Rorug05G0156100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0019331
Physical Location & Seq
Forward (+)
14566983 .. 14567294
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0156100.1

Sequence Viewer

Length: 312 bp
ATGGGACTCTGGATGTTAATGAGCTATAGACATAAGAAAAGGCATACTGACACTGGAGGCATCAAGAAGAGTTCTGGGAATGGTTCTAGATTTTCTATGTTACAAGATGAAGAGGAAGTTGACCCTCCAGAACCGGAAATTAATGATCAAAATACTTTAGCTGCTAAGGATACTCCCCTTATTGTGAAATTGTGGAAAAATTTTGAAGACAAGTTGAAGAACTCTCATGATTCTGGTGCTTCTAATAGGGAAAAACAAGCCAAGGTGGCCACTGACCATATTGATAAGAGTACAGACAATAGCAAGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.66

Weight (kDa)

6.91

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019331)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c23g0500751 RchiOBHm_Chr4g0405341 RchiOBHm_Chr4g0409081
rosa_roxburghii Rroxscaffold_1G00015710
rosa_rugosa Rorug01G0078400 Rorug05G0156100
rosa_samantha Rh1BG099800 Rh6BG285900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 1 cut(s) 199
AfaI GTAC 1 cut(s) 292
AgsI TTSAA 2 cut(s) 206, 217
AluBI AGCT 2 cut(s) 24, 161
AluI AGCT 2 cut(s) 24, 161
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 199
AseI ATTAAT 1 cut(s) 141
BalI TGGCCA 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 148
BciVI GTATCC 1 cut(s) 163
BclI TGATCA 1 cut(s) 145
BfaI CTAG 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 25
BfuI GTATCC 1 cut(s) 163
BglI GCCNNNNNGGC 1 cut(s) 266
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
BmsI GCATC 1 cut(s) 69
BpiI GAAGAC 1 cut(s) 213
BpmI CTGGAG 2 cut(s) 75, 111
Bpu10I CCTNAGC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 261
BsaWI WCCGGW 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 58
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 148
BshFI GGCC 1 cut(s) 269
BsiSI CCGG 1 cut(s) 134
BslFI GGGAC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 269
Bsp143I GATC 1 cut(s) 145
BspANI GGCC 1 cut(s) 269
BspHI TCATGA 1 cut(s) 226
BsrI ACTGG 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 261
Bst6I CTCTTC 2 cut(s) 62, 105
BstDEI CTNAG 2 cut(s) 165, 309
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstSFI CTRYAG 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 213
BsuI GTATCC 1 cut(s) 163
BsuRI GGCC 1 cut(s) 269
BtsCI GGATG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 51, 270
CciI TCATGA 1 cut(s) 226
Csp6I GTAC 1 cut(s) 291
CviAII CATG 1 cut(s) 227
CviJI RGCY 4 cut(s) 24, 161, 260, 269
CviKI_1 RGCY 4 cut(s) 24, 161, 260, 269
CviQI GTAC 1 cut(s) 291
DdeI CTNAG 2 cut(s) 165, 309
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 267
Eam1104I CTCTTC 2 cut(s) 62, 105
EarI CTCTTC 2 cut(s) 62, 105
Eco130I CCWWGG 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 1 cut(s) 230
FaiI YATR 6 cut(s) 27, 33, 45, 98, 228, 279
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 226
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 1 cut(s) 87
GluI GCNGC 1 cut(s) 162
GsuI CTGGAG 2 cut(s) 75, 111
HaeIII GGCC 1 cut(s) 269
HapII CCGG 1 cut(s) 134
Hin1II CATG 1 cut(s) 230
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 2 cut(s) 6, 230
HpaII CCGG 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 121
Hpy188III TCNNGA 5 cut(s) 10, 64, 87, 128, 227
Hpy8I GTNNAC 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 2 cut(s) 165, 309
Hsp92II CATG 1 cut(s) 230
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 1 cut(s) 145
LpnPI CCDG 5 cut(s) 39, 60, 141, 147, 219
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 1 cut(s) 69
MaeI CTAG 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 99
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 4 cut(s) 79, 122, 218, 229
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 3 cut(s) 138, 188, 199
MluNI TGGCCA 1 cut(s) 269
MnlI CCTC 3 cut(s) 50, 106, 135
Mox20I TGGCCA 1 cut(s) 269
MscI TGGCCA 1 cut(s) 269
MseI TTAA 2 cut(s) 17, 141
Msp20I TGGCCA 1 cut(s) 269
MspI CCGG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 266
NdeII GATC 1 cut(s) 145
NlaIII CATG 1 cut(s) 230
PagI TCATGA 1 cut(s) 226
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 1 cut(s) 163
PshBI ATTAAT 1 cut(s) 141
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
SaqAI TTAA 2 cut(s) 17, 141
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 1 cut(s) 145
SetI ASST 3 cut(s) 26, 163, 267
SfaNI GCATC 1 cut(s) 69
SfcI CTRYAG 1 cut(s) 25
Sse9I AATT 3 cut(s) 138, 188, 199
SspMI CTAG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 261
TasI AATT 3 cut(s) 138, 188, 199
TatI WGTACW 1 cut(s) 290
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 2 cut(s) 17, 141
Tru9I TTAA 2 cut(s) 17, 141
TscAI CASTG 2 cut(s) 58, 277
TseI GCWGC 1 cut(s) 161
TspDTI ATGAA 1 cut(s) 123
TspRI CASTG 2 cut(s) 58, 277
VspI ATTAAT 1 cut(s) 141
XapI RAATTY 1 cut(s) 199
XbaI TCTAGA 1 cut(s) 86
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.