Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0021291

Physical Location & Seq

Genomic Coordinates Forward (+)

37242988 .. 37244620

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG355600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGCTCCACCAGTATGGGAAATTTTTGAATGGTGTTGTCAATCTTCTAAAACTAGAAAACAAGCCTTCTGGGTTAGCTAGTCCATCTGCTGGTTATATTCCTCTTCTTTTGAGGGCTTACGAAAATGTTAAAACAATGGGGTATATTGATGAGGTTCTTGCTTGTCAGCATATTTCATTTCTTCTGCAACTTGGAAGACTGGAGGAAGCCCAGAAACTGGCAGAAAATCTTTGTTGTGGAATATTTTCAAATTCAATGAAGTTATGGCTATTAAGAGTCTCTGTAGGTATTAGACACTTTACAAGGGATTCCATTTCACCGAGTAAAGCTGACCTACTGTCCATCTTTGAACTTCTTAAAGATGTTTTGACAAGAGTGTCCATATCAGAAGCTGAGAACCTGTGGTTATTGGCCCTTAAATTCTTTGCAAATCAAAAACATTACTTTGACAAGTTGGTTGAGATTTCTGTTAGATCATTGACAAAAGATGGCGGCAATGAACAAGGATTTTCCCTCTCTGCTGCTATTGTGCATTTTGTTCTTCAAAAGGATGGAGTACTACATGCTAGAGAGATGTATAAACGCTTCATCGCTTTACCACACCCTGGACTTGCACTATATAGAGCCTGCATTGAATTGGAATCAAACCTTGCATCCATTAGTGACAAAGATAGCCTCGTCAATGCCAGGAAATTATATGAATCTGCACTTAAAACTTATGACCAAGATTTGAGCTTATGGCGAGATTACTATTTGATGGAGACCAAGATGGGAACATCAGAAACAGCTTCTGCCGTACATTGGCACGCACACAAGATTCTAAAAGACACGACTGCACTTGTTACACCAGATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

U3_assoc_6

Protein Analysis

285

Amino Acids

32.16

Weight (kDa)

7.71

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UTP6_C	PF24892	36 - 274	8e-12	U3 small nucleolar RNA-associated protein 6 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021291)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c11g0499491 RchiOBHm_Chr7g0223961
rosa_samantha	Rh7AG364200 Rh7BG355600 Rh7CG383000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	376
AccB7I	CCANNNNNTGG	3 cut(s)	89, 217, 605
AciI	CCGC	1 cut(s)	492
AcsI	RAATTY	3 cut(s)	20, 250, 419
AfaI	GTAC	2 cut(s)	558, 798
AfiI	CCNNNNNNNGG	4 cut(s)	89, 217, 605, 801
AgsI	TTSAA	6 cut(s)	28, 249, 255, 350, 545, 635
AhdI	GACNNNNNGTC	1 cut(s)	337
AjnI	CCWGG	2 cut(s)	604, 686
AluBI	AGCT	5 cut(s)	77, 329, 392, 735, 788
AluI	AGCT	5 cut(s)	77, 329, 392, 735, 788
Alw26I	GTCTC	2 cut(s)	283, 755
AlwNI	CAGNNNCTG	3 cut(s)	217, 392, 791
AoxI	GGCC	1 cut(s)	411
ApeKI	GCWGC	1 cut(s)	521
ApoI	RAATTY	3 cut(s)	20, 250, 419
Asp700I	GAANNNNTTC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	412
AsuHPI	GGTGA	1 cut(s)	309
BarI	GAAGNNNNNNTAC	2 cut(s)	569, 601
BbsI	GAAGAC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	508
BccI	CCATC	6 cut(s)	91, 350, 482, 545, 751, 763
BceAI	ACGGC	1 cut(s)	779
BciT130I	CCWGG	2 cut(s)	606, 688
BcoDI	GTCTC	2 cut(s)	283, 755
BfaI	CTAG	3 cut(s)	53, 78, 567
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	2 cut(s)	493, 522
BlsI	GCNGC	2 cut(s)	494, 523
BmcAI	AGTACT	1 cut(s)	558
Bme1390I	CCNGG	2 cut(s)	606, 688
BmeRI	GACNNNNNGTC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	412
BmrFI	CCNGG	2 cut(s)	606, 688
BmsI	GCATC	1 cut(s)	662
BpiI	GAAGAC	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	221
BsaI	GGTCTC	1 cut(s)	755
BsaJI	CCNNGG	1 cut(s)	604
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 217, 605, 801
Bse1I	ACTGG	3 cut(s)	10, 204, 222
Bse3DI	GCAATG	1 cut(s)	502
BseBI	CCWGG	2 cut(s)	606, 688
BseDI	CCNNGG	1 cut(s)	604
BseGI	GGATG	2 cut(s)	556, 653
BseLI	CCNNNNNNNGG	4 cut(s)	89, 217, 605, 801
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	3 cut(s)	10, 204, 222
BseXI	GCAGC	1 cut(s)	508
BsgI	GTGCAG	2 cut(s)	690, 819
BshFI	GGCC	1 cut(s)	413
BslI	CCNNNNNNNGG	4 cut(s)	89, 217, 605, 801
BsmAI	GTCTC	2 cut(s)	283, 755
BsnI	GGCC	1 cut(s)	413
Bso31I	GGTCTC	1 cut(s)	755
Bsp143I	GATC	1 cut(s)	473
BspACI	CCGC	1 cut(s)	492
BspANI	GGCC	1 cut(s)	413
BspCNI	CTCAG	1 cut(s)	385
BspTNI	GGTCTC	1 cut(s)	755
BsrDI	GCAATG	1 cut(s)	502
BsrI	ACTGG	3 cut(s)	10, 204, 222
BssECI	CCNNGG	1 cut(s)	604
BssMI	GATC	1 cut(s)	473
Bst2UI	CCWGG	2 cut(s)	606, 688
Bst4CI	ACNGT	1 cut(s)	339
Bst6I	CTCTTC	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	628, 807
BstDEI	CTNAG	1 cut(s)	393
BstF5I	GGATG	2 cut(s)	556, 653
BstKTI	GATC	1 cut(s)	476
BstMAI	GTCTC	2 cut(s)	283, 755
BstMBI	GATC	1 cut(s)	473
BstNI	CCWGG	2 cut(s)	606, 688
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	2 cut(s)	604, 686
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	1 cut(s)	508
BstV2I	GAAGAC	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	413
BtgZI	GCGATG	1 cut(s)	574
BtsCI	GGATG	2 cut(s)	556, 653
Cac8I	GCNNGC	2 cut(s)	628, 807
CaiI	CAGNNNCTG	3 cut(s)	217, 392, 791
Cfr13I	GGNCC	1 cut(s)	412
Csp6I	GTAC	2 cut(s)	557, 797
CviAII	CATG	1 cut(s)	563
CviQI	GTAC	2 cut(s)	557, 797
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	1 cut(s)	475
DpnII	GATC	1 cut(s)	473
DrdI	GACNNNNNNGTC	1 cut(s)	376
DriI	GACNNNNNGTC	1 cut(s)	337
DseDI	GACNNNNNNGTC	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	108
Eam1105I	GACNNNNNGTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	755
EcoRII	CCWGG	2 cut(s)	604, 686
FaeI	CATG	1 cut(s)	566
FatI	CATG	1 cut(s)	562
Fnu4HI	GCNGC	2 cut(s)	493, 522
FokI	GGATG	2 cut(s)	563, 640
Fsp4HI	GCNGC	2 cut(s)	493, 522
FspBI	CTAG	3 cut(s)	53, 78, 567
GluI	GCNGC	2 cut(s)	493, 522
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	413
Hin1II	CATG	1 cut(s)	566
HinfI	GANTC	5 cut(s)	276, 308, 641, 701, 817
HphI	GGTGA	1 cut(s)	309
Hpy188I	TCNGA	2 cut(s)	388, 781
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	1 cut(s)	339
HpyCH4V	TGCA	8 cut(s)	187, 428, 532, 614, 630, 653, 707, 836
HpyF3I	CTNAG	1 cut(s)	393
Hsp92II	CATG	1 cut(s)	566
Kzo9I	GATC	1 cut(s)	473
LmnI	GCTCC	1 cut(s)	9
Lsp1109I	GCAGC	1 cut(s)	508
LweI	GCATC	1 cut(s)	662
MaeI	CTAG	3 cut(s)	53, 78, 567
MaeIII	GTNAC	2 cut(s)	662, 841
MalI	GATC	1 cut(s)	475
MboI	GATC	1 cut(s)	473
MboII	GAAGA	5 cut(s)	35, 95, 173, 207, 533
MluCI	AATT	5 cut(s)	20, 250, 419, 635, 692
MlyI	GAGTC	1 cut(s)	285
MnlI	CCTC	6 cut(s)	105, 111, 145, 196, 524, 686
MroXI	GAANNNNTTC	1 cut(s)	244
MseI	TTAA	5 cut(s)	129, 272, 357, 417, 711
MslI	CAYNNNNRTG	1 cut(s)	12
MspR9I	CCNGG	2 cut(s)	606, 688
MvaI	CCWGG	2 cut(s)	606, 688
NdeII	GATC	1 cut(s)	473
NlaIII	CATG	1 cut(s)	566
NmuCI	GTSAC	1 cut(s)	662
NspI	RCATGY	1 cut(s)	566
PdmI	GAANNNNTTC	1 cut(s)	244
PfeI	GAWTC	4 cut(s)	308, 641, 701, 817
PflMI	CCANNNNNTGG	3 cut(s)	89, 217, 605
PkrI	GCNGC	2 cut(s)	494, 523
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
Psp6I	CCWGG	2 cut(s)	604, 686
PspGI	CCWGG	2 cut(s)	604, 686
PspPI	GGNCC	1 cut(s)	412
PstNI	CAGNNNCTG	3 cut(s)	217, 392, 791
RsaI	GTAC	2 cut(s)	558, 798
RsaNI	GTAC	2 cut(s)	557, 797
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	5 cut(s)	129, 272, 357, 417, 711
SatI	GCNGC	2 cut(s)	493, 522
Sau3AI	GATC	1 cut(s)	473
Sau96I	GGNCC	1 cut(s)	412
ScaI	AGTACT	1 cut(s)	558
SchI	GAGTC	1 cut(s)	285
ScrFI	CCNGG	2 cut(s)	606, 688
SfaNI	GCATC	1 cut(s)	662
SfcI	CTRYAG	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	12
Sse9I	AATT	5 cut(s)	20, 250, 419, 635, 692
SsiI	CCGC	1 cut(s)	492
SspI	AATATT	1 cut(s)	243
SspMI	CTAG	3 cut(s)	53, 78, 567
StyD4I	CCNGG	2 cut(s)	604, 686
TaaI	ACNGT	1 cut(s)	339
TasI	AATT	5 cut(s)	20, 250, 419, 635, 692
TatI	WGTACW	1 cut(s)	556
TauI	GCSGC	1 cut(s)	495
TfiI	GAWTC	4 cut(s)	308, 641, 701, 817
Tru1I	TTAA	5 cut(s)	129, 272, 357, 417, 711
Tru9I	TTAA	5 cut(s)	129, 272, 357, 417, 711
TseFI	GTSAC	1 cut(s)	662
TseI	GCWGC	1 cut(s)	521
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	5 cut(s)	165, 272, 513, 577, 714
Van91I	CCANNNNNTGG	3 cut(s)	89, 217, 605
XapI	RAATTY	3 cut(s)	20, 250, 419
XceI	RCATGY	1 cut(s)	566
XmnI	GAANNNNTTC	1 cut(s)	244
XspI	CTAG	3 cut(s)	53, 78, 567
ZrmI	AGTACT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.