Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD08G1120800.v1.1 |
| rosa_chinensis | RchiOBHm_Chr0c36g0502901 RchiOBHm_Chr2g0153841 |
| rosa_laevigata | RLG00000020733 |
| rosa_multiflora | Rmu_co8043988.1_g000001 Rmu_sc0003887.1_g000016 |
| rosa_roxburghii | Rroxscaffold_6G00422800 |
| rosa_samantha | Rh2BG516000 Rh2DG528300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcvI | CACGTG | 1 cut(s) | 137 |
| AgsI | TTSAA | 1 cut(s) | 55 |
| AjnI | CCWGG | 2 cut(s) | 176, 187 |
| Alw21I | GWGCWC | 1 cut(s) | 136 |
| Alw44I | GTGCAC | 1 cut(s) | 132 |
| ApaLI | GTGCAC | 1 cut(s) | 132 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 38 |
| BaeGI | GKGCMC | 1 cut(s) | 136 |
| BbrPI | CACGTG | 1 cut(s) | 137 |
| Bbv12I | GWGCWC | 1 cut(s) | 136 |
| BciT130I | CCWGG | 2 cut(s) | 178, 189 |
| BfaI | CTAG | 1 cut(s) | 65 |
| Bme1390I | CCNGG | 2 cut(s) | 178, 189 |
| BmrFI | CCNGG | 2 cut(s) | 178, 189 |
| BoxI | GACNNNNGTC | 1 cut(s) | 67 |
| BsaAI | YACGTR | 1 cut(s) | 137 |
| BsaJI | CCNNGG | 1 cut(s) | 188 |
| Bse1I | ACTGG | 1 cut(s) | 87 |
| BseBI | CCWGG | 2 cut(s) | 178, 189 |
| BseDI | CCNNGG | 1 cut(s) | 188 |
| BseNI | ACTGG | 1 cut(s) | 87 |
| BseSI | GKGCMC | 1 cut(s) | 136 |
| BsiHKAI | GWGCWC | 1 cut(s) | 136 |
| BslFI | GGGAC | 1 cut(s) | 75 |
| BsmFI | GGGAC | 1 cut(s) | 75 |
| Bsp1286I | GDGCHC | 1 cut(s) | 136 |
| BsrI | ACTGG | 1 cut(s) | 87 |
| BssECI | CCNNGG | 1 cut(s) | 188 |
| Bst2UI | CCWGG | 2 cut(s) | 178, 189 |
| BstBAI | YACGTR | 1 cut(s) | 137 |
| BstNI | CCWGG | 2 cut(s) | 178, 189 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 2 cut(s) | 176, 187 |
| BstSLI | GKGCMC | 1 cut(s) | 136 |
| BtsIMutI | CAGTG | 1 cut(s) | 94 |
| Eco72I | CACGTG | 1 cut(s) | 137 |
| EcoRII | CCWGG | 2 cut(s) | 176, 187 |
| FaiI | YATR | 4 cut(s) | 44, 98, 104, 108 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 30 |
| FaqI | GGGAC | 1 cut(s) | 75 |
| FspBI | CTAG | 1 cut(s) | 65 |
| HincII | GTYRAC | 1 cut(s) | 84 |
| HindII | GTYRAC | 1 cut(s) | 84 |
| Hpy166II | GTNNAC | 2 cut(s) | 84, 134 |
| Hpy188I | TCNGA | 2 cut(s) | 73, 160 |
| Hpy8I | GTNNAC | 2 cut(s) | 84, 134 |
| HpyCH4IV | ACGT | 2 cut(s) | 136, 194 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 134 |
| HpySE526I | ACGT | 2 cut(s) | 136, 194 |
| LpnPI | CCDG | 4 cut(s) | 100, 163, 174, 190 |
| MaeI | CTAG | 1 cut(s) | 65 |
| MaeII | ACGT | 2 cut(s) | 136, 194 |
| MaeIII | GTNAC | 1 cut(s) | 89 |
| MhlI | GDGCHC | 1 cut(s) | 136 |
| MluCI | AATT | 1 cut(s) | 122 |
| MmeI | TCCRAC | 1 cut(s) | 138 |
| MroXI | GAANNNNTTC | 1 cut(s) | 38 |
| MspR9I | CCNGG | 2 cut(s) | 178, 189 |
| MvaI | CCWGG | 2 cut(s) | 178, 189 |
| NmuCI | GTSAC | 1 cut(s) | 89 |
| PdmI | GAANNNNTTC | 1 cut(s) | 38 |
| PfoI | TCCNGGA | 1 cut(s) | 176 |
| PmaCI | CACGTG | 1 cut(s) | 137 |
| PmlI | CACGTG | 1 cut(s) | 137 |
| Ppu21I | YACGTR | 1 cut(s) | 137 |
| PshAI | GACNNNNGTC | 1 cut(s) | 67 |
| Psp6I | CCWGG | 2 cut(s) | 176, 187 |
| PspCI | CACGTG | 1 cut(s) | 137 |
| PspGI | CCWGG | 2 cut(s) | 176, 187 |
| ScrFI | CCNGG | 2 cut(s) | 178, 189 |
| SduI | GDGCHC | 1 cut(s) | 136 |
| SetI | ASST | 3 cut(s) | 96, 139, 197 |
| SgeI | CNNG | 7 cut(s) | 27, 77, 99, 147, 149, 189, 190 |
| Sse9I | AATT | 1 cut(s) | 122 |
| SspMI | CTAG | 1 cut(s) | 65 |
| StyD4I | CCNGG | 2 cut(s) | 176, 187 |
| TaiI | ACGT | 2 cut(s) | 139, 197 |
| TasI | AATT | 1 cut(s) | 122 |
| TscAI | CASTG | 1 cut(s) | 94 |
| TseFI | GTSAC | 1 cut(s) | 89 |
| Tsp45I | GTSAC | 1 cut(s) | 89 |
| TspDTI | ATGAA | 1 cut(s) | 31 |
| TspRI | CASTG | 1 cut(s) | 94 |
| VneI | GTGCAC | 1 cut(s) | 132 |
| XmnI | GAANNNNTTC | 1 cut(s) | 38 |
| XspI | CTAG | 1 cut(s) | 65 |