RchiOBHm_Chr0c11g0499491

U3 small nucleolar RNA-associated protein 6 homolog

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 174 bp
ATGAGAAAGGGACAAGTGTTCTGCTTCTGTTTTGTGGCAGTCCATCTAAGCTTTATTGCTATACCACACCCTGGCTTTGCTCCATATAGGCCCTGCATTGTGTTGGAATCAAACCTCGCATCCAGTCTTGTAAATGCCAGGAAGTTATATTATTCTGCACTTAAAAGCTTATAA

Protein Analysis

57

Amino Acids

6.38

Weight (kDa)

9.57

Isoelectric Point (pI)

11.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0021291)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 172
AccB7I CCANNNNNTGG 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 71
AjnI CCWGG 2 cut(s) 70, 137
AluBI AGCT 2 cut(s) 51, 168
AluI AGCT 2 cut(s) 51, 168
AoxI GGCC 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 90
BccI CCATC 1 cut(s) 51
BciT130I CCWGG 2 cut(s) 72, 139
Bme1390I CCNGG 2 cut(s) 72, 139
BmgT120I GGNCC 1 cut(s) 90
BmrFI CCNGG 2 cut(s) 72, 139
BmsI GCATC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 123
BseBI CCWGG 2 cut(s) 72, 139
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 71
BseNI ACTGG 1 cut(s) 123
BsgI GTGCAG 1 cut(s) 141
BshFI GGCC 1 cut(s) 91
BslFI GGGAC 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 24
BsnI GGCC 1 cut(s) 91
BspANI GGCC 1 cut(s) 91
BsrI ACTGG 1 cut(s) 123
BssECI CCNNGG 1 cut(s) 70
Bst2UI CCWGG 2 cut(s) 72, 139
BstDEI CTNAG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 119
BstNI CCWGG 2 cut(s) 72, 139
BstSCI CCNGG 2 cut(s) 70, 137
BsuRI GGCC 1 cut(s) 91
BtsCI GGATG 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 90
CviJI RGCY 4 cut(s) 51, 75, 91, 168
CviKI_1 RGCY 4 cut(s) 51, 75, 91, 168
DdeI CTNAG 1 cut(s) 47
EcoO109I RGGNCCY 1 cut(s) 90
EcoRII CCWGG 2 cut(s) 70, 137
FaiI YATR 5 cut(s) 62, 85, 87, 148, 172
FaqI GGGAC 1 cut(s) 24
FokI GGATG 1 cut(s) 106
HaeIII GGCC 1 cut(s) 91
HindIII AAGCTT 2 cut(s) 49, 166
HinfI GANTC 1 cut(s) 107
HpyCH4V TGCA 2 cut(s) 96, 158
HpyF3I CTNAG 1 cut(s) 47
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 6 cut(s) 57, 84, 106, 124, 136, 151
LweI GCATC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 1 cut(s) 125
MseI TTAA 1 cut(s) 162
MspR9I CCNGG 2 cut(s) 72, 139
MvaI CCWGG 2 cut(s) 72, 139
PfeI GAWTC 1 cut(s) 107
PflMI CCANNNNNTGG 1 cut(s) 71
PsiI TTATAA 1 cut(s) 172
Psp6I CCWGG 2 cut(s) 70, 137
PspGI CCWGG 2 cut(s) 70, 137
PspPI GGNCC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 162
Sau96I GGNCC 1 cut(s) 90
ScrFI CCNGG 2 cut(s) 72, 139
SetI ASST 3 cut(s) 53, 117, 170
SfaNI GCATC 1 cut(s) 128
SgeI CNNG 9 cut(s) 26, 83, 84, 105, 128, 135, 140, 150, 151
StyD4I CCNGG 2 cut(s) 70, 137
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
Van91I CCANNNNNTGG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.