Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0019331

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCAAATAGTTCTTAGATCAATGGAATTTGTGGTTACGCCGATTGCATTAGTGGTTTCCAATTTTGAGGAAAATGTGAAGACAAAACATCCTCAGTTGCTGTATGAATCCAAGTTGTATAGGATCCTAGCTACAAGGAGGAAGTATGTAATTTTCACTGGGATACCAAATGTGCGGTGGTTTGGAGTTGAAGGAGATTATAACGTTTTGGTAATGGATTTGCTGGGTCCTAGTCTTGAAGACTTATTTAACTTCTGTAGTAGGAAACTTTCTTTGGAGACAGTTATGCTGGCAGAAGACAGTTATGCTGGCAGATCAAATGGTAGGCCGGTATACATGATTGATTTTGGTCTGGCTAAGAAATACCCAGAAAACAAGAATTTGATTGGAACAGCAAGATATGCAAGCATGAACACCCACCTTGGGATTGAGCAAAGCCGGAGGGATGATTTGGAATCTCTTGGTTACGTCCTGATGTACTTCCTTAAGGGAAGTCTTCCTTGGCAGGGACTAAAAGCGGAAACTAAGAAACAGAAATATGAAAAAATTAGTGGGAAAAAGGGGCGGGACATGTATGTTATGGTGAGCTACTTGATGGGAATTCTGGAAGTTTACTTAGTACTGAGTATGTGGTTGTCAAGTGAATTTAACACTTTTCAGAACCTGAAGAATTTTTTACTTAATGTCCCTGCATTTGATAATGTTGATAGTTTGACCATTTCTTCAACTTCTAATAAAAGTGCTGTAGAGTTGACATGGGTTGCTTTGGCTGATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008150 GO:0008152 GO:0008360 GO:0009506 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0055044 GO:0065007 GO:0065008 GO:0071704 GO:0098657 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

259

Amino Acids

29.65

Weight (kDa)

8.74

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019331)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c23g0500751 RchiOBHm_Chr4g0405341 RchiOBHm_Chr4g0409081
rosa_roxburghii	Rroxscaffold_1G00015710
rosa_rugosa	Rorug01G0078400 Rorug05G0156100
rosa_samantha	Rh1BG099800 Rh6BG285900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	201
AccI	GTMKAC	1 cut(s)	333
AciI	CCGC	3 cut(s)	175, 518, 565
AclI	AACGTT	1 cut(s)	204
AclWI	GGATC	2 cut(s)	118, 131
AcsI	RAATTY	5 cut(s)	26, 379, 600, 644, 670
AcuI	CTGAAG	1 cut(s)	686
AfaI	GTAC	2 cut(s)	479, 621
AfiI	CCNNNNNNNGG	2 cut(s)	423, 506
AflII	CTTAAG	1 cut(s)	485
AflIII	ACRYGT	1 cut(s)	570
AgsI	TTSAA	3 cut(s)	191, 239, 726
AjuI	GAANNNNNNNTTGG	4 cut(s)	257, 289, 484, 516
AluBI	AGCT	2 cut(s)	131, 588
AluI	AGCT	2 cut(s)	131, 588
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	2 cut(s)	118, 131
AlwNI	CAGNNNCTG	2 cut(s)	100, 664
AoxI	GGCC	1 cut(s)	326
ApoI	RAATTY	5 cut(s)	26, 379, 600, 644, 670
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	595
AvaII	GGWCC	1 cut(s)	227
BamHI	GGATCC	1 cut(s)	123
BbsI	GAAGAC	4 cut(s)	86, 246, 303, 488
BccI	CCATC	1 cut(s)	589
BciVI	GTATCC	1 cut(s)	156
BclI	TGATCA	1 cut(s)	772
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	2 cut(s)	128, 231
BfmI	CTRYAG	2 cut(s)	256, 744
BfrI	CTTAAG	1 cut(s)	485
BfuI	GTATCC	1 cut(s)	156
BmcAI	AGTACT	1 cut(s)	621
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	2 cut(s)	125, 228
BmrI	ACTGGG	1 cut(s)	168
BmuI	ACTGGG	1 cut(s)	168
BpiI	GAAGAC	4 cut(s)	86, 246, 303, 488
BsaJI	CCNNGG	2 cut(s)	421, 500
Bsc4I	CCNNNNNNNGG	2 cut(s)	423, 506
Bse118I	RCCGGY	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	163
BseDI	CCNNGG	2 cut(s)	421, 500
BseGI	GGATG	2 cut(s)	88, 451
BseLI	CCNNNNNNNGG	2 cut(s)	423, 506
BseMII	CTCAG	2 cut(s)	107, 614
BseNI	ACTGG	1 cut(s)	163
BseYI	CCCAGC	1 cut(s)	223
BshFI	GGCC	1 cut(s)	328
BsiSI	CCGG	2 cut(s)	329, 439
BslFI	GGGAC	3 cut(s)	522, 581, 671
BslI	CCNNNNNNNGG	2 cut(s)	423, 506
BsmAI	GTCTC	1 cut(s)	272
BsmFI	GGGAC	3 cut(s)	522, 581, 671
BsnI	GGCC	1 cut(s)	328
Bsp143I	GATC	4 cut(s)	17, 123, 314, 772
BspACI	CCGC	3 cut(s)	175, 518, 565
BspANI	GGCC	1 cut(s)	328
BspCNI	CTCAG	2 cut(s)	106, 615
BspLI	GGNNCC	2 cut(s)	125, 228
BspPI	GGATC	2 cut(s)	118, 131
BspTI	CTTAAG	1 cut(s)	485
BsrFI	RCCGGY	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	163
BssAI	RCCGGY	1 cut(s)	328
BssECI	CCNNGG	2 cut(s)	421, 500
BssMI	GATC	4 cut(s)	17, 123, 314, 772
BssNAI	GTATAC	1 cut(s)	334
BssT1I	CCWWGG	2 cut(s)	421, 500
Bst1107I	GTATAC	1 cut(s)	334
Bst4CI	ACNGT	2 cut(s)	283, 302
BstAFI	CTTAAG	1 cut(s)	485
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstC8I	GCNNGC	3 cut(s)	291, 310, 406
BstDEI	CTNAG	6 cut(s)	14, 93, 357, 525, 616, 623
BstF5I	GGATG	2 cut(s)	88, 451
BstKTI	GATC	4 cut(s)	20, 126, 317, 775
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	4 cut(s)	17, 123, 314, 772
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstNSI	RCATGY	1 cut(s)	574
BstSFI	CTRYAG	2 cut(s)	256, 744
BstV2I	GAAGAC	4 cut(s)	86, 246, 303, 488
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BstZ17I	GTATAC	1 cut(s)	334
BsuI	GTATCC	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	328
BtsCI	GGATG	2 cut(s)	88, 451
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	3 cut(s)	291, 310, 406
CaiI	CAGNNNCTG	2 cut(s)	100, 664
Cfr10I	RCCGGY	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	478, 620
CviAII	CATG	4 cut(s)	337, 409, 571, 756
CviJI	RGCY	6 cut(s)	131, 328, 356, 438, 588, 770
CviKI_1	RGCY	6 cut(s)	131, 328, 356, 438, 588, 770
CviQI	GTAC	2 cut(s)	478, 620
DdeI	CTNAG	6 cut(s)	14, 93, 357, 525, 616, 623
DpnI	GATC	4 cut(s)	19, 125, 316, 774
DpnII	GATC	4 cut(s)	17, 123, 314, 772
Eco130I	CCWWGG	2 cut(s)	421, 500
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	686
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRI	GAATTC	1 cut(s)	600
EcoT14I	CCWWGG	2 cut(s)	421, 500
ErhI	CCWWGG	2 cut(s)	421, 500
FaeI	CATG	4 cut(s)	340, 412, 574, 759
FalI	AAGNNNNNCTT	2 cut(s)	484, 516
FaqI	GGGAC	3 cut(s)	522, 581, 671
FatI	CATG	4 cut(s)	336, 408, 570, 755
FauI	CCCGC	1 cut(s)	558
FbaI	TGATCA	1 cut(s)	772
FblI	GTMKAC	1 cut(s)	333
FokI	GGATG	2 cut(s)	75, 458
FspBI	CTAG	2 cut(s)	128, 231
GsaI	CCCAGC	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	328
HapII	CCGG	2 cut(s)	329, 439
Hin1II	CATG	4 cut(s)	340, 412, 574, 759
HincII	GTYRAC	1 cut(s)	753
HindII	GTYRAC	1 cut(s)	753
HinfI	GANTC	2 cut(s)	107, 455
HpaII	CCGG	2 cut(s)	329, 439
HphI	GGTGA	1 cut(s)	595
Hpy166II	GTNNAC	3 cut(s)	334, 613, 753
Hpy188I	TCNGA	1 cut(s)	660
Hpy188III	TCNNGA	3 cut(s)	236, 472, 605
Hpy8I	GTNNAC	3 cut(s)	334, 613, 753
HpyAV	CCTTC	1 cut(s)	185
HpyCH4III	ACNGT	2 cut(s)	283, 302
HpyCH4IV	ACGT	2 cut(s)	204, 468
HpyCH4V	TGCA	4 cut(s)	4, 47, 404, 692
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	6 cut(s)	14, 93, 357, 525, 616, 623
HpySE526I	ACGT	2 cut(s)	204, 468
Hsp92II	CATG	4 cut(s)	340, 412, 574, 759
Ksp22I	TGATCA	1 cut(s)	772
Kzo9I	GATC	4 cut(s)	17, 123, 314, 772
MaeI	CTAG	2 cut(s)	128, 231
MaeII	ACGT	2 cut(s)	204, 468
MaeIII	GTNAC	2 cut(s)	34, 464
MalI	GATC	4 cut(s)	19, 125, 316, 774
MboI	GATC	4 cut(s)	17, 123, 314, 772
MboII	GAAGA	6 cut(s)	91, 251, 308, 488, 679, 714
MflI	RGATCY	1 cut(s)	123
MluCI	AATT	8 cut(s)	26, 61, 150, 379, 546, 600, 644, 670
MnlI	CCTC	4 cut(s)	61, 102, 132, 435
MseI	TTAA	4 cut(s)	249, 486, 648, 681
MspCI	CTTAAG	1 cut(s)	485
MspI	CCGG	2 cut(s)	329, 439
MwoI	GCNNNNNNNGC	1 cut(s)	401
NdeII	GATC	4 cut(s)	17, 123, 314, 772
NlaIII	CATG	4 cut(s)	340, 412, 574, 759
NlaIV	GGNNCC	2 cut(s)	125, 228
NspI	RCATGY	1 cut(s)	574
PciI	ACATGT	1 cut(s)	570
PfeI	GAWTC	2 cut(s)	107, 455
PpuMI	RGGWCCY	1 cut(s)	227
PscI	ACATGT	1 cut(s)	570
PsiI	TTATAA	1 cut(s)	201
Psp1406I	AACGTT	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	227
PspFI	CCCAGC	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	125, 228
PspPI	GGNCC	1 cut(s)	227
PspPPI	RGGWCCY	1 cut(s)	227
PstNI	CAGNNNCTG	2 cut(s)	100, 664
PsuI	RGATCY	1 cut(s)	123
RsaI	GTAC	2 cut(s)	479, 621
RsaNI	GTAC	2 cut(s)	478, 620
SaqAI	TTAA	4 cut(s)	249, 486, 648, 681
Sau3AI	GATC	4 cut(s)	17, 123, 314, 772
Sau96I	GGNCC	1 cut(s)	227
ScaI	AGTACT	1 cut(s)	621
SetI	ASST	6 cut(s)	133, 207, 423, 471, 590, 666
SfcI	CTRYAG	2 cut(s)	256, 744
SinI	GGWCC	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	8 cut(s)	26, 61, 150, 379, 546, 600, 644, 670
SsiI	CCGC	3 cut(s)	175, 518, 565
SspMI	CTAG	2 cut(s)	128, 231
StyI	CCWWGG	2 cut(s)	421, 500
TaaI	ACNGT	2 cut(s)	283, 302
TaiI	ACGT	2 cut(s)	207, 471
TasI	AATT	8 cut(s)	26, 61, 150, 379, 546, 600, 644, 670
TatI	WGTACW	2 cut(s)	477, 619
TfiI	GAWTC	2 cut(s)	107, 455
Tru1I	TTAA	4 cut(s)	249, 486, 648, 681
Tru9I	TTAA	4 cut(s)	249, 486, 648, 681
TscAI	CASTG	1 cut(s)	163
TspDTI	ATGAA	3 cut(s)	120, 425, 555
TspRI	CASTG	1 cut(s)	163
Vha464I	CTTAAG	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	5 cut(s)	26, 379, 600, 644, 670
XceI	RCATGY	1 cut(s)	574
XcmI	CCANNNNNNNNNTGG	1 cut(s)	174
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	2 cut(s)	128, 231
ZrmI	AGTACT	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.