Rroxscaffold_1G00015710

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
19606541 .. 19609282
2742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00015710.1

Sequence Viewer

Length: 360 bp
ATGCTTCGATTTGCGGCGGAGACTGCGGTGGATAAGGCCATGGAGATAGACCACATCAGCGGGACCTTTGCGGACTTGGTTTATTGTGATTCATTGTTCTCTGACAATCCATATCTTAGTTGTGTTCATCTTCTTCAAGAAACAAAGCTTCATTTGGACTCTACTGCTCTAGGTAGCAAGACAGAAGCTAAGGCGACTTCTCCTGCCCGTACTAGTTCCAACACTACTGCTCCTGGTAATCTGGGCTGGGACATGTATGTTTTGGTGAGCTACTTGGTGGGAATTCTAGAAGTTTACTTACCTAGCATTGATTTGACCATTTCTTCCACTTCTAATGAAGGTGCGGTAGTGTTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.76

Weight (kDa)

4.49

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019331)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 14, 17, 26, 60, 71, 344
AcsI RAATTY 1 cut(s) 282
AfaI GTAC 1 cut(s) 211
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 1 cut(s) 137
AhlI ACTAGT 1 cut(s) 212
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 3 cut(s) 148, 188, 270
AluI AGCT 3 cut(s) 148, 188, 270
Alw26I GTCTC 1 cut(s) 14
AoxI GGCC 1 cut(s) 36
ApoI RAATTY 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 277
AvaII GGWCC 1 cut(s) 63
BarI GAAGNNNNNNTAC 2 cut(s) 282, 314
BciT130I CCWGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 14
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 4 cut(s) 170, 213, 287, 303
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 234
Bpu10I CCTNAGC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 39
BsaXI ACNNNNNCTCC 2 cut(s) 214, 244
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 39
BseYI CCCAGC 1 cut(s) 246
BshFI GGCC 1 cut(s) 38
BslFI GGGAC 2 cut(s) 76, 263
BsmAI GTCTC 1 cut(s) 14
BsmFI GGGAC 2 cut(s) 76, 263
BsnI GGCC 1 cut(s) 38
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 6 cut(s) 14, 17, 26, 60, 71, 344
BspANI GGCC 1 cut(s) 38
BspLI GGNNCC 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 116, 189
BstDSI CCRYGG 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 14
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 232
BsuRI GGCC 1 cut(s) 38
BtgI CCRYGG 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 63
Csp6I GTAC 1 cut(s) 210
CviAII CATG 3 cut(s) 40, 253, 357
CviJI RGCY 5 cut(s) 38, 148, 188, 246, 270
CviKI_1 RGCY 5 cut(s) 38, 148, 188, 246, 270
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 2 cut(s) 116, 189
EciI GGCGGA 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 63
EcoRI GAATTC 1 cut(s) 282
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 3 cut(s) 43, 256, 360
FaiI YATR 5 cut(s) 41, 112, 254, 258, 358
FaqI GGGAC 2 cut(s) 76, 263
FatI CATG 3 cut(s) 39, 252, 356
FauI CCCGC 1 cut(s) 53
Fnu4HI GCNGC 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 4 cut(s) 170, 213, 287, 303
GluI GCNGC 1 cut(s) 15
GsaI CCCAGC 1 cut(s) 250
HaeIII GGCC 1 cut(s) 38
Hin1II CATG 3 cut(s) 43, 256, 360
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 2 cut(s) 89, 158
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 2 cut(s) 137, 287
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 1 cut(s) 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 2 cut(s) 116, 189
Hsp92II CATG 3 cut(s) 43, 256, 360
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 5 cut(s) 216, 219, 227, 232, 246
MaeI CTAG 4 cut(s) 170, 213, 287, 303
MboII GAAGA 3 cut(s) 122, 125, 315
MluCI AATT 1 cut(s) 282
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 1 cut(s) 243
MspA1I CMGCKG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 23
NcoI CCATGG 1 cut(s) 39
NlaIII CATG 3 cut(s) 43, 256, 360
NlaIV GGNNCC 1 cut(s) 64
NspI RCATGY 1 cut(s) 256
PciI ACATGT 1 cut(s) 252
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 1 cut(s) 16
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PpuMI RGGWCCY 1 cut(s) 63
PscI ACATGT 1 cut(s) 252
Psp5II RGGWCCY 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 232
PspFI CCCAGC 1 cut(s) 246
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 1 cut(s) 63
PspPPI RGGWCCY 1 cut(s) 63
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SatI GCNGC 1 cut(s) 15
Sau96I GGNCC 1 cut(s) 63
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 1 cut(s) 234
SetI ASST 7 cut(s) 68, 150, 175, 190, 272, 304, 343
SinI GGWCC 1 cut(s) 63
SpeI ACTAGT 1 cut(s) 212
Sse9I AATT 1 cut(s) 282
SsiI CCGC 6 cut(s) 14, 17, 26, 60, 71, 344
SspMI CTAG 4 cut(s) 170, 213, 287, 303
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 1 cut(s) 39
TaqI TCGA 1 cut(s) 7
TasI AATT 1 cut(s) 282
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 1 cut(s) 89
TspDTI ATGAA 4 cut(s) 81, 116, 140, 351
VpaK11BI GGWCC 1 cut(s) 63
XapI RAATTY 1 cut(s) 282
XbaI TCTAGA 1 cut(s) 286
XceI RCATGY 1 cut(s) 256
XspI CTAG 4 cut(s) 170, 213, 287, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.