Rh3AG121900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0019281
Physical Location & Seq
Reverse (-)
10452268 .. 10458110
5843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG121900.1

Sequence Viewer

Length: 528 bp
ATGGGTCGTCTTCTACGCCTGCAACTGCTTCATCTGTCTCTCAATTCCTTCAGTGGGAAATTTCCATCTAATATATCTCACTGCACACAACTAAGAGTGCTCAATGTTATTTCCAATGAGCTTACTGGGTCGATCCCTGATCAACTTGGTTCATTATTGAAGTTAACTCATCTATGGCTTCAGGGTAACCATCTTACTGGAAAAATCCCAGAGTGGATAGGAAACTTTTCATCTTTGTACAGTATAGCTCTTGGCGACAACAATTTACAGGGAAGGATACCCAATCAGCTCGGGCGCCTAACAAGCCTGGGAAACTTCCTAGTTTGGAGCAATAATTTGTCTGCTATATTTGCTTGTAATCTTCACAACCAACAAAGCAATAAAAACAATAGGAGACTGAGTAGACGACAAAAACACAAAAATGGGGTTCTTGTACTTTTGTACTTTGTAGCAGGGCTAAAACGTCGCCGTTTGGACTTGATCAAGAAAAGTAAAGGCAAGCTAAAACGACACCGTAGTATAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.87

Weight (kDa)

11.51

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 2 - 106 9.9e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019281)

Species Orthologous Gene IDs
malus_domestica MD04G1157000.v1.1
pyrus_communis pycom04g10550
rosa_chinensis RchiOBHm_Chr0c16g0499791 RchiOBHm_Chr0c16g0499851
rosa_multiflora Rmu_sc0005297.1_g000007 Rmu_sc0006522.1_g000025
rosa_samantha Rh3AG121900 Rh6BG302000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 294
AccI GTMKAC 1 cut(s) 403
AclWI GGATC 1 cut(s) 127
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 2 cut(s) 34, 164
AcyI GRCGYC 1 cut(s) 295
AfaI GTAC 3 cut(s) 239, 435, 443
AfiI CCNNNNNNNGG 1 cut(s) 54
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 4 cut(s) 121, 248, 289, 502
AluI AGCT 4 cut(s) 121, 248, 289, 502
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 2 cut(s) 42, 388
AlwI GGATC 1 cut(s) 127
Ama87I CYCGRG 1 cut(s) 290
ApoI RAATTY 1 cut(s) 59
Asp700I GAANNNNTTC 1 cut(s) 226
AspLEI GCGC 1 cut(s) 297
AvaI CYCGRG 1 cut(s) 290
BanI GGYRCC 1 cut(s) 294
BbsI GAAGAC 1 cut(s) 2
Bbv12I GWGCWC 1 cut(s) 102
BccI CCATC 2 cut(s) 73, 198
BceAI ACGGC 1 cut(s) 453
BciT130I CCWGG 1 cut(s) 308
BciVI GTATCC 1 cut(s) 270
BclI TGATCA 2 cut(s) 139, 480
BcoDI GTCTC 2 cut(s) 42, 388
BfaI CTAG 1 cut(s) 320
BfoI RGCGCY 1 cut(s) 298
BfuI GTATCC 1 cut(s) 270
Bme1390I CCNGG 1 cut(s) 308
BmeT110I CYCGRG 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 296
BmrFI CCNGG 1 cut(s) 308
BmrI ACTGGG 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 2
BsaHI GRCGYC 1 cut(s) 295
BsaJI CCNNGG 1 cut(s) 307
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
Bsc4I CCNNNNNNNGG 1 cut(s) 54
Bse1I ACTGG 2 cut(s) 130, 202
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 389
BseNI ACTGG 2 cut(s) 130, 202
BsgI GTGCAG 1 cut(s) 67
BshNI GGYRCC 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 290
BslI CCNNNNNNNGG 1 cut(s) 54
BsmAI GTCTC 2 cut(s) 42, 388
BsoBI CYCGRG 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 102
Bsp1407I TGTACA 1 cut(s) 237
Bsp143I GATC 3 cut(s) 132, 139, 480
BspCNI CTCAG 1 cut(s) 390
BspLI GGNNCC 1 cut(s) 296
BspPI GGATC 1 cut(s) 127
BspT107I GGYRCC 1 cut(s) 294
BsrGI TGTACA 1 cut(s) 237
BsrI ACTGG 2 cut(s) 130, 202
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 3 cut(s) 132, 139, 480
BssNI GRCGYC 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 2 cut(s) 242, 515
BstACI GRCGYC 1 cut(s) 295
BstAUI TGTACA 1 cut(s) 237
BstC8I GCNNGC 2 cut(s) 20, 500
BstDEI CTNAG 2 cut(s) 92, 398
BstEII GGTNACC 1 cut(s) 185
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 3 cut(s) 135, 142, 483
BstMAI GTCTC 2 cut(s) 42, 388
BstMBI GATC 3 cut(s) 132, 139, 480
BstMWI GCNNNNNNNGC 2 cut(s) 303, 350
BstNI CCWGG 1 cut(s) 308
BstPI GGTNACC 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 306
BstV2I GAAGAC 1 cut(s) 2
BstXI CCANNNNNNTGG 1 cut(s) 197
BsuI GTATCC 1 cut(s) 270
BtsI GCAGTG 1 cut(s) 79
BtsIMutI CAGTG 2 cut(s) 58, 79
Cac8I GCNNGC 2 cut(s) 20, 500
CfoI GCGC 1 cut(s) 297
Csp6I GTAC 3 cut(s) 238, 434, 442
CviJI RGCY 7 cut(s) 121, 178, 248, 289, 306, 457, 502
CviKI_1 RGCY 7 cut(s) 121, 178, 248, 289, 306, 457, 502
CviQI GTAC 3 cut(s) 238, 434, 442
DdeI CTNAG 2 cut(s) 92, 398
DinI GGCGCC 1 cut(s) 296
DpnI GATC 3 cut(s) 134, 141, 482
DpnII GATC 3 cut(s) 132, 139, 480
Eco57I CTGAAG 2 cut(s) 34, 164
Eco88I CYCGRG 1 cut(s) 290
Eco91I GGTNACC 1 cut(s) 185
EcoO65I GGTNACC 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 306
EgeI GGCGCC 1 cut(s) 296
EheI GGCGCC 1 cut(s) 296
FaiI YATR 5 cut(s) 74, 175, 245, 347, 521
FbaI TGATCA 2 cut(s) 139, 480
FblI GTMKAC 1 cut(s) 403
FspBI CTAG 1 cut(s) 320
GlaI GCGC 1 cut(s) 296
HaeII RGCGCY 1 cut(s) 298
HhaI GCGC 1 cut(s) 297
Hin1I GRCGYC 1 cut(s) 295
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HpaI GTTAAC 1 cut(s) 165
Hpy166II GTNNAC 2 cut(s) 165, 404
Hpy188III TCNNGA 1 cut(s) 484
Hpy8I GTNNAC 2 cut(s) 165, 404
Hpy99I CGWCG 1 cut(s) 468
HpyAV CCTTC 2 cut(s) 58, 267
HpyCH4III ACNGT 2 cut(s) 242, 515
HpyCH4IV ACGT 1 cut(s) 463
HpyCH4V TGCA 2 cut(s) 22, 84
HpyF10VI GCNNNNNNNGC 2 cut(s) 303, 350
HpyF3I CTNAG 2 cut(s) 92, 398
HpySE526I ACGT 1 cut(s) 463
Hsp92I GRCGYC 1 cut(s) 295
HspAI GCGC 1 cut(s) 295
KasI GGCGCC 1 cut(s) 294
Ksp22I TGATCA 2 cut(s) 139, 480
KspAI GTTAAC 1 cut(s) 165
Kzo9I GATC 3 cut(s) 132, 139, 480
LmnI GCTCC 1 cut(s) 327
MaeI CTAG 1 cut(s) 320
MaeII ACGT 1 cut(s) 463
MaeIII GTNAC 1 cut(s) 185
MalI GATC 3 cut(s) 134, 141, 482
MboI GATC 3 cut(s) 132, 139, 480
MboII GAAGA 1 cut(s) 353
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 4 cut(s) 43, 59, 262, 334
Mly113I GGCGCC 1 cut(s) 295
MroXI GAANNNNTTC 1 cut(s) 226
MseI TTAA 1 cut(s) 164
MslI CAYNNNNRTG 1 cut(s) 420
MspR9I CCNGG 1 cut(s) 308
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 2 cut(s) 303, 350
NarI GGCGCC 1 cut(s) 295
NdeII GATC 3 cut(s) 132, 139, 480
NlaIV GGNNCC 1 cut(s) 296
PdmI GAANNNNTTC 1 cut(s) 226
PluTI GGCGCC 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 306
PspEI GGTNACC 1 cut(s) 185
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 296
RsaI GTAC 3 cut(s) 239, 435, 443
RsaNI GTAC 3 cut(s) 238, 434, 442
RseI CAYNNNNRTG 1 cut(s) 420
SaqAI TTAA 1 cut(s) 164
Sau3AI GATC 3 cut(s) 132, 139, 480
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 1 cut(s) 102
SetI ASST 5 cut(s) 123, 250, 291, 466, 504
SfoI GGCGCC 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 420
Sse9I AATT 4 cut(s) 43, 59, 262, 334
SspDI GGCGCC 1 cut(s) 294
SspMI CTAG 1 cut(s) 320
StyD4I CCNGG 1 cut(s) 306
TaaI ACNGT 2 cut(s) 242, 515
TaiI ACGT 1 cut(s) 466
TaqI TCGA 1 cut(s) 131
TasI AATT 4 cut(s) 43, 59, 262, 334
TatI WGTACW 3 cut(s) 237, 433, 441
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TscAI CASTG 2 cut(s) 58, 86
TspDTI ATGAA 3 cut(s) 20, 141, 219
TspRI CASTG 2 cut(s) 58, 86
XapI RAATTY 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 403
XmnI GAANNNNTTC 1 cut(s) 226
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.