Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0020454

Physical Location & Seq

Genomic Coordinates Forward (+)

74011130 .. 74022956

Gene Structure 11827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG561800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCGTTAAGGAGTCTGTGTTGGCAATTTTGCCCTCGTCGCCGCCAAGAAGCAGCTGGAATATCATTGCCTGATAATCTTTCTGTTTTTGAGGTTCTCCATCAACCTAGTTCTCAGAGAAACAGACTGCTGATTGCATATGAGAATGATGGTGATATAATGTTTTGGGATATATCAACTGCTGAGTCTACCAAGGATCATAGATCTAAAAAGTTAGCTAACAATGTTGCGAAGCTAGAGTTATCATCAGATGACAAGAGACTCCCTGTCATAGTTTTACACTGGTTTGCAAATACGTTAAGTCATCATCCTAGGGGTCAACTCTTTGTTTATGGAGGTGAAGGAATTGGGTCTGAAGAAGTTCTCACGATATGGTTTTACTTCCAGCTGCTGGTGCAATGGAGAATGCTTGCTTTGGTGGATAGAGATGGGAAATACTCCTCAGCTCTGTCCAAGGAAGTTTCAGTTGACAAGTCTAATGCGAAACACACTTTGAAGAAGGGGGGTGCAAAGTGGCCTTTGACTGGATATCAAGATGGATATGTTCGAATATGGGATGCCACCTATCCAACTCCGTCGCTTATATTTGCTATAGGTCCTGAGGTTCTCACAACTGGAGGGTCAGCCAACATGCTAAAACCCGGTGGAACACTGTCAATGGAAGAGCTATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0002792 GO:0002793 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0023051 GO:0023057 GO:0030234 GO:0030695 GO:0031267 GO:0032879 GO:0032880 GO:0033500 GO:0042592 GO:0042593 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0046676 GO:0046883 GO:0046888 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048878 GO:0050708 GO:0050709 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051020 GO:0051046 GO:0051047 GO:0051048 GO:0051049 GO:0051050 GO:0051051 GO:0051222 GO:0051223 GO:0051224 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0090276 GO:0090278 GO:0098772 GO:1903530 GO:1903531 GO:1903532 GO:1904950 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 Synaptobrevin

Protein Analysis

224

Amino Acids

25.16

Weight (kDa)

7.79

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020454)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c22g0500601 RchiOBHm_Chr7g0206651
rosa_multiflora	Rmu_co7997612.1_g000001
rosa_samantha	Rh2AG219000 Rh2CG561800 Rh2DG225200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	391
AccI	GTMKAC	1 cut(s)	188
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	1 cut(s)	204
AcuI	CTGAAG	1 cut(s)	375
AfiI	CCNNNNNNNGG	2 cut(s)	391, 524
AgsI	TTSAA	1 cut(s)	496
AhdI	GACNNNNNGTC	1 cut(s)	266
AluBI	AGCT	6 cut(s)	56, 218, 235, 388, 446, 667
AluI	AGCT	6 cut(s)	56, 218, 235, 388, 446, 667
Alw26I	GTCTC	1 cut(s)	253
AlwI	GGATC	1 cut(s)	204
AlwNI	CAGNNNCTG	1 cut(s)	391
AoxI	GGCC	1 cut(s)	515
ApeKI	GCWGC	2 cut(s)	53, 388
Asp700I	GAANNNNTTC	1 cut(s)	360
AspA2I	CCTAGG	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	596
AsuC2I	CCSGG	1 cut(s)	642
AsuHPI	GGTGA	2 cut(s)	164, 350
AsuII	TTCGAA	1 cut(s)	547
AvaII	GGWCC	1 cut(s)	596
AvrII	CCTAGG	1 cut(s)	311
AxyI	CCTNAGG	1 cut(s)	600
BbvCI	CCTCAGC	1 cut(s)	442
BbvI	GCAGC	2 cut(s)	65, 375
BccI	CCATC	4 cut(s)	108, 143, 422, 530
BcnI	CCSGG	1 cut(s)	642
BcoDI	GTCTC	1 cut(s)	253
BfaI	CTAG	3 cut(s)	108, 236, 312
BfmI	CTRYAG	1 cut(s)	591
BglII	AGATCT	1 cut(s)	203
BisI	GCNGC	3 cut(s)	43, 54, 389
BlnI	CCTAGG	1 cut(s)	311
BlsI	GCNGC	3 cut(s)	44, 55, 390
Bme1390I	CCNGG	1 cut(s)	642
Bme18I	GGWCC	1 cut(s)	596
BmeRI	GACNNNNNGTC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	596
BmrFI	CCNGG	1 cut(s)	642
BmsI	GCATC	1 cut(s)	547
BpmI	CTGGAG	1 cut(s)	636
Bpu10I	CCTNAGC	1 cut(s)	442
Bpu14I	TTCGAA	1 cut(s)	547
BpuMI	CCSGG	1 cut(s)	642
BsaJI	CCNNGG	3 cut(s)	192, 311, 453
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	391, 524
Bse1I	ACTGG	3 cut(s)	287, 529, 619
Bse21I	CCTNAGG	1 cut(s)	600
Bse3DI	GCAATG	2 cut(s)	65, 404
BseDI	CCNNGG	3 cut(s)	192, 311, 453
BseGI	GGATG	2 cut(s)	307, 562
BseLI	CCNNNNNNNGG	2 cut(s)	391, 524
BseMI	GCAATG	2 cut(s)	65, 404
BseMII	CTCAG	4 cut(s)	128, 174, 456, 591
BseNI	ACTGG	3 cut(s)	287, 529, 619
BseRI	GAGGAG	1 cut(s)	430
BseXI	GCAGC	2 cut(s)	65, 375
BshFI	GGCC	1 cut(s)	517
BsiSI	CCGG	1 cut(s)	642
BslI	CCNNNNNNNGG	2 cut(s)	391, 524
BsmAI	GTCTC	1 cut(s)	253
BsmI	GAATGC	1 cut(s)	411
BsnI	GGCC	1 cut(s)	517
Bsp119I	TTCGAA	1 cut(s)	547
Bsp143I	GATC	2 cut(s)	196, 203
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	1 cut(s)	517
BspCNI	CTCAG	4 cut(s)	127, 175, 455, 592
BspPI	GGATC	1 cut(s)	204
BspQI	GCTCTTC	1 cut(s)	657
BspT104I	TTCGAA	1 cut(s)	547
BsrDI	GCAATG	2 cut(s)	65, 404
BsrI	ACTGG	3 cut(s)	287, 529, 619
BssECI	CCNNGG	3 cut(s)	192, 311, 453
BssMI	GATC	2 cut(s)	196, 203
BssT1I	CCWWGG	3 cut(s)	192, 311, 453
Bst4CI	ACNGT	1 cut(s)	654
Bst6I	CTCTTC	1 cut(s)	657
BstBI	TTCGAA	1 cut(s)	547
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	4 cut(s)	114, 183, 442, 600
BstF5I	GGATG	2 cut(s)	307, 562
BstKTI	GATC	2 cut(s)	199, 206
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	2 cut(s)	196, 203
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 394
BstNSI	RCATGY	1 cut(s)	634
BstSCI	CCNGG	1 cut(s)	640
BstSFI	CTRYAG	1 cut(s)	591
BstV1I	GCAGC	2 cut(s)	65, 375
BstX2I	RGATCY	1 cut(s)	203
BstYI	RGATCY	1 cut(s)	203
Bsu36I	CCTNAGG	1 cut(s)	600
BsuRI	GGCC	1 cut(s)	517
BtsCI	GGATG	2 cut(s)	307, 562
BtsIMutI	CAGTG	2 cut(s)	280, 650
Cac8I	GCNNGC	1 cut(s)	411
CaiI	CAGNNNCTG	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	596
CviAII	CATG	1 cut(s)	631
CviJI	RGCY	8 cut(s)	56, 218, 235, 388, 446, 517, 626, 667
CviKI_1	RGCY	8 cut(s)	56, 218, 235, 388, 446, 517, 626, 667
DdeI	CTNAG	4 cut(s)	114, 183, 442, 600
DpnI	GATC	2 cut(s)	198, 205
DpnII	GATC	2 cut(s)	196, 203
DriI	GACNNNNNGTC	1 cut(s)	266
Eam1104I	CTCTTC	1 cut(s)	657
Eam1105I	GACNNNNNGTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	657
Eco130I	CCWWGG	3 cut(s)	192, 311, 453
Eco32I	GATATC	1 cut(s)	530
Eco47I	GGWCC	1 cut(s)	596
Eco57I	CTGAAG	1 cut(s)	375
Eco81I	CCTNAGG	1 cut(s)	600
EcoO109I	RGGNCCY	1 cut(s)	596
EcoRV	GATATC	1 cut(s)	530
EcoT14I	CCWWGG	3 cut(s)	192, 311, 453
ErhI	CCWWGG	3 cut(s)	192, 311, 453
FaeI	CATG	1 cut(s)	634
FatI	CATG	1 cut(s)	630
FauNDI	CATATG	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	188
Fnu4HI	GCNGC	3 cut(s)	43, 54, 389
FokI	GGATG	2 cut(s)	294, 569
Fsp4HI	GCNGC	3 cut(s)	43, 54, 389
FspBI	CTAG	3 cut(s)	108, 236, 312
GluI	GCNGC	3 cut(s)	43, 54, 389
GsuI	CTGGAG	1 cut(s)	636
HaeIII	GGCC	1 cut(s)	517
HapII	CCGG	1 cut(s)	642
Hin1II	CATG	1 cut(s)	634
HincII	GTYRAC	2 cut(s)	320, 469
HindII	GTYRAC	2 cut(s)	320, 469
HinfI	GANTC	3 cut(s)	13, 185, 261
HpaII	CCGG	1 cut(s)	642
HphI	GGTGA	2 cut(s)	164, 350
Hpy166II	GTNNAC	3 cut(s)	189, 320, 469
Hpy188I	TCNGA	3 cut(s)	117, 250, 355
Hpy188III	TCNNGA	4 cut(s)	367, 533, 599, 672
Hpy8I	GTNNAC	3 cut(s)	189, 320, 469
Hpy99I	CGWCG	2 cut(s)	42, 580
HpyAV	CCTTC	2 cut(s)	335, 493
HpyCH4III	ACNGT	1 cut(s)	654
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	4 cut(s)	137, 290, 397, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 394
HpyF3I	CTNAG	4 cut(s)	114, 183, 442, 600
HpySE526I	ACGT	1 cut(s)	296
Hsp92II	CATG	1 cut(s)	634
Kzo9I	GATC	2 cut(s)	196, 203
LguI	GCTCTTC	1 cut(s)	657
Lsp1109I	GCAGC	2 cut(s)	65, 375
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	3 cut(s)	108, 236, 312
MaeII	ACGT	1 cut(s)	296
MalI	GATC	2 cut(s)	198, 205
MboI	GATC	2 cut(s)	196, 203
MboII	GAAGA	3 cut(s)	368, 508, 674
MflI	RGATCY	1 cut(s)	203
MluCI	AATT	2 cut(s)	26, 345
MlyI	GAGTC	3 cut(s)	22, 194, 255
MmeI	TCCRAC	1 cut(s)	593
MnlI	CCTC	6 cut(s)	45, 85, 329, 451, 595, 611
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	2 cut(s)	8, 299
MspA1I	CMGCKG	2 cut(s)	56, 388
MspI	CCGG	1 cut(s)	642
MspR9I	CCNGG	1 cut(s)	642
Mva1269I	GAATGC	1 cut(s)	411
MwoI	GCNNNNNNNGC	2 cut(s)	39, 394
NciI	CCSGG	1 cut(s)	642
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	2 cut(s)	196, 203
NlaIII	CATG	1 cut(s)	634
NspI	RCATGY	1 cut(s)	634
NspV	TTCGAA	1 cut(s)	547
PciSI	GCTCTTC	1 cut(s)	657
PctI	GAATGC	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	360
PflMI	CCANNNNNTGG	1 cut(s)	391
PkrI	GCNGC	3 cut(s)	44, 55, 390
PleI	GAGTC	3 cut(s)	21, 193, 255
PpsI	GAGTC	3 cut(s)	21, 193, 255
PpuMI	RGGWCCY	1 cut(s)	596
Psp5II	RGGWCCY	1 cut(s)	596
PspPI	GGNCC	1 cut(s)	596
PspPPI	RGGWCCY	1 cut(s)	596
PstNI	CAGNNNCTG	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	203
PvuII	CAGCTG	2 cut(s)	56, 388
SapI	GCTCTTC	1 cut(s)	657
SaqAI	TTAA	2 cut(s)	8, 299
SatI	GCNGC	3 cut(s)	43, 54, 389
Sau3AI	GATC	2 cut(s)	196, 203
Sau96I	GGNCC	1 cut(s)	596
SchI	GAGTC	3 cut(s)	22, 194, 255
ScrFI	CCNGG	1 cut(s)	642
SfaNI	GCATC	1 cut(s)	547
SfcI	CTRYAG	1 cut(s)	591
SfuI	TTCGAA	1 cut(s)	547
SinI	GGWCC	1 cut(s)	596
Sse9I	AATT	2 cut(s)	26, 345
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	3 cut(s)	108, 236, 312
StyD4I	CCNGG	1 cut(s)	640
StyI	CCWWGG	3 cut(s)	192, 311, 453
TaaI	ACNGT	1 cut(s)	654
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	1 cut(s)	547
TasI	AATT	2 cut(s)	26, 345
TauI	GCSGC	1 cut(s)	45
Tru1I	TTAA	2 cut(s)	8, 299
Tru9I	TTAA	2 cut(s)	8, 299
TscAI	CASTG	2 cut(s)	287, 657
TseI	GCWGC	2 cut(s)	53, 388
TspGWI	ACGGA	1 cut(s)	564
TspRI	CASTG	2 cut(s)	287, 657
Van91I	CCANNNNNTGG	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	596
XceI	RCATGY	1 cut(s)	634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XmaJI	CCTAGG	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	3 cut(s)	108, 236, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.