RchiOBHm_Chr0c16g0499791

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0019281
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 321 bp
ATGGTTACGCTTGAATATCTCAATCTCACCAATAACCTATTCCAAGGGCCAATGCTATATAACTTTCCCAAGCTTAAACACCTTCATTTGTCACAAAACAACTTCAGAGGTACAATTCCTGAAGATATTGGCTTCATATCTGGTCTGCAACGGGTTGACCTGTTTAACAATTCCCTTGAAAGCAAAATCCCATCCTCTGTAGGCCAACTCAGGGAGCTTCAGCACCTTGACCTTCGCGAGAATTCCTTGAACTCTTCAATCCCTTCTGACCTTGGTCTTTGTACAAACCTCGATCTCTTATTTGGCCTTGGCTGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

106

Amino Acids

11.93

Weight (kDa)

5.21

Isoelectric Point (pI)

24.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 19 - 100 2.8e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019281)

Species Orthologous Gene IDs
malus_domestica MD04G1157000.v1.1
pyrus_communis pycom04g10550
rosa_chinensis RchiOBHm_Chr0c16g0499791 RchiOBHm_Chr0c16g0499851
rosa_multiflora Rmu_sc0005297.1_g000007 Rmu_sc0006522.1_g000025
rosa_samantha Rh3AG121900 Rh6BG302000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 237
AcsI RAATTY 1 cut(s) 241
AcuI CTGAAG 3 cut(s) 88, 141, 203
AfaI GTAC 2 cut(s) 112, 283
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 4 cut(s) 14, 179, 250, 258
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AluBI AGCT 2 cut(s) 73, 217
AluI AGCT 2 cut(s) 73, 217
AoxI GGCC 3 cut(s) 47, 202, 304
ApoI RAATTY 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 19
BccI CCATC 1 cut(s) 199
BfmI CTRYAG 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 47
BoxI GACNNNNGTC 1 cut(s) 273
BsaJI CCNNGG 3 cut(s) 43, 271, 307
Bsc4I CCNNNNNNNGG 1 cut(s) 211
BseDI CCNNGG 3 cut(s) 43, 271, 307
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMII CTCAG 1 cut(s) 223
Bsh1236I CGCG 1 cut(s) 237
BshFI GGCC 3 cut(s) 49, 204, 306
BslI CCNNNNNNNGG 1 cut(s) 211
BsnI GGCC 3 cut(s) 49, 204, 306
Bsp1407I TGTACA 1 cut(s) 281
Bsp143I GATC 1 cut(s) 292
Bsp68I TCGCGA 1 cut(s) 237
BspANI GGCC 3 cut(s) 49, 204, 306
BspCNI CTCAG 1 cut(s) 222
BspFNI CGCG 1 cut(s) 237
BsrGI TGTACA 1 cut(s) 281
BssECI CCNNGG 3 cut(s) 43, 271, 307
BssMI GATC 1 cut(s) 292
BssT1I CCWWGG 3 cut(s) 43, 271, 307
Bst6I CTCTTC 1 cut(s) 259
BstAUI TGTACA 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 191
BstFNI CGCG 1 cut(s) 237
BstKTI GATC 1 cut(s) 295
BstMBI GATC 1 cut(s) 292
BstPAI GACNNNNGTC 1 cut(s) 273
BstSFI CTRYAG 1 cut(s) 198
BstUI CGCG 1 cut(s) 237
BsuRI GGCC 3 cut(s) 49, 204, 306
BtsCI GGATG 1 cut(s) 191
BtuMI TCGCGA 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 47
Csp6I GTAC 2 cut(s) 111, 282
CviJI RGCY 7 cut(s) 49, 73, 132, 204, 217, 306, 312
CviKI_1 RGCY 7 cut(s) 49, 73, 132, 204, 217, 306, 312
CviQI GTAC 2 cut(s) 111, 282
DdeI CTNAG 1 cut(s) 209
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
Eco130I CCWWGG 3 cut(s) 43, 271, 307
Eco57I CTGAAG 3 cut(s) 88, 141, 203
EcoRI GAATTC 1 cut(s) 241
EcoT14I CCWWGG 3 cut(s) 43, 271, 307
ErhI CCWWGG 3 cut(s) 43, 271, 307
FaiI YATR 3 cut(s) 58, 60, 137
FokI GGATG 1 cut(s) 178
HaeIII GGCC 3 cut(s) 49, 204, 306
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HindIII AAGCTT 1 cut(s) 71
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 107, 268
Hpy188III TCNNGA 2 cut(s) 119, 236
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 3 cut(s) 92, 242, 273
HpyCH4V TGCA 1 cut(s) 148
HpyF3I CTNAG 1 cut(s) 209
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 4 cut(s) 126, 132, 173, 196
MaeIII GTNAC 2 cut(s) 4, 90
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 2 cut(s) 134, 246
MluCI AATT 3 cut(s) 114, 169, 241
MnlI CCTC 3 cut(s) 101, 205, 299
MseI TTAA 2 cut(s) 75, 165
MvnI CGCG 1 cut(s) 237
NdeII GATC 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 90
NruI TCGCGA 1 cut(s) 237
PshAI GACNNNNGTC 1 cut(s) 273
PspPI GGNCC 1 cut(s) 47
RruI TCGCGA 1 cut(s) 237
RsaI GTAC 2 cut(s) 112, 283
RsaNI GTAC 2 cut(s) 111, 282
SaqAI TTAA 2 cut(s) 75, 165
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 1 cut(s) 47
SfcI CTRYAG 1 cut(s) 198
Sse9I AATT 3 cut(s) 114, 169, 241
StyI CCWWGG 3 cut(s) 43, 271, 307
TaqI TCGA 1 cut(s) 291
TasI AATT 3 cut(s) 114, 169, 241
TatI WGTACW 1 cut(s) 281
Tru1I TTAA 2 cut(s) 75, 165
Tru9I TTAA 2 cut(s) 75, 165
TseFI GTSAC 1 cut(s) 90
Tsp45I GTSAC 1 cut(s) 90
TspDTI ATGAA 2 cut(s) 74, 124
XapI RAATTY 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.