RchiOBHm_Chr1g0334021

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0020432
Physical Location & Seq
Reverse (-)
26116156 .. 26116830
675 bp
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UTR
Exon/CDS
Intron
PRQ56278

Sequence Viewer

Length: 264 bp
ATGAGATTGCCTATCAGTTTTAATGGCTGGGGCTTAATGCTTTTTTGCATCCAAGTTTGTGCACTAGAGGAAGCTAGTGTTGCCAAGCTGGAAACTTTGGTATCTGTATCGACTGACAAGCTGGAGCTAAAGGTCTACGGTTTCAATGACAAGCTTCCAGCTCTGTTGTCAAAGATTCTGAAAACAACCAAAAGTTTCATGCCAATTTCTGATTGTTTCATGATATGCTTAGTTATTCATCCCTGCTATCCACTCTATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

87

Amino Acids

9.79

Weight (kDa)

7.6

Isoelectric Point (pI)

17.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M16_M PF16187 24 - 75 1.9e-10 Middle or third domain of peptidase_M16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020432)

Species Orthologous Gene IDs
pyrus_communis pycom02g24540
rosa_chinensis RchiOBHm_Chr1g0333081 RchiOBHm_Chr1g0334021 RchiOBHm_Chr1g0335171
rosa_roxburghii Rroxscaffold_4G00326810
rosa_samantha Rh1CG134000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 135
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 6 cut(s) 74, 88, 121, 127, 154, 161
AluI AGCT 6 cut(s) 74, 88, 121, 127, 154, 161
Alw21I GWGCWC 1 cut(s) 64
Alw44I GTGCAC 1 cut(s) 60
ApaLI GTGCAC 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 64
BaeI ACNNNNGTAYC 2 cut(s) 84, 117
Bbv12I GWGCWC 1 cut(s) 64
BfaI CTAG 2 cut(s) 65, 75
BmsI GCATC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 143
BseGI GGATG 2 cut(s) 48, 238
BseSI GKGCMC 1 cut(s) 64
BseYI CCCAGC 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 64
BspHI TCATGA 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 229
BstF5I GGATG 2 cut(s) 48, 238
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstSLI GKGCMC 1 cut(s) 64
BtsCI GGATG 2 cut(s) 48, 238
CciI TCATGA 1 cut(s) 219
CviAII CATG 2 cut(s) 199, 220
CviJI RGCY 8 cut(s) 27, 33, 74, 88, 121, 127, 154, 161
CviKI_1 RGCY 8 cut(s) 27, 33, 74, 88, 121, 127, 154, 161
DdeI CTNAG 1 cut(s) 229
FaeI CATG 2 cut(s) 202, 223
FaiI YATR 4 cut(s) 200, 221, 226, 258
FatI CATG 2 cut(s) 198, 219
FblI GTMKAC 1 cut(s) 135
FokI GGATG 2 cut(s) 35, 225
FspBI CTAG 2 cut(s) 65, 75
GsaI CCCAGC 1 cut(s) 31
GsuI CTGGAG 1 cut(s) 143
Hin1II CATG 2 cut(s) 202, 223
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 1 cut(s) 175
Hpy166II GTNNAC 2 cut(s) 62, 136
Hpy188I TCNGA 3 cut(s) 180, 211, 263
Hpy188III TCNNGA 1 cut(s) 220
Hpy8I GTNNAC 2 cut(s) 62, 136
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4V TGCA 2 cut(s) 48, 62
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 229
Hsp92II CATG 2 cut(s) 202, 223
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 5 cut(s) 13, 74, 107, 171, 256
LweI GCATC 1 cut(s) 57
MaeI CTAG 2 cut(s) 65, 75
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 1 cut(s) 204
MnlI CCTC 1 cut(s) 61
MseI TTAA 2 cut(s) 21, 35
MwoI GCNNNNNNNGC 1 cut(s) 80
NlaIII CATG 2 cut(s) 202, 223
PagI TCATGA 1 cut(s) 219
PfeI GAWTC 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 27
SaqAI TTAA 2 cut(s) 21, 35
SduI GDGCHC 1 cut(s) 64
SetI ASST 7 cut(s) 76, 90, 123, 129, 135, 156, 163
SfaNI GCATC 1 cut(s) 57
Sse9I AATT 1 cut(s) 204
SspMI CTAG 2 cut(s) 65, 75
TaaI ACNGT 1 cut(s) 140
TaqI TCGA 1 cut(s) 110
TasI AATT 1 cut(s) 204
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 2 cut(s) 21, 35
Tru9I TTAA 2 cut(s) 21, 35
TspDTI ATGAA 3 cut(s) 187, 208, 227
VneI GTGCAC 1 cut(s) 60
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 2 cut(s) 65, 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.