RchiOBHm_Chr1g0372041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0019791
Physical Location & Seq
Forward (+)
60936647 .. 60937021
375 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
ATGATGATGGCTAGGAGGATGGAGTACTGCCTCATGAGTATTGTTGTGCTACTGGTGCTGGTTCTTCTGTCTTCTTCTACGGCGTTTCCGAGCGCAGCAACATCTACCGGAGATGGCTTTACTGGAACAACGATGTCGTCTCAAAAGGGTATAGAAGATACGGATCATGAAGAAGCTGCTGCTAATTATGGTGGAGATGACGATTATTATCGACAGTATGGTGATGTTCCAAGCCCTGGAGTTGGTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

8.88

Weight (kDa)

4.3

Isoelectric Point (pI)

57.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019791)

Species Orthologous Gene IDs
prunus_persica Prupe.2G263000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372041
rosa_laevigata RLG00000026925
rosa_roxburghii Rroxscaffold_4G00285300
rosa_rugosa Rorug01G0369100
rosa_samantha Rh1CG354500 Rh1DG372300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 236
AclWI GGATC 1 cut(s) 171
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 2 cut(s) 236, 242
AjnI CCWGG 1 cut(s) 235
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 1 cut(s) 171
ApeKI GCWGC 3 cut(s) 95, 176, 179
AspLEI GCGC 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 3 cut(s) 107, 163, 166
BccI CCATC 2 cut(s) 13, 107
BceAI ACGGC 1 cut(s) 96
BciT130I CCWGG 1 cut(s) 237
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 1 cut(s) 12
BisI GCNGC 3 cut(s) 96, 177, 180
BlsI GCNGC 3 cut(s) 97, 178, 181
BmcAI AGTACT 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 63
BsaBI GATNNNNATC 2 cut(s) 162, 207
BsaJI CCNNGG 1 cut(s) 235
BsaWI WCCGGW 1 cut(s) 107
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 242
Bse1I ACTGG 2 cut(s) 57, 127
Bse8I GATNNNNATC 2 cut(s) 162, 207
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 1 cut(s) 24
BseJI GATNNNNATC 2 cut(s) 162, 207
BseLI CCNNNNNNNGG 2 cut(s) 236, 242
BseNI ACTGG 2 cut(s) 57, 127
BseXI GCAGC 3 cut(s) 107, 163, 166
BsiSI CCGG 1 cut(s) 108
BslI CCNNNNNNNGG 2 cut(s) 236, 242
BsmAI GTCTC 1 cut(s) 144
BsmBI CGTCTC 1 cut(s) 144
Bsp143I GATC 1 cut(s) 163
BspHI TCATGA 2 cut(s) 33, 166
BspPI GGATC 1 cut(s) 171
BsrI ACTGG 2 cut(s) 57, 127
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 216
BstF5I GGATG 1 cut(s) 24
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 55
BstNI CCWGG 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 235
BstV1I GCAGC 3 cut(s) 107, 163, 166
BstV2I GAAGAC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 247
CciI TCATGA 2 cut(s) 33, 166
CfoI GCGC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 25
CviAII CATG 2 cut(s) 34, 167
CviJI RGCY 4 cut(s) 11, 117, 176, 234
CviKI_1 RGCY 4 cut(s) 11, 117, 176, 234
CviQI GTAC 1 cut(s) 25
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 235
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 2 cut(s) 37, 170
FaiI YATR 5 cut(s) 35, 152, 168, 189, 219
FatI CATG 2 cut(s) 33, 166
Fnu4HI GCNGC 3 cut(s) 96, 177, 180
FokI GGATG 1 cut(s) 31
Fsp4HI GCNGC 3 cut(s) 96, 177, 180
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 94
GluI GCNGC 3 cut(s) 96, 177, 180
HapII CCGG 1 cut(s) 108
HhaI GCGC 1 cut(s) 95
Hin1II CATG 2 cut(s) 37, 170
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HpaII CCGG 1 cut(s) 108
HphI GGTGA 1 cut(s) 233
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 2 cut(s) 34, 167
HpyCH4III ACNGT 1 cut(s) 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
Hsp92II CATG 2 cut(s) 37, 170
HspAI GCGC 1 cut(s) 93
Kzo9I GATC 1 cut(s) 163
LpnPI CCDG 5 cut(s) 38, 44, 108, 121, 222
Lsp1109I GCAGC 3 cut(s) 107, 163, 166
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 245
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 5 cut(s) 56, 63, 66, 167, 182
MluCI AATT 1 cut(s) 184
MnlI CCTC 2 cut(s) 9, 41
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 55
NdeII GATC 1 cut(s) 163
NlaIII CATG 2 cut(s) 37, 170
NmuCI GTSAC 1 cut(s) 245
PagI TCATGA 2 cut(s) 33, 166
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PflMI CCANNNNNTGG 1 cut(s) 236
PkrI GCNGC 3 cut(s) 97, 178, 181
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SatI GCNGC 3 cut(s) 96, 177, 180
Sau3AI GATC 1 cut(s) 163
ScaI AGTACT 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 237
SetI ASST 1 cut(s) 178
Sse9I AATT 1 cut(s) 184
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 235
TaaI ACNGT 1 cut(s) 216
TaqI TCGA 1 cut(s) 211
TasI AATT 1 cut(s) 184
TatI WGTACW 1 cut(s) 24
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 3 cut(s) 95, 176, 179
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 183
TspGWI ACGGA 1 cut(s) 176
Van91I CCANNNNNTGG 1 cut(s) 236
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.