23, 32, 59, 94, 141, 188, 235, 321
Lsp1109I GCAGC 1 cut(s) 350
LweI GCATC 2 cut(s) 263, 339
MaeIII GTNAC 1 cut(s) 97
MboII GAAGA 1 cut(s) 341
MluCI AATT 3 cut(s) 216, 258, 376
MlyI GAGTC 1 cut(s) 320
MmeI TCCRAC 1 cut(s) 223
MseI TTAA 4 cut(s) 45, 116, 345, 356
MspI CCGG 1 cut(s) 308
Mva1269I GAATGC 1 cut(s) 178
NlaIII CATG 1 cut(s) 200
PagI TCATGA 1 cut(s) 196
PctI GAATGC 1 cut(s) 178
PfeI GAWTC 1 cut(s) 169
PflFI GACNNNGTC 1 cut(s) 192
PkrI GCNGC 1 cut(s) 340
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PsyI GACNNNGTC 1 cut(s) 192
RsaI GTAC 2 cut(s) 207, 318
RsaNI GTAC 2 cut(s) 206, 317
SaqAI TTAA 4 cut(s) 45, 116, 345, 356
SatI GCNGC 1 cut(s) 339
SchI GAGTC 1 cut(s) 320
SetI ASST 2 cut(s) 113, 336
SfaNI GCATC 2 cut(s) 263, 339
Sse9I AATT 3 cut(s) 216, 258, 376
TaaI ACNGT 2 cut(s) 97, 227
TasI AATT 3 cut(s) 216, 258, 376
TatI WGTACW 1 cut(s) 316
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 4 cut(s) 45, 116, 345, 356
Tru9I TTAA 4 cut(s) 45, 116, 345, 356
TseI GCWGC 1 cut(s) 338
TspDTI ATGAA 2 cut(s) 41, 213
Tth111I GACNNNGTC 1 cut(s) 192
XapI RAATTY 2 cut(s) 216, 376
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.