Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0020454

Physical Location & Seq

Genomic Coordinates Reverse (-)

22676551 .. 22678211

Gene Structure 1661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG219000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCCTTAAGGAGTCCGTGCTGGCAATTTCGCCCTCATCGCCGCCAAGAAGCAGCTGGAATGTCATTGCCTGATAATCTTTCTGTTGTTGGAGTTCTCCATCAACCTAGTTCTCAGGGAAACAGACTGCTGATTGCATATGAGAATGGCATAAGAACTGAGCTGACTGATGCTACATCAGACAGCAAACAGGTGGAGAAAGAGATAAGCTCTCTTTGTTTGGTATGCGATAATGGGTCAAGTCTTGCTGTTGGCTATGTAGATGGTGATATAATGTTTTGGGATATATCAACTGCTGAGTCTACCAAGGATCATAGATCTAAAAAGTTAGCTAACAATGTTGTGAAGCTAGAGTTATCATCAGATGACAAGAGACTCCCTGTCATAGTTTTACACTGGTCTGCAAATTGGTTAAGTCATCATCCTAGGGGCCAACTCTTTGTTTATGGAGGTGAAGGAATTGGGTCTGAAGAAGTTCTCACGATATGGTTTTACTTCCAGCTGCTGGTGCAATGGAGAATGGTGACACATTGCTATTCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0002792 GO:0002793 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0023051 GO:0023057 GO:0030234 GO:0030695 GO:0031267 GO:0032879 GO:0032880 GO:0033500 GO:0042592 GO:0042593 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0046676 GO:0046883 GO:0046888 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048878 GO:0050708 GO:0050709 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051020 GO:0051046 GO:0051047 GO:0051048 GO:0051049 GO:0051050 GO:0051051 GO:0051222 GO:0051223 GO:0051224 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0090276 GO:0090278 GO:0098772 GO:1903530 GO:1903531 GO:1903532 GO:1904950 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 Synaptobrevin

Protein Analysis

181

Amino Acids

20.43

Weight (kDa)

6.14

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020454)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c22g0500601 RchiOBHm_Chr7g0206651
rosa_multiflora	Rmu_co7997612.1_g000001
rosa_samantha	Rh2AG219000 Rh2CG561800 Rh2DG225200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	505
AccI	GTMKAC	1 cut(s)	302
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	1 cut(s)	318
AcuI	CTGAAG	1 cut(s)	489
AfiI	CCNNNNNNNGG	1 cut(s)	505
AflII	CTTAAG	1 cut(s)	7
AhdI	GACNNNNNGTC	1 cut(s)	380
AluBI	AGCT	6 cut(s)	56, 163, 210, 332, 349, 502
AluI	AGCT	6 cut(s)	56, 163, 210, 332, 349, 502
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	318
AlwNI	CAGNNNCTG	1 cut(s)	505
AoxI	GGCC	2 cut(s)	3, 430
ApeKI	GCWGC	2 cut(s)	53, 502
Asp700I	GAANNNNTTC	1 cut(s)	474
AspA2I	CCTAGG	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	430
AsuHPI	GGTGA	3 cut(s)	278, 464, 535
AvrII	CCTAGG	1 cut(s)	425
BbvI	GCAGC	2 cut(s)	65, 489
BccI	CCATC	2 cut(s)	108, 257
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	3 cut(s)	108, 350, 426
BfrI	CTTAAG	1 cut(s)	7
BglII	AGATCT	1 cut(s)	317
BisI	GCNGC	3 cut(s)	43, 54, 503
BlnI	CCTAGG	1 cut(s)	425
BlsI	GCNGC	3 cut(s)	44, 55, 504
BmeRI	GACNNNNNGTC	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	1 cut(s)	431
BmsI	GCATC	1 cut(s)	160
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
BsaJI	CCNNGG	2 cut(s)	306, 425
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
Bse1I	ACTGG	1 cut(s)	401
Bse3DI	GCAATG	3 cut(s)	65, 518, 529
BseDI	CCNNGG	2 cut(s)	306, 425
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseMI	GCAATG	3 cut(s)	65, 518, 529
BseMII	CTCAG	3 cut(s)	128, 150, 288
BseNI	ACTGG	1 cut(s)	401
BseXI	GCAGC	2 cut(s)	65, 489
BshFI	GGCC	2 cut(s)	5, 432
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmAI	GTCTC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	5, 432
Bsp143I	GATC	2 cut(s)	310, 317
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	2 cut(s)	5, 432
BspCNI	CTCAG	3 cut(s)	127, 151, 289
BspLI	GGNNCC	1 cut(s)	431
BspPI	GGATC	1 cut(s)	318
BspTI	CTTAAG	1 cut(s)	7
BsrDI	GCAATG	3 cut(s)	65, 518, 529
BsrI	ACTGG	1 cut(s)	401
BssECI	CCNNGG	2 cut(s)	306, 425
BssMI	GATC	2 cut(s)	310, 317
BssT1I	CCWWGG	2 cut(s)	306, 425
BstAFI	CTTAAG	1 cut(s)	7
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	3 cut(s)	114, 159, 297
BstF5I	GGATG	1 cut(s)	421
BstKTI	GATC	2 cut(s)	313, 320
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	2 cut(s)	310, 317
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 508
BstV1I	GCAGC	2 cut(s)	65, 489
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	5, 432
BtgZI	GCGATG	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	394
Cac8I	GCNNGC	1 cut(s)	23
CaiI	CAGNNNCTG	1 cut(s)	505
Cfr13I	GGNCC	1 cut(s)	430
CviJI	RGCY	9 cut(s)	5, 56, 163, 210, 255, 332, 349, 432, 502
CviKI_1	RGCY	9 cut(s)	5, 56, 163, 210, 255, 332, 349, 432, 502
DdeI	CTNAG	3 cut(s)	114, 159, 297
DpnI	GATC	2 cut(s)	312, 319
DpnII	GATC	2 cut(s)	310, 317
DriI	GACNNNNNGTC	1 cut(s)	380
Eam1105I	GACNNNNNGTC	1 cut(s)	380
Eco130I	CCWWGG	2 cut(s)	306, 425
Eco57I	CTGAAG	1 cut(s)	489
EcoT14I	CCWWGG	2 cut(s)	306, 425
ErhI	CCWWGG	2 cut(s)	306, 425
FauNDI	CATATG	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	302
Fnu4HI	GCNGC	3 cut(s)	43, 54, 503
FokI	GGATG	1 cut(s)	408
Fsp4HI	GCNGC	3 cut(s)	43, 54, 503
FspBI	CTAG	3 cut(s)	108, 350, 426
GluI	GCNGC	3 cut(s)	43, 54, 503
HaeIII	GGCC	2 cut(s)	5, 432
HinfI	GANTC	3 cut(s)	13, 299, 375
HphI	GGTGA	3 cut(s)	278, 464, 535
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	3 cut(s)	181, 364, 469
Hpy188III	TCNNGA	1 cut(s)	481
Hpy8I	GTNNAC	1 cut(s)	303
HpyAV	CCTTC	1 cut(s)	449
HpyCH4V	TGCA	3 cut(s)	137, 404, 511
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 508
HpyF3I	CTNAG	3 cut(s)	114, 159, 297
Kzo9I	GATC	2 cut(s)	310, 317
LpnPI	CCDG	9 cut(s)	7, 42, 84, 101, 176, 382, 393, 491, 512
Lsp1109I	GCAGC	2 cut(s)	65, 489
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	3 cut(s)	108, 350, 426
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	2 cut(s)	312, 319
MboI	GATC	2 cut(s)	310, 317
MboII	GAAGA	1 cut(s)	482
MflI	RGATCY	1 cut(s)	317
MluCI	AATT	3 cut(s)	26, 406, 459
MlyI	GAGTC	3 cut(s)	22, 308, 369
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	2 cut(s)	45, 443
MroXI	GAANNNNTTC	1 cut(s)	474
MseI	TTAA	2 cut(s)	8, 413
MspA1I	CMGCKG	2 cut(s)	56, 502
MspCI	CTTAAG	1 cut(s)	7
MwoI	GCNNNNNNNGC	2 cut(s)	39, 508
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	2 cut(s)	310, 317
NlaIV	GGNNCC	1 cut(s)	431
NmuCI	GTSAC	1 cut(s)	523
PdmI	GAANNNNTTC	1 cut(s)	474
PflMI	CCANNNNNTGG	1 cut(s)	505
PkrI	GCNGC	3 cut(s)	44, 55, 504
PleI	GAGTC	3 cut(s)	21, 307, 369
PpsI	GAGTC	3 cut(s)	21, 307, 369
PspN4I	GGNNCC	1 cut(s)	431
PspPI	GGNCC	1 cut(s)	430
PstNI	CAGNNNCTG	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	317
PvuII	CAGCTG	2 cut(s)	56, 502
SaqAI	TTAA	2 cut(s)	8, 413
SatI	GCNGC	3 cut(s)	43, 54, 503
Sau3AI	GATC	2 cut(s)	310, 317
Sau96I	GGNCC	1 cut(s)	430
SchI	GAGTC	3 cut(s)	22, 308, 369
SetI	ASST	9 cut(s)	58, 109, 165, 195, 212, 334, 351, 454, 504
SfaNI	GCATC	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	3 cut(s)	26, 406, 459
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	3 cut(s)	108, 350, 426
StyI	CCWWGG	2 cut(s)	306, 425
TasI	AATT	3 cut(s)	26, 406, 459
TauI	GCSGC	1 cut(s)	45
Tru1I	TTAA	2 cut(s)	8, 413
Tru9I	TTAA	2 cut(s)	8, 413
TscAI	CASTG	1 cut(s)	401
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	2 cut(s)	53, 502
Tsp45I	GTSAC	1 cut(s)	523
TspGWI	ACGGA	1 cut(s)	6
TspRI	CASTG	1 cut(s)	401
Van91I	CCANNNNNTGG	1 cut(s)	505
Vha464I	CTTAAG	1 cut(s)	7
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XmaJI	CCTAGG	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	474
XspI	CTAG	3 cut(s)	108, 350, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.