Rorug01G0078400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0019331
Physical Location & Seq
Reverse (-)
12777567 .. 12778648
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0078400.1

Sequence Viewer

Length: 1017 bp
ATGGGACATCTCATCCCCTTCTTGGAGCTCGCCAACTGCCTCATCGCGCATCACAATTTCCACGCCATAGTTGTCGTCATTTCATCCAACACTTCTCCTAAACAATCCCAGGTCATCCAATCCGCCATGACCCCGAAACTTTTCGACATCATTGAGATTCCACCACTAGACACCTTCGGCCAAGTCAACGCCGCTGGTTCAGTCTTCACACAGCTCCCGGCCATTATGCTTGATGCCCGGTCCTCTCTCCGGTCCGCCATCTCGGCCAAGGACTTCAAGCCGGCAGCCATGATCGTCGATCTTTTCTGCACCGCTGTTCTTCCCGTGGTCGATGAGTTCCACATGCTCAAGTATGAGGTGGAAGGAGAATACTTGGATAAAAAAGAACCGCTCAAGATCCCAGGTTGCAAGCCTGTTCGACCGGAAGATGTTAAGCCCATGATGAACAGAAAAGATCCCAAATACGAGTCCTTCATACGTATTGGGGTAGAGATAGCCGAGATGAGTGATGGGATTTTGGTTAACACTTGGGAAGATCTGGAGTCAATGAGTCTTAGACCCATGAGAGAGGATCCAAAGTGGAAGCAGATCCTTAAGGTTCCGGTCCATACTTTCGGTCCCATGATTAGGCAGGCAGGGAGCTCCACTCCGAGGAGCGAGGTGTTGGGTTGGCTGGACATGCAGCCCAATGCCTCTGTGATTTACATTTCTTTTGGGAGTGGTGGGGTTCTGTTGGCTGATCAAATTACTGAGATGGCTTGGGGTATAGAGCTTAGCGCTCAGAGATTTATATGGGTAGTCCATCCACCAAGCAAAGATGGTGACAAAGGCAATGACATTTCAGACTACTTGCCTGAAGGGTTCATGGCTCGGACTCGTGACAAGGGTCTAGTGGTCACCACTTGGGCTCCTCAGGTGGAAATCTTGGCTCATTCATCAGTCGGATGGTTCTTGTCACACTGTGGTTGGAACTCGTCGCTGGAGAGTATACTGAATGGTGTGCCAATGATCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

338

Amino Acids

37.54

Weight (kDa)

5.5

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 230 - 337 6.4e-13 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019331)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c23g0500751 RchiOBHm_Chr4g0405341 RchiOBHm_Chr4g0409081
rosa_roxburghii Rroxscaffold_1G00015710
rosa_rugosa Rorug01G0078400 Rorug05G0156100
rosa_samantha Rh1BG099800 Rh6BG285900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 391
AccI GTMKAC 1 cut(s) 988
AccII CGCG 1 cut(s) 47
AciI CCGC 5 cut(s) 123, 192, 255, 312, 389
AclWI GGATC 5 cut(s) 391, 449, 566, 579, 583
AcoI YGGCCR 3 cut(s) 178, 219, 264
AcuI CTGAAG 1 cut(s) 876
AdeI CACNNNGTG 1 cut(s) 962
AfeI AGCGCT 1 cut(s) 778
AfiI CCNNNNNNNGG 4 cut(s) 22, 249, 627, 651
AflII CTTAAG 1 cut(s) 593
AgsI TTSAA 1 cut(s) 277
AjnI CCWGG 2 cut(s) 108, 400
AluBI AGCT 4 cut(s) 28, 214, 642, 772
AluI AGCT 4 cut(s) 28, 214, 642, 772
Alw21I GWGCWC 2 cut(s) 30, 644
AlwI GGATC 5 cut(s) 391, 449, 566, 579, 583
Aor51HI AGCGCT 1 cut(s) 778
AoxI GGCC 3 cut(s) 178, 219, 264
ApeKI GCWGC 2 cut(s) 284, 682
Asp700I GAANNNNTTC 1 cut(s) 140
AspLEI GCGC 2 cut(s) 49, 779
AspS9I GGNCC 4 cut(s) 240, 252, 604, 617
AsuC2I CCSGG 2 cut(s) 218, 238
AsuHPI GGTGA 2 cut(s) 833, 889
AvaII GGWCC 4 cut(s) 240, 252, 604, 617
AxyI CCTNAGG 1 cut(s) 912
BamHI GGATCC 1 cut(s) 571
BanII GRGCYC 3 cut(s) 30, 644, 910
BauI CACGAG 1 cut(s) 876
BbsI GAAGAC 1 cut(s) 196
Bbv12I GWGCWC 2 cut(s) 30, 644
BbvI GCAGC 2 cut(s) 296, 694
BccI CCATC 6 cut(s) 266, 503, 748, 810, 812, 939
BciT130I CCWGG 2 cut(s) 110, 402
BclI TGATCA 2 cut(s) 739, 1008
BcnI CCSGG 2 cut(s) 218, 238
BfaI CTAG 2 cut(s) 167, 890
BfoI RGCGCY 1 cut(s) 780
BfrI CTTAAG 1 cut(s) 593
BglI GCCNNNNNGGC 1 cut(s) 263
BglII AGATCT 1 cut(s) 535
BisI GCNGC 3 cut(s) 192, 285, 683
BlpI GCTNAGC 1 cut(s) 773
BlsI GCNGC 3 cut(s) 193, 286, 684
Bme1390I CCNGG 4 cut(s) 110, 218, 238, 402
Bme18I GGWCC 4 cut(s) 240, 252, 604, 617
BmgT120I GGNCC 4 cut(s) 240, 252, 604, 617
BmiI GGNNCC 4 cut(s) 573, 600, 619, 909
BmrFI CCNGG 4 cut(s) 110, 218, 238, 402
BmsI GCATC 2 cut(s) 58, 223
BoxI GACNNNNGTC 1 cut(s) 885
BpiI GAAGAC 1 cut(s) 196
BplI GAGNNNNNCTC 2 cut(s) 631, 663
BpmI CTGGAG 2 cut(s) 560, 1001
Bpu1102I GCTNAGC 1 cut(s) 773
BpuEI CTTGAG 2 cut(s) 332, 377
BpuMI CCSGG 2 cut(s) 218, 238
BsaAI YACGTR 1 cut(s) 479
BsaJI CCNNGG 5 cut(s) 108, 267, 324, 400, 650
BsaWI WCCGGW 3 cut(s) 249, 421, 601
BsaXI ACNNNNNCTCC 2 cut(s) 892, 922
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 249, 627, 651
Bse118I RCCGGY 1 cut(s) 280
Bse21I CCTNAGG 1 cut(s) 912
Bse3DI GCAATG 1 cut(s) 838
BseBI CCWGG 2 cut(s) 110, 402
BseDI CCNNGG 5 cut(s) 108, 267, 324, 400, 650
BseGI GGATG 5 cut(s) 12, 83, 114, 802, 950
BseLI CCNNNNNNNGG 4 cut(s) 22, 249, 627, 651
BseMI GCAATG 1 cut(s) 838
BseMII CTCAG 3 cut(s) 741, 794, 926
BseRI GAGGAG 2 cut(s) 667, 900
BseXI GCAGC 2 cut(s) 296, 694
BsgI GTGCAG 1 cut(s) 292
Bsh1236I CGCG 1 cut(s) 47
Bsh1285I CGRYCG 1 cut(s) 422
BshFI GGCC 3 cut(s) 180, 221, 266
BsiEI CGRYCG 1 cut(s) 422
BsiHKAI GWGCWC 2 cut(s) 30, 644
BsiSI CCGG 6 cut(s) 218, 238, 250, 281, 422, 602
BslFI GGGAC 2 cut(s) 18, 603
BslI CCNNNNNNNGG 4 cut(s) 22, 249, 627, 651
BsmFI GGGAC 2 cut(s) 18, 603
BsnI GGCC 3 cut(s) 180, 221, 266
Bsp1286I GDGCHC 3 cut(s) 30, 644, 910
Bsp143I GATC 9 cut(s) 291, 298, 396, 454, 535, 571, 588, 739, 1008
Bsp1720I GCTNAGC 1 cut(s) 773
BspACI CCGC 5 cut(s) 123, 192, 255, 312, 389
BspANI GGCC 3 cut(s) 180, 221, 266
BspCNI CTCAG 3 cut(s) 742, 793, 925
BspFNI CGCG 1 cut(s) 47
BspLI GGNNCC 4 cut(s) 573, 600, 619, 909
BspPI GGATC 5 cut(s) 391, 449, 566, 579, 583
BspTI CTTAAG 1 cut(s) 593
BsrBI CCGCTC 1 cut(s) 391
BsrDI GCAATG 1 cut(s) 838
BsrFI RCCGGY 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 5 cut(s) 108, 267, 324, 400, 650
BssMI GATC 9 cut(s) 291, 298, 396, 454, 535, 571, 588, 739, 1008
BssNAI GTATAC 1 cut(s) 989
BssSI CACGAG 1 cut(s) 876
BssT1I CCWWGG 1 cut(s) 267
Bst1107I GTATAC 1 cut(s) 989
Bst2BI CACGAG 1 cut(s) 876
Bst2UI CCWGG 2 cut(s) 110, 402
Bst4CI ACNGT 1 cut(s) 962
BstAFI CTTAAG 1 cut(s) 593
BstBAI YACGTR 1 cut(s) 479
BstC8I GCNNGC 4 cut(s) 30, 282, 410, 633
BstDEI CTNAG 5 cut(s) 554, 750, 773, 780, 912
BstDSI CCRYGG 1 cut(s) 324
BstEII GGTNACC 1 cut(s) 895
BstF5I GGATG 5 cut(s) 12, 83, 114, 802, 950
BstFNI CGCG 1 cut(s) 47
BstH2I RGCGCY 1 cut(s) 780
BstHHI GCGC 2 cut(s) 49, 779
BstKTI GATC 9 cut(s) 294, 301, 399, 457, 538, 574, 591, 742, 1011
BstMBI GATC 9 cut(s) 291, 298, 396, 454, 535, 571, 588, 739, 1008
BstMCI CGRYCG 1 cut(s) 422
BstMWI GCNNNNNNNGC 2 cut(s) 263, 679
BstNI CCWGG 2 cut(s) 110, 402
BstNSI RCATGY 2 cut(s) 346, 682
BstPAI GACNNNNGTC 1 cut(s) 885
BstPI GGTNACC 1 cut(s) 895
BstSCI CCNGG 4 cut(s) 108, 216, 236, 400
BstSNI TACGTA 1 cut(s) 479
BstUI CGCG 1 cut(s) 47
BstV1I GCAGC 2 cut(s) 296, 694
BstV2I GAAGAC 1 cut(s) 196
BstX2I RGATCY 5 cut(s) 396, 454, 535, 571, 588
BstYI RGATCY 5 cut(s) 396, 454, 535, 571, 588
BstZ17I GTATAC 1 cut(s) 989
Bsu36I CCTNAGG 1 cut(s) 912
BsuRI GGCC 3 cut(s) 180, 221, 266
BtgI CCRYGG 1 cut(s) 324
BtgZI GCGATG 1 cut(s) 28
BtsCI GGATG 5 cut(s) 12, 83, 114, 802, 950
BtsIMutI CAGTG 1 cut(s) 958
Cac8I GCNNGC 4 cut(s) 30, 282, 410, 633
CfoI GCGC 2 cut(s) 49, 779
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 4 cut(s) 240, 252, 604, 617
CpoI CGGWCCG 1 cut(s) 252
CspI CGGWCCG 1 cut(s) 252
CviAII CATG 9 cut(s) 127, 289, 343, 439, 562, 622, 679, 865, 1014
DdeI CTNAG 5 cut(s) 554, 750, 773, 780, 912
DpnI GATC 9 cut(s) 293, 300, 398, 456, 537, 573, 590, 741, 1010
DpnII GATC 9 cut(s) 291, 298, 396, 454, 535, 571, 588, 739, 1008
DraIII CACNNNGTG 1 cut(s) 962
EaeI YGGCCR 3 cut(s) 178, 219, 264
EciI GGCGGA 2 cut(s) 112, 244
Ecl136II GAGCTC 2 cut(s) 28, 642
Eco105I TACGTA 1 cut(s) 479
Eco130I CCWWGG 1 cut(s) 267
Eco24I GRGCYC 3 cut(s) 30, 644, 910
Eco47I GGWCC 4 cut(s) 240, 252, 604, 617
Eco47III AGCGCT 1 cut(s) 778
Eco53kI GAGCTC 2 cut(s) 28, 642
Eco57I CTGAAG 1 cut(s) 876
Eco81I CCTNAGG 1 cut(s) 912
Eco91I GGTNACC 1 cut(s) 895
EcoICRI GAGCTC 2 cut(s) 28, 642
EcoO65I GGTNACC 1 cut(s) 895
EcoRII CCWGG 2 cut(s) 108, 400
EcoT14I CCWWGG 1 cut(s) 267
EcoT38I GRGCYC 3 cut(s) 30, 644, 910
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 9 cut(s) 130, 292, 346, 442, 565, 625, 682, 868, 1017
FaqI GGGAC 2 cut(s) 18, 603
FatI CATG 9 cut(s) 126, 288, 342, 438, 561, 621, 678, 864, 1013
FbaI TGATCA 2 cut(s) 739, 1008
FblI GTMKAC 1 cut(s) 988
Fnu4HI GCNGC 3 cut(s) 192, 285, 683
FokI GGATG 4 cut(s) 70, 101, 789, 957
FriOI GRGCYC 3 cut(s) 30, 644, 910
Fsp4HI GCNGC 3 cut(s) 192, 285, 683
FspBI CTAG 2 cut(s) 167, 890
GlaI GCGC 2 cut(s) 48, 778
GluI GCNGC 3 cut(s) 192, 285, 683
GsuI CTGGAG 2 cut(s) 560, 1001
HaeII RGCGCY 1 cut(s) 780
HaeIII GGCC 3 cut(s) 180, 221, 266
HapII CCGG 6 cut(s) 218, 238, 250, 281, 422, 602
HhaI GCGC 2 cut(s) 49, 779
Hin1II CATG 9 cut(s) 130, 292, 346, 442, 565, 625, 682, 868, 1017
Hin6I GCGC 2 cut(s) 47, 777
HinP1I GCGC 2 cut(s) 47, 777
HincII GTYRAC 2 cut(s) 187, 523
HindII GTYRAC 2 cut(s) 187, 523
HinfI GANTC 5 cut(s) 157, 467, 542, 550, 874
HpaI GTTAAC 1 cut(s) 523
HpaII CCGG 6 cut(s) 218, 238, 250, 281, 422, 602
HphI GGTGA 2 cut(s) 833, 889
Hpy166II GTNNAC 3 cut(s) 187, 523, 989
Hpy188I TCNGA 5 cut(s) 651, 783, 844, 873, 944
Hpy188III TCNNGA 3 cut(s) 394, 539, 878
Hpy8I GTNNAC 3 cut(s) 187, 523, 989
Hpy99I CGWCG 2 cut(s) 299, 979
HpyAV CCTTC 5 cut(s) 28, 184, 356, 481, 851
HpyCH4III ACNGT 1 cut(s) 962
HpyCH4IV ACGT 1 cut(s) 478
HpyCH4V TGCA 3 cut(s) 309, 408, 682
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 679
HpyF3I CTNAG 5 cut(s) 554, 750, 773, 780, 912
HpySE526I ACGT 1 cut(s) 478
Hsp92II CATG 9 cut(s) 130, 292, 346, 442, 565, 625, 682, 868, 1017
HspAI GCGC 2 cut(s) 47, 777
KroI GCCGGC 1 cut(s) 280
KroNI GCCGGC 1 cut(s) 282
Ksp22I TGATCA 2 cut(s) 739, 1008
KspAI GTTAAC 1 cut(s) 523
Kzo9I GATC 9 cut(s) 291, 298, 396, 454, 535, 571, 588, 739, 1008
LmnI GCTCC 6 cut(s) 25, 219, 639, 647, 654, 913
Lsp1109I GCAGC 2 cut(s) 296, 694
LweI GCATC 2 cut(s) 58, 223
MaeI CTAG 2 cut(s) 167, 890
MaeII ACGT 1 cut(s) 478
MaeIII GTNAC 4 cut(s) 821, 878, 895, 954
MalI GATC 9 cut(s) 293, 300, 398, 456, 537, 573, 590, 741, 1010
MbiI CCGCTC 1 cut(s) 391
MboI GATC 9 cut(s) 291, 298, 396, 454, 535, 571, 588, 739, 1008
MboII GAAGA 4 cut(s) 196, 311, 437, 545
MflI RGATCY 5 cut(s) 396, 454, 535, 571, 588
MhlI GDGCHC 3 cut(s) 30, 644, 910
MluCI AATT 2 cut(s) 55, 744
MlyI GAGTC 4 cut(s) 476, 551, 559, 868
MmeI TCCRAC 3 cut(s) 111, 922, 947
MnlI CCTC 8 cut(s) 50, 253, 349, 562, 645, 652, 703, 921
MroNI GCCGGC 1 cut(s) 280
MroXI GAANNNNTTC 1 cut(s) 140
MseI TTAA 3 cut(s) 432, 522, 594
MspA1I CMGCKG 2 cut(s) 194, 314
MspCI CTTAAG 1 cut(s) 593
MspI CCGG 6 cut(s) 218, 238, 250, 281, 422, 602
MspR9I CCNGG 4 cut(s) 110, 218, 238, 402
MvaI CCWGG 2 cut(s) 110, 402
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 2 cut(s) 263, 679
NaeI GCCGGC 1 cut(s) 282
NciI CCSGG 2 cut(s) 218, 238
NdeII GATC 9 cut(s) 291, 298, 396, 454, 535, 571, 588, 739, 1008
NgoMIV GCCGGC 1 cut(s) 280
NlaIII CATG 9 cut(s) 130, 292, 346, 442, 565, 625, 682, 868, 1017
NlaIV GGNNCC 4 cut(s) 573, 600, 619, 909
NmeAIII GCCGAG 2 cut(s) 242, 523
NmuCI GTSAC 4 cut(s) 821, 878, 895, 954
NspI RCATGY 2 cut(s) 346, 682
PdiI GCCGGC 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 157
PkrI GCNGC 3 cut(s) 193, 286, 684
PleI GAGTC 4 cut(s) 475, 550, 558, 868
PpsI GAGTC 4 cut(s) 475, 550, 558, 868
Ppu21I YACGTR 1 cut(s) 479
PshAI GACNNNNGTC 1 cut(s) 885
Psp124BI GAGCTC 2 cut(s) 30, 644
Psp6I CCWGG 2 cut(s) 108, 400
PspEI GGTNACC 1 cut(s) 895
PspGI CCWGG 2 cut(s) 108, 400
PspN4I GGNNCC 4 cut(s) 573, 600, 619, 909
PspPI GGNCC 4 cut(s) 240, 252, 604, 617
PsuI RGATCY 5 cut(s) 396, 454, 535, 571, 588
Rsr2I CGGWCCG 1 cut(s) 252
RsrII CGGWCCG 1 cut(s) 252
SacI GAGCTC 2 cut(s) 30, 644
SaqAI TTAA 3 cut(s) 432, 522, 594
SatI GCNGC 3 cut(s) 192, 285, 683
Sau3AI GATC 9 cut(s) 291, 298, 396, 454, 535, 571, 588, 739, 1008
Sau96I GGNCC 4 cut(s) 240, 252, 604, 617
SchI GAGTC 4 cut(s) 476, 551, 559, 868
ScrFI CCNGG 4 cut(s) 110, 218, 238, 402
SduI GDGCHC 3 cut(s) 30, 644, 910
SfaNI GCATC 2 cut(s) 58, 223
SinI GGWCC 4 cut(s) 240, 252, 604, 617
SmlI CTYRAG 3 cut(s) 347, 392, 593
SmoI CTYRAG 3 cut(s) 347, 392, 593
SnaBI TACGTA 1 cut(s) 479
Sse9I AATT 2 cut(s) 55, 744
SsiI CCGC 5 cut(s) 123, 192, 255, 312, 389
SspMI CTAG 2 cut(s) 167, 890
SstI GAGCTC 2 cut(s) 30, 644
StyD4I CCNGG 4 cut(s) 108, 216, 236, 400
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 1 cut(s) 962
TaiI ACGT 1 cut(s) 481
TaqI TCGA 4 cut(s) 144, 297, 330, 418
TaqII GACCGA 1 cut(s) 605
TasI AATT 2 cut(s) 55, 744
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 3 cut(s) 432, 522, 594
Tru9I TTAA 3 cut(s) 432, 522, 594
TscAI CASTG 1 cut(s) 965
TseFI GTSAC 4 cut(s) 821, 878, 895, 954
TseI GCWGC 2 cut(s) 284, 682
Tsp45I GTSAC 4 cut(s) 821, 878, 895, 954
TspDTI ATGAA 5 cut(s) 72, 458, 463, 853, 924
TspRI CASTG 1 cut(s) 965
Vha464I CTTAAG 1 cut(s) 593
VpaK11BI GGWCC 4 cut(s) 240, 252, 604, 617
XceI RCATGY 2 cut(s) 346, 682
XmiI GTMKAC 1 cut(s) 988
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 2 cut(s) 167, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.