RchiOBHm_Chr1g0352281

Xyloglucan endotransglucosylase hydrolase protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0014798
Physical Location & Seq
Reverse (-)
45511327 .. 45513323
1997 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 642 bp
ATGGCAGACCCAGGACTCCACCCAGAGACTCCCATTCACCACAAAACCCAACCCCTCAAGCAAATCGCCATAGACTACACCCCAGATGCCTGCACACACTGTGCCGACTCCAACACCATCACTGTCACCTTCGACCACCGCGGCGGCGCAAGGTGGCGCACCCCCACCCGGTTCCTCTACGGCACCTTCAGCTCCCTCATCCAGTGCGCACGTGGCAACACGAGCGGCCTCAACTTCAACCTCTACCTCTCCTCCCTAGAAGGTGACAAGTCCCAGGACGAGATCGACTTCGAGTTTCTAGGTAAGGACATGACCATTGTCCAGACCAACTACTACACTGAAGGCACTGGAAACAAAGAAGAGATCCATGACCTAGGTTTCAACTGTTCCGAAGGGTTTCATGAGTATGTGATCAAGTGGAGTAGGGATCTGATCGAGTGGTTCATAGATGGGAAAATGGTGAGGAGGGTTGAGAGAAAAGAGGGTGAGGGTTTTCCGAATAAGCCTATGTATTTGTATTCTTCAGTGTGGGATGCTAGCTATATTGACGAGGGGAGGTGGACTGGGAAGTACGTTGGGTGCGATGTGCCTTATGTTTGTGTGTATAAGGATATTCATGTCCCTGCTGAGAGTGCTCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0009888 GO:0010087 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0032502 GO:0046527 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_16

Protein Analysis

213

Amino Acids

24.39

Weight (kDa)

5.34

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 29 - 183 1.8e-41 Glycosyl hydrolases family 16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 208
AccB1I GGYRCC 1 cut(s) 182
AccBSI CCGCTC 1 cut(s) 225
AccII CGCG 1 cut(s) 141
AciI CCGC 4 cut(s) 139, 141, 144, 225
AclWI GGATC 2 cut(s) 358, 435
AcuI CTGAAG 3 cut(s) 172, 360, 507
AcvI CACGTG 1 cut(s) 212
AdeI CACNNNGTG 1 cut(s) 101
AfaI GTAC 1 cut(s) 572
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 2 cut(s) 238, 382
AjnI CCWGG 2 cut(s) 10, 273
AluBI AGCT 2 cut(s) 192, 540
AluI AGCT 2 cut(s) 192, 540
Alw21I GWGCWC 1 cut(s) 637
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 2 cut(s) 358, 435
AoxI GGCC 1 cut(s) 226
Asp700I GAANNNNTTC 1 cut(s) 396
AspA2I CCTAGG 1 cut(s) 373
AspLEI GCGC 3 cut(s) 149, 159, 209
AsuC2I CCSGG 1 cut(s) 169
AsuHPI GGTGA 5 cut(s) 29, 118, 275, 472, 497
AsuNHI GCTAGC 1 cut(s) 536
AvrII CCTAGG 1 cut(s) 373
BanI GGYRCC 1 cut(s) 182
BauI CACGAG 1 cut(s) 220
BbrPI CACGTG 1 cut(s) 212
Bbv12I GWGCWC 1 cut(s) 637
BccI CCATC 2 cut(s) 125, 443
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 2 cut(s) 12, 275
BclI TGATCA 1 cut(s) 411
BcnI CCSGG 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 4 cut(s) 257, 299, 374, 537
BisI GCNGC 3 cut(s) 142, 145, 226
BlnI CCTAGG 1 cut(s) 373
BlsI GCNGC 3 cut(s) 143, 146, 227
Bme1390I CCNGG 3 cut(s) 12, 169, 275
BmiI GGNNCC 2 cut(s) 173, 184
BmrFI CCNGG 3 cut(s) 12, 169, 275
BmrI ACTGGG 1 cut(s) 573
BmsI GCATC 2 cut(s) 76, 523
BmtI GCTAGC 1 cut(s) 540
BmuI ACTGGG 1 cut(s) 573
BoxI GACNNNNGTC 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 169
BsaAI YACGTR 1 cut(s) 212
BsaJI CCNNGG 4 cut(s) 10, 139, 273, 373
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse1I ACTGG 3 cut(s) 202, 352, 568
BseBI CCWGG 2 cut(s) 12, 275
BseDI CCNNGG 4 cut(s) 10, 139, 273, 373
BseGI GGATG 2 cut(s) 198, 538
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 618
BseNI ACTGG 3 cut(s) 202, 352, 568
BseRI GAGGAG 2 cut(s) 241, 478
BsgI GTGCAG 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 1 cut(s) 228
BshNI GGYRCC 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 637
BsiSI CCGG 1 cut(s) 169
BslFI GGGAC 2 cut(s) 256, 605
BslI CCNNNNNNNGG 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 20
BsmFI GGGAC 2 cut(s) 256, 605
BsnI GGCC 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 637
Bsp143I GATC 5 cut(s) 282, 363, 411, 427, 432
BspACI CCGC 4 cut(s) 139, 141, 144, 225
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 619
BspFNI CGCG 1 cut(s) 141
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 2 cut(s) 173, 184
BspOI GCTAGC 1 cut(s) 540
BspPI GGATC 2 cut(s) 358, 435
BspT107I GGYRCC 1 cut(s) 182
BsrBI CCGCTC 1 cut(s) 225
BsrI ACTGG 3 cut(s) 202, 352, 568
BssECI CCNNGG 4 cut(s) 10, 139, 273, 373
BssMI GATC 5 cut(s) 282, 363, 411, 427, 432
BssSI CACGAG 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 373
Bst2BI CACGAG 1 cut(s) 220
Bst2UI CCWGG 2 cut(s) 12, 275
Bst4CI ACNGT 3 cut(s) 101, 124, 386
Bst6I CTCTTC 1 cut(s) 354
BstBAI YACGTR 1 cut(s) 212
BstC8I GCNNGC 3 cut(s) 91, 538, 637
BstDEI CTNAG 1 cut(s) 627
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 2 cut(s) 198, 538
BstFNI CGCG 1 cut(s) 141
BstHHI GCGC 3 cut(s) 149, 159, 209
BstKTI GATC 5 cut(s) 285, 366, 414, 430, 435
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 5 cut(s) 282, 363, 411, 427, 432
BstMWI GCNNNNNNNGC 4 cut(s) 189, 213, 222, 632
BstNI CCWGG 2 cut(s) 12, 275
BstPAI GACNNNNGTC 1 cut(s) 317
BstSCI CCNGG 3 cut(s) 10, 167, 273
BstUI CGCG 1 cut(s) 141
BstX2I RGATCY 2 cut(s) 363, 427
BstYI RGATCY 2 cut(s) 363, 427
BsuRI GGCC 1 cut(s) 228
BtgI CCRYGG 1 cut(s) 139
BtgZI GCGATG 1 cut(s) 597
BtsCI GGATG 2 cut(s) 198, 538
BtsIMutI CAGTG 6 cut(s) 97, 120, 209, 336, 345, 531
Cac8I GCNNGC 3 cut(s) 91, 538, 637
CciI TCATGA 1 cut(s) 400
CfoI GCGC 3 cut(s) 149, 159, 209
Cfr42I CCGCGG 1 cut(s) 142
Csp6I GTAC 1 cut(s) 571
CviAII CATG 4 cut(s) 310, 368, 401, 617
CviJI RGCY 4 cut(s) 192, 228, 505, 540
CviKI_1 RGCY 4 cut(s) 192, 228, 505, 540
CviQI GTAC 1 cut(s) 571
DdeI CTNAG 1 cut(s) 627
DpnI GATC 5 cut(s) 284, 365, 413, 429, 434
DpnII GATC 5 cut(s) 282, 363, 411, 427, 432
DraIII CACNNNGTG 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 373
Eco57I CTGAAG 3 cut(s) 172, 360, 507
Eco72I CACGTG 1 cut(s) 212
EcoRII CCWGG 2 cut(s) 10, 273
EcoT14I CCWWGG 1 cut(s) 373
ErhI CCWWGG 1 cut(s) 373
FaeI CATG 4 cut(s) 313, 371, 404, 620
FaqI GGGAC 2 cut(s) 256, 605
FatI CATG 4 cut(s) 309, 367, 400, 616
FbaI TGATCA 1 cut(s) 411
Fnu4HI GCNGC 3 cut(s) 142, 145, 226
FokI GGATG 2 cut(s) 185, 545
Fsp4HI GCNGC 3 cut(s) 142, 145, 226
FspAI RTGCGCAY 1 cut(s) 208
FspBI CTAG 4 cut(s) 257, 299, 374, 537
FspI TGCGCA 1 cut(s) 208
GlaI GCGC 3 cut(s) 148, 158, 208
GluI GCNGC 3 cut(s) 142, 145, 226
HaeIII GGCC 1 cut(s) 228
HapII CCGG 1 cut(s) 169
HhaI GCGC 3 cut(s) 149, 159, 209
Hin1II CATG 4 cut(s) 313, 371, 404, 620
Hin6I GCGC 3 cut(s) 147, 157, 207
HinP1I GCGC 3 cut(s) 147, 157, 207
HinfI GANTC 3 cut(s) 15, 28, 107
HpaII CCGG 1 cut(s) 169
HphI GGTGA 5 cut(s) 29, 118, 275, 472, 497
Hpy166II GTNNAC 1 cut(s) 561
Hpy188I TCNGA 3 cut(s) 391, 432, 498
Hpy188III TCNNGA 2 cut(s) 322, 401
Hpy8I GTNNAC 1 cut(s) 561
HpyAV CCTTC 5 cut(s) 139, 196, 254, 335, 386
HpyCH4III ACNGT 3 cut(s) 101, 124, 386
HpyCH4IV ACGT 2 cut(s) 211, 573
HpyCH4V TGCA 1 cut(s) 93
HpyF10VI GCNNNNNNNGC 4 cut(s) 189, 213, 222, 632
HpyF3I CTNAG 1 cut(s) 627
HpySE526I ACGT 2 cut(s) 211, 573
Hsp92II CATG 4 cut(s) 313, 371, 404, 620
HspAI GCGC 3 cut(s) 147, 157, 207
Ksp22I TGATCA 1 cut(s) 411
KspI CCGCGG 1 cut(s) 142
Kzo9I GATC 5 cut(s) 282, 363, 411, 427, 432
LmnI GCTCC 1 cut(s) 197
LweI GCATC 2 cut(s) 76, 523
MaeI CTAG 4 cut(s) 257, 299, 374, 537
MaeII ACGT 2 cut(s) 211, 573
MaeIII GTNAC 2 cut(s) 124, 263
MalI GATC 5 cut(s) 284, 365, 413, 429, 434
MbiI CCGCTC 1 cut(s) 225
MboI GATC 5 cut(s) 282, 363, 411, 427, 432
MboII GAAGA 2 cut(s) 371, 513
MflI RGATCY 2 cut(s) 363, 427
MhlI GDGCHC 1 cut(s) 637
MlyI GAGTC 3 cut(s) 9, 22, 101
MmeI TCCRAC 1 cut(s) 135
MroXI GAANNNNTTC 1 cut(s) 396
MslI CAYNNNNRTG 1 cut(s) 405
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 3 cut(s) 12, 169, 275
MvaI CCWGG 2 cut(s) 12, 275
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 4 cut(s) 189, 213, 222, 632
NciI CCSGG 1 cut(s) 169
NdeII GATC 5 cut(s) 282, 363, 411, 427, 432
NheI GCTAGC 1 cut(s) 536
NlaIII CATG 4 cut(s) 313, 371, 404, 620
NlaIV GGNNCC 2 cut(s) 173, 184
NmuCI GTSAC 2 cut(s) 124, 263
NsbI TGCGCA 1 cut(s) 208
PagI TCATGA 1 cut(s) 400
PcsI WCGNNNNNNNCGW 1 cut(s) 579
PdmI GAANNNNTTC 1 cut(s) 396
PkrI GCNGC 3 cut(s) 143, 146, 227
PleI GAGTC 3 cut(s) 9, 22, 101
PmaCI CACGTG 1 cut(s) 212
PmlI CACGTG 1 cut(s) 212
PpsI GAGTC 3 cut(s) 9, 22, 101
Ppu21I YACGTR 1 cut(s) 212
PshAI GACNNNNGTC 1 cut(s) 317
Psp6I CCWGG 2 cut(s) 10, 273
PspCI CACGTG 1 cut(s) 212
PspGI CCWGG 2 cut(s) 10, 273
PspN4I GGNNCC 2 cut(s) 173, 184
PsuI RGATCY 2 cut(s) 363, 427
RsaI GTAC 1 cut(s) 572
RsaNI GTAC 1 cut(s) 571
RseI CAYNNNNRTG 1 cut(s) 405
SacII CCGCGG 1 cut(s) 142
SatI GCNGC 3 cut(s) 142, 145, 226
Sau3AI GATC 5 cut(s) 282, 363, 411, 427, 432
SchI GAGTC 3 cut(s) 9, 22, 101
ScrFI CCNGG 3 cut(s) 12, 169, 275
SduI GDGCHC 1 cut(s) 637
SfaNI GCATC 2 cut(s) 76, 523
Sfr303I CCGCGG 1 cut(s) 142
SgrBI CCGCGG 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
SsiI CCGC 4 cut(s) 139, 141, 144, 225
SspMI CTAG 4 cut(s) 257, 299, 374, 537
StyD4I CCNGG 3 cut(s) 10, 167, 273
StyI CCWWGG 1 cut(s) 373
TaaI ACNGT 3 cut(s) 101, 124, 386
TaiI ACGT 2 cut(s) 214, 576
TaqI TCGA 4 cut(s) 132, 285, 291, 435
TauI GCSGC 3 cut(s) 144, 147, 228
TscAI CASTG 6 cut(s) 104, 127, 209, 343, 352, 531
TseFI GTSAC 2 cut(s) 124, 263
Tsp45I GTSAC 2 cut(s) 124, 263
TspDTI ATGAA 3 cut(s) 389, 433, 605
TspRI CASTG 6 cut(s) 104, 127, 209, 343, 352, 531
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XmaJI CCTAGG 1 cut(s) 373
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 4 cut(s) 257, 299, 374, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.