RchiOBHm_Chr0c22g0500601

Lethal(2) giant larvae protein homolog

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 174 bp
ATGGCCTTAAGGAGTCGGTGCTGGCAATTTCGCCCTCGTCGCCGCCAAGAAGCAGCTGGAATGTCATTGCCTGATAATCTTTCTGTTGTTGGAGTTCTCCATCAACCCAGTTCTCAGGGAAACAGACTGCTGATTGCATATGAGAATGGTCTGATTGTTCTCGGGATGCTTTAG

Protein Analysis

57

Amino Acids

6.41

Weight (kDa)

11.25

Isoelectric Point (pI)

73.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020454)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 43
AflII CTTAAG 1 cut(s) 7
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 53
AvaI CYCGRG 1 cut(s) 161
BbvI GCAGC 1 cut(s) 65
BccI CCATC 1 cut(s) 108
BfrI CTTAAG 1 cut(s) 7
BisI GCNGC 2 cut(s) 43, 54
BlsI GCNGC 2 cut(s) 44, 55
BmeT110I CYCGRG 1 cut(s) 161
BmrI ACTGGG 1 cut(s) 102
BmsI GCATC 1 cut(s) 156
BmuI ACTGGG 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 65
BseGI GGATG 1 cut(s) 171
BseMI GCAATG 1 cut(s) 65
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 65
BshFI GGCC 1 cut(s) 5
BsiHKCI CYCGRG 1 cut(s) 161
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 161
BspACI CCGC 1 cut(s) 43
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 127
BspTI CTTAAG 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 65
BsrI ACTGG 1 cut(s) 108
BstAFI CTTAAG 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 171
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 65
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 23
CviJI RGCY 2 cut(s) 5, 56
CviKI_1 RGCY 2 cut(s) 5, 56
DdeI CTNAG 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 161
FaiI YATR 2 cut(s) 139, 141
FauNDI CATATG 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 43, 54
Fsp4HI GCNGC 2 cut(s) 43, 54
GluI GCNGC 2 cut(s) 43, 54
HaeIII GGCC 1 cut(s) 5
HinfI GANTC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 163
Hpy99I CGWCG 1 cut(s) 42
HpyCH4V TGCA 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
HpyF3I CTNAG 1 cut(s) 114
LpnPI CCDG 5 cut(s) 7, 42, 84, 101, 121
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 1 cut(s) 156
MluCI AATT 1 cut(s) 26
MlyI GAGTC 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 1 cut(s) 45
MseI TTAA 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 56
MspCI CTTAAG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 39
NdeI CATATG 1 cut(s) 139
PkrI GCNGC 2 cut(s) 44, 55
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
PvuII CAGCTG 1 cut(s) 56
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 2 cut(s) 43, 54
SchI GAGTC 1 cut(s) 22
SetI ASST 1 cut(s) 58
SfaNI GCATC 1 cut(s) 156
SgeI CNNG 7 cut(s) 34, 48, 59, 69, 83, 120, 128
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 1 cut(s) 26
SsiI CCGC 1 cut(s) 43
TasI AATT 1 cut(s) 26
TauI GCSGC 1 cut(s) 45
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TseI GCWGC 1 cut(s) 53
Vha464I CTTAAG 1 cut(s) 7
XcmI CCANNNNNNNNNTGG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.