Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0020454

Physical Location & Seq

Genomic Coordinates Reverse (-)

21992106 .. 21993766

Gene Structure 1661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG225200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCCTTAAGGAGTCCGTGCTGGCAATTTCGCCCTCATCGCCGCCAAGAAGCAGCTGGAATGTCATTGCCTGATAATCTTTCTGTTGTTGGAGTTCTCCATCAACCTAGTTCTCAGGGAAACAGACTGCTGATTGCATATGAGAATGACAGCAAACAGGTGGAGAAAGAGATAAGCTCTCTTTGTTTGGTATGCGATAATGGGTCAAGTCTTGCTGTTGGCTATGTAGATGGTGATATAATGTTTTGGGATATATCAACTGCTGAGTCTACCAAGGATCATAGATCTAAAAAGTTAGCTAACAATGTTGTGAAGCTAGAGTTATCATCAGATGACAAGAGACTCCCTGTCATAGTTTTACACTGGTCTGCAAATTGGTTAAGTCATCATCCTAGGGGCCAACTCTTTGTTTATGGAGGTGAAGGAATTGGGTCTGAAGAAGTTCTCACGATATGGTTTTACTTCCAGCTGCTGGTGCAATGGAGAATGGTGACACATTGCTATTCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0002792 GO:0002793 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0023051 GO:0023057 GO:0030234 GO:0030695 GO:0031267 GO:0032879 GO:0032880 GO:0033500 GO:0042592 GO:0042593 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0046676 GO:0046883 GO:0046888 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048878 GO:0050708 GO:0050709 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051020 GO:0051046 GO:0051047 GO:0051048 GO:0051049 GO:0051050 GO:0051051 GO:0051222 GO:0051223 GO:0051224 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0090276 GO:0090278 GO:0098772 GO:1903530 GO:1903531 GO:1903532 GO:1904950 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 Synaptobrevin

Protein Analysis

170

Amino Acids

19.29

Weight (kDa)

6.36

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020454)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c22g0500601 RchiOBHm_Chr7g0206651
rosa_multiflora	Rmu_co7997612.1_g000001
rosa_samantha	Rh2AG219000 Rh2CG561800 Rh2DG225200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	472
AccI	GTMKAC	1 cut(s)	269
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	456
AfiI	CCNNNNNNNGG	1 cut(s)	472
AflII	CTTAAG	1 cut(s)	7
AhdI	GACNNNNNGTC	1 cut(s)	347
AluBI	AGCT	5 cut(s)	56, 177, 299, 316, 469
AluI	AGCT	5 cut(s)	56, 177, 299, 316, 469
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	1 cut(s)	285
AlwNI	CAGNNNCTG	1 cut(s)	472
AoxI	GGCC	2 cut(s)	3, 397
ApeKI	GCWGC	2 cut(s)	53, 469
Asp700I	GAANNNNTTC	1 cut(s)	441
AspA2I	CCTAGG	1 cut(s)	392
AspS9I	GGNCC	1 cut(s)	397
AsuHPI	GGTGA	3 cut(s)	245, 431, 502
AvrII	CCTAGG	1 cut(s)	392
BbvI	GCAGC	2 cut(s)	65, 456
BccI	CCATC	2 cut(s)	108, 224
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	3 cut(s)	108, 317, 393
BfrI	CTTAAG	1 cut(s)	7
BglII	AGATCT	1 cut(s)	284
BisI	GCNGC	3 cut(s)	43, 54, 470
BlnI	CCTAGG	1 cut(s)	392
BlsI	GCNGC	3 cut(s)	44, 55, 471
BmeRI	GACNNNNNGTC	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	1 cut(s)	398
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
BsaJI	CCNNGG	2 cut(s)	273, 392
Bsc4I	CCNNNNNNNGG	1 cut(s)	472
Bse1I	ACTGG	1 cut(s)	368
Bse3DI	GCAATG	3 cut(s)	65, 485, 496
BseDI	CCNNGG	2 cut(s)	273, 392
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	1 cut(s)	472
BseMI	GCAATG	3 cut(s)	65, 485, 496
BseMII	CTCAG	2 cut(s)	128, 255
BseNI	ACTGG	1 cut(s)	368
BseXI	GCAGC	2 cut(s)	65, 456
BshFI	GGCC	2 cut(s)	5, 399
BslI	CCNNNNNNNGG	1 cut(s)	472
BsmAI	GTCTC	1 cut(s)	334
BsnI	GGCC	2 cut(s)	5, 399
Bsp143I	GATC	2 cut(s)	277, 284
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	2 cut(s)	5, 399
BspCNI	CTCAG	2 cut(s)	127, 256
BspLI	GGNNCC	1 cut(s)	398
BspPI	GGATC	1 cut(s)	285
BspTI	CTTAAG	1 cut(s)	7
BsrDI	GCAATG	3 cut(s)	65, 485, 496
BsrI	ACTGG	1 cut(s)	368
BssECI	CCNNGG	2 cut(s)	273, 392
BssMI	GATC	2 cut(s)	277, 284
BssT1I	CCWWGG	2 cut(s)	273, 392
BstAFI	CTTAAG	1 cut(s)	7
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	2 cut(s)	114, 264
BstF5I	GGATG	1 cut(s)	388
BstKTI	GATC	2 cut(s)	280, 287
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	2 cut(s)	277, 284
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 475
BstV1I	GCAGC	2 cut(s)	65, 456
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
BsuRI	GGCC	2 cut(s)	5, 399
BtgZI	GCGATG	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	23
CaiI	CAGNNNCTG	1 cut(s)	472
Cfr13I	GGNCC	1 cut(s)	397
CviJI	RGCY	8 cut(s)	5, 56, 177, 222, 299, 316, 399, 469
CviKI_1	RGCY	8 cut(s)	5, 56, 177, 222, 299, 316, 399, 469
DdeI	CTNAG	2 cut(s)	114, 264
DpnI	GATC	2 cut(s)	279, 286
DpnII	GATC	2 cut(s)	277, 284
DriI	GACNNNNNGTC	1 cut(s)	347
Eam1105I	GACNNNNNGTC	1 cut(s)	347
Eco130I	CCWWGG	2 cut(s)	273, 392
Eco57I	CTGAAG	1 cut(s)	456
EcoT14I	CCWWGG	2 cut(s)	273, 392
ErhI	CCWWGG	2 cut(s)	273, 392
FauNDI	CATATG	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	269
Fnu4HI	GCNGC	3 cut(s)	43, 54, 470
FokI	GGATG	1 cut(s)	375
Fsp4HI	GCNGC	3 cut(s)	43, 54, 470
FspBI	CTAG	3 cut(s)	108, 317, 393
GluI	GCNGC	3 cut(s)	43, 54, 470
HaeIII	GGCC	2 cut(s)	5, 399
HinfI	GANTC	3 cut(s)	13, 266, 342
HphI	GGTGA	3 cut(s)	245, 431, 502
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	2 cut(s)	331, 436
Hpy188III	TCNNGA	1 cut(s)	448
Hpy8I	GTNNAC	1 cut(s)	270
HpyAV	CCTTC	1 cut(s)	416
HpyCH4V	TGCA	3 cut(s)	137, 371, 478
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 475
HpyF3I	CTNAG	2 cut(s)	114, 264
Kzo9I	GATC	2 cut(s)	277, 284
LpnPI	CCDG	9 cut(s)	7, 42, 84, 101, 143, 349, 360, 458, 479
Lsp1109I	GCAGC	2 cut(s)	65, 456
MaeI	CTAG	3 cut(s)	108, 317, 393
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	2 cut(s)	279, 286
MboI	GATC	2 cut(s)	277, 284
MboII	GAAGA	1 cut(s)	449
MflI	RGATCY	1 cut(s)	284
MluCI	AATT	3 cut(s)	26, 373, 426
MlyI	GAGTC	3 cut(s)	22, 275, 336
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	2 cut(s)	45, 410
MroXI	GAANNNNTTC	1 cut(s)	441
MseI	TTAA	2 cut(s)	8, 380
MspA1I	CMGCKG	2 cut(s)	56, 469
MspCI	CTTAAG	1 cut(s)	7
MwoI	GCNNNNNNNGC	2 cut(s)	39, 475
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	2 cut(s)	277, 284
NlaIV	GGNNCC	1 cut(s)	398
NmuCI	GTSAC	1 cut(s)	490
PdmI	GAANNNNTTC	1 cut(s)	441
PflMI	CCANNNNNTGG	1 cut(s)	472
PkrI	GCNGC	3 cut(s)	44, 55, 471
PleI	GAGTC	3 cut(s)	21, 274, 336
PpsI	GAGTC	3 cut(s)	21, 274, 336
PspN4I	GGNNCC	1 cut(s)	398
PspPI	GGNCC	1 cut(s)	397
PstNI	CAGNNNCTG	1 cut(s)	472
PsuI	RGATCY	1 cut(s)	284
PvuII	CAGCTG	2 cut(s)	56, 469
SaqAI	TTAA	2 cut(s)	8, 380
SatI	GCNGC	3 cut(s)	43, 54, 470
Sau3AI	GATC	2 cut(s)	277, 284
Sau96I	GGNCC	1 cut(s)	397
SchI	GAGTC	3 cut(s)	22, 275, 336
SetI	ASST	8 cut(s)	58, 109, 162, 179, 301, 318, 421, 471
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	3 cut(s)	26, 373, 426
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	3 cut(s)	108, 317, 393
StyI	CCWWGG	2 cut(s)	273, 392
TasI	AATT	3 cut(s)	26, 373, 426
TauI	GCSGC	1 cut(s)	45
Tru1I	TTAA	2 cut(s)	8, 380
Tru9I	TTAA	2 cut(s)	8, 380
TscAI	CASTG	1 cut(s)	368
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	2 cut(s)	53, 469
Tsp45I	GTSAC	1 cut(s)	490
TspGWI	ACGGA	1 cut(s)	6
TspRI	CASTG	1 cut(s)	368
Van91I	CCANNNNNTGG	1 cut(s)	472
Vha464I	CTTAAG	1 cut(s)	7
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XmaJI	CCTAGG	1 cut(s)	392
XmiI	GTMKAC	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	441
XspI	CTAG	3 cut(s)	108, 317, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.