RchiOBHm_Chr1g0358781

Arabinogalactan peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016507
Physical Location & Seq
Reverse (-)
50805983 .. 50806841
859 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
ATGGCAGCTTGCTTTGCTTTTTCCAAGGCCATTTTCCGACTTCTGGCAGTGCTGGCACTCCTCTTCTTGGCTTCTGCCTCTGCCTCAAGGGCTCCTGCTGCTTCCCCGCTAGCTGCTCCTGCTCCTGCTCCTGTTCTCACCGGTGATGGGACTTCAATAGATCAGGGGATTGCGTATGTGCTGATGCTGGTGGCTTTGGTGCTCACATATCTCATTCATCCTTTGGATGCATCATCCTACAACTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AGP

Protein Analysis

83

Amino Acids

8.56

Weight (kDa)

6.5

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AGP PF06376 39 - 73 2.7e-17 Arabinogalactan peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53250
fragaria_vesca FvH4_7g15910 FvH4_7g15910
malus_domestica MD01G1076000.v1.1 MD07G1144900.v1.1
prunus_persica Prupe.2G183500_v2.0.a1
pyrus_communis pycom01g10490
rosa_chinensis RchiOBHm_Chr1g0358781
rosa_multiflora Rmu_sc0017529.1_g000002 Rmu_sc0031713.1_g000001
rosa_rugosa Rorug01G0265200
rosa_samantha Rh1CG263200 Rh1DG274200
rosa_wichuraiana Rw1G024820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 107
AfiI CCNNNNNNNGG 3 cut(s) 43, 67, 147
AgeI ACCGGT 1 cut(s) 140
AgsI TTSAA 1 cut(s) 156
AjuI GAANNNNNNNTTGG 2 cut(s) 17, 49
AluBI AGCT 2 cut(s) 8, 113
AluI AGCT 2 cut(s) 8, 113
Alw21I GWGCWC 1 cut(s) 204
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 3 cut(s) 5, 98, 113
AsiGI ACCGGT 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 130, 155
AsuNHI GCTAGC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 3 cut(s) 17, 85, 100
BccI CCATC 1 cut(s) 140
BfaI CTAG 1 cut(s) 110
BglI GCCNNNNNGGC 1 cut(s) 89
BisI GCNGC 3 cut(s) 6, 99, 114
BlsI GCNGC 3 cut(s) 7, 100, 115
BmiI GGNNCC 1 cut(s) 93
BmsI GCATC 3 cut(s) 174, 217, 239
BmtI GCTAGC 1 cut(s) 113
BpuEI CTTGAG 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 24
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 67, 147
Bse118I RCCGGY 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 3 cut(s) 217, 232, 233
BseLI CCNNNNNNNGG 3 cut(s) 43, 67, 147
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 3 cut(s) 17, 85, 100
BshFI GGCC 1 cut(s) 29
BshTI ACCGGT 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 204
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 3 cut(s) 43, 67, 147
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 1 cut(s) 29
Bsp1286I GDGCHC 2 cut(s) 94, 204
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 1 cut(s) 107
BspANI GGCC 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 93
BspOI GCTAGC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 24
Bst6I CTCTTC 1 cut(s) 68
BstC8I GCNNGC 3 cut(s) 10, 54, 111
BstF5I GGATG 3 cut(s) 217, 232, 233
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 5 cut(s) 14, 53, 89, 98, 119
BstV1I GCAGC 3 cut(s) 17, 85, 100
BsuRI GGCC 1 cut(s) 29
BtsCI GGATG 3 cut(s) 217, 232, 233
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
Cac8I GCNNGC 3 cut(s) 10, 54, 111
Cfr10I RCCGGY 1 cut(s) 140
CspAI ACCGGT 1 cut(s) 140
CviJI RGCY 6 cut(s) 8, 29, 71, 92, 113, 194
CviKI_1 RGCY 6 cut(s) 8, 29, 71, 92, 113, 194
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 24
Eco24I GRGCYC 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 24
FaiI YATR 2 cut(s) 177, 208
FaqI GGGAC 1 cut(s) 163
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 3 cut(s) 6, 99, 114
FokI GGATG 3 cut(s) 204, 220, 239
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 3 cut(s) 6, 99, 114
FspBI CTAG 1 cut(s) 110
GluI GCNGC 3 cut(s) 6, 99, 114
HaeIII GGCC 1 cut(s) 29
HapII CCGG 1 cut(s) 141
HpaII CCGG 1 cut(s) 141
HphI GGTGA 2 cut(s) 130, 155
Hpy188I TCNGA 1 cut(s) 38
HpyCH4V TGCA 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 53, 89, 98, 119
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 4 cut(s) 97, 121, 127, 133
LpnPI CCDG 9 cut(s) 29, 38, 108, 132, 138, 144, 149, 154, 173
Lsp1109I GCAGC 3 cut(s) 17, 85, 100
LweI GCATC 3 cut(s) 174, 217, 239
MaeI CTAG 1 cut(s) 110
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 1 cut(s) 55
MhlI GDGCHC 2 cut(s) 94, 204
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 3 cut(s) 71, 88, 94
Mph1103I ATGCAT 1 cut(s) 232
MspI CCGG 1 cut(s) 141
MwoI GCNNNNNNNGC 5 cut(s) 14, 53, 89, 98, 119
NdeII GATC 1 cut(s) 160
NheI GCTAGC 1 cut(s) 109
NlaIV GGNNCC 1 cut(s) 93
NsiI ATGCAT 1 cut(s) 232
PinAI ACCGGT 1 cut(s) 140
PkrI GCNGC 3 cut(s) 7, 100, 115
PspN4I GGNNCC 1 cut(s) 93
SatI GCNGC 3 cut(s) 6, 99, 114
Sau3AI GATC 1 cut(s) 160
SduI GDGCHC 2 cut(s) 94, 204
SetI ASST 2 cut(s) 10, 115
SfaNI GCATC 3 cut(s) 174, 217, 239
SgrAI CRCCGGYG 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
SsiI CCGC 1 cut(s) 107
SspMI CTAG 1 cut(s) 110
StyI CCWWGG 1 cut(s) 24
TscAI CASTG 1 cut(s) 54
TseI GCWGC 3 cut(s) 5, 98, 113
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 1 cut(s) 54
XspI CTAG 1 cut(s) 110
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.