Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0021291

Physical Location & Seq

Genomic Coordinates Forward (+)

48235845 .. 48236533

Gene Structure 689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG383000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCTCCACCAGTATGGGAAATTTTGGAATGGTGTTGTCACTCTTCTAAAACTAGAAAACAAGCCTTCTGGGTTAGCTAGTCCATCTGCTGGTTATATTCCTCTTCTTTTGAGGGCTTACGAAAAGGTTAAAACAATGGGGGGGTATATTGATGAGGTTCTTGCTTGTCAGCATATTTCATTTCTTCTGCAACTTGGAAGACTGGAGGAAGCCCAGAAACTGGCAGAAAATCTTTGTTGTGGAATATTTTCAAATTCAATGAAGTTATGGCTATTAAGAGTCTCTGTAGGTGTTAGACACTTTACAAGGGATTCCATTTCACTGAGTAAAGCTGACCTACTGTCCATCTTTGAACTTCTTAAAGATGTTTTGACAAGAGTGTCCATTTCAGAAGCTGAGAACCTGTGGTTAATGGCCCTTAAATTCTTTGCAAATCAAAAACATTACTTTGACAAGTTAGTTGAGATTTCTGTTAGATCATTGACAAAAAATGGCGGCAATGAACAAGGATTTTCCCTCTCTGCTGCTATTGTGCATTTTGTTCTTCAAAAGGATGGAGTACTACATGCTAGAGAGATGTATAAACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

U3_assoc_6

Protein Analysis

196

Amino Acids

22.16

Weight (kDa)

9.24

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021291)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c11g0499491 RchiOBHm_Chr7g0223961
rosa_samantha	Rh7AG364200 Rh7BG355600 Rh7CG383000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	379
AccB7I	CCANNNNNTGG	2 cut(s)	89, 220
AciI	CCGC	1 cut(s)	495
AcsI	RAATTY	3 cut(s)	20, 253, 422
AfaI	GTAC	1 cut(s)	561
AfiI	CCNNNNNNNGG	2 cut(s)	89, 220
AgsI	TTSAA	4 cut(s)	252, 258, 353, 548
AhdI	GACNNNNNGTC	1 cut(s)	340
AluBI	AGCT	3 cut(s)	77, 332, 395
AluI	AGCT	3 cut(s)	77, 332, 395
Alw26I	GTCTC	1 cut(s)	286
AlwNI	CAGNNNCTG	2 cut(s)	220, 395
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	3 cut(s)	20, 253, 422
Asp700I	GAANNNNTTC	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	415
BbsI	GAAGAC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	3 cut(s)	91, 353, 548
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	3 cut(s)	53, 78, 570
BfmI	CTRYAG	1 cut(s)	285
BisI	GCNGC	2 cut(s)	496, 525
BlsI	GCNGC	2 cut(s)	497, 526
BmcAI	AGTACT	1 cut(s)	561
BmeRI	GACNNNNNGTC	1 cut(s)	340
BmgT120I	GGNCC	1 cut(s)	415
BpiI	GAAGAC	1 cut(s)	205
BpmI	CTGGAG	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 220
Bse1I	ACTGG	3 cut(s)	10, 207, 225
Bse3DI	GCAATG	1 cut(s)	505
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	2 cut(s)	89, 220
BseMI	GCAATG	1 cut(s)	505
BseMII	CTCAG	2 cut(s)	314, 387
BseNI	ACTGG	3 cut(s)	10, 207, 225
BseXI	GCAGC	1 cut(s)	511
BshFI	GGCC	1 cut(s)	416
BslI	CCNNNNNNNGG	2 cut(s)	89, 220
BsmAI	GTCTC	1 cut(s)	286
BsnI	GGCC	1 cut(s)	416
Bsp143I	GATC	1 cut(s)	476
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	2 cut(s)	315, 388
BsrDI	GCAATG	1 cut(s)	505
BsrI	ACTGG	3 cut(s)	10, 207, 225
BssMI	GATC	1 cut(s)	476
Bst4CI	ACNGT	2 cut(s)	342, 588
Bst6I	CTCTTC	2 cut(s)	48, 108
BstDEI	CTNAG	2 cut(s)	323, 396
BstF5I	GGATG	1 cut(s)	559
BstKTI	GATC	1 cut(s)	479
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	476
BstNSI	RCATGY	1 cut(s)	569
BstSFI	CTRYAG	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	511
BstV2I	GAAGAC	1 cut(s)	205
BstXI	CCANNNNNNTGG	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	416
BtsCI	GGATG	1 cut(s)	559
BtsIMutI	CAGTG	1 cut(s)	320
CaiI	CAGNNNCTG	2 cut(s)	220, 395
Cfr13I	GGNCC	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	560
CviAII	CATG	1 cut(s)	566
CviJI	RGCY	8 cut(s)	64, 77, 116, 212, 271, 332, 395, 416
CviKI_1	RGCY	8 cut(s)	64, 77, 116, 212, 271, 332, 395, 416
CviQI	GTAC	1 cut(s)	560
DdeI	CTNAG	2 cut(s)	323, 396
DpnI	GATC	1 cut(s)	478
DpnII	GATC	1 cut(s)	476
DrdI	GACNNNNNNGTC	1 cut(s)	379
DriI	GACNNNNNGTC	1 cut(s)	340
DseDI	GACNNNNNNGTC	1 cut(s)	379
Eam1104I	CTCTTC	2 cut(s)	48, 108
Eam1105I	GACNNNNNGTC	1 cut(s)	340
EarI	CTCTTC	2 cut(s)	48, 108
FaeI	CATG	1 cut(s)	569
FaiI	YATR	7 cut(s)	15, 96, 147, 174, 268, 567, 582
FatI	CATG	1 cut(s)	565
Fnu4HI	GCNGC	2 cut(s)	496, 525
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	2 cut(s)	496, 525
FspBI	CTAG	3 cut(s)	53, 78, 570
GluI	GCNGC	2 cut(s)	496, 525
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	416
Hin1II	CATG	1 cut(s)	569
HinfI	GANTC	2 cut(s)	279, 311
Hpy188I	TCNGA	1 cut(s)	391
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	2 cut(s)	342, 588
HpyCH4V	TGCA	3 cut(s)	190, 431, 535
HpyF3I	CTNAG	2 cut(s)	323, 396
Hsp92II	CATG	1 cut(s)	569
Kzo9I	GATC	1 cut(s)	476
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	7 cut(s)	23, 54, 75, 188, 206, 227, 416
Lsp1109I	GCAGC	1 cut(s)	511
MaeI	CTAG	3 cut(s)	53, 78, 570
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	478
MboI	GATC	1 cut(s)	476
MboII	GAAGA	5 cut(s)	35, 95, 176, 210, 536
MluCI	AATT	3 cut(s)	20, 253, 422
MlyI	GAGTC	1 cut(s)	288
MnlI	CCTC	5 cut(s)	105, 111, 148, 199, 527
MroXI	GAANNNNTTC	1 cut(s)	247
MseI	TTAA	5 cut(s)	129, 275, 360, 410, 420
MslI	CAYNNNNRTG	1 cut(s)	12
NdeII	GATC	1 cut(s)	476
NlaIII	CATG	1 cut(s)	569
NmuCI	GTSAC	1 cut(s)	37
NspI	RCATGY	1 cut(s)	569
PdmI	GAANNNNTTC	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	311
PflMI	CCANNNNNTGG	2 cut(s)	89, 220
PkrI	GCNGC	2 cut(s)	497, 526
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PspPI	GGNCC	1 cut(s)	415
PstNI	CAGNNNCTG	2 cut(s)	220, 395
RsaI	GTAC	1 cut(s)	561
RsaNI	GTAC	1 cut(s)	560
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	5 cut(s)	129, 275, 360, 410, 420
SatI	GCNGC	2 cut(s)	496, 525
Sau3AI	GATC	1 cut(s)	476
Sau96I	GGNCC	1 cut(s)	415
ScaI	AGTACT	1 cut(s)	561
SchI	GAGTC	1 cut(s)	288
SetI	ASST	8 cut(s)	79, 129, 159, 292, 334, 339, 397, 405
SfcI	CTRYAG	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	12
Sse9I	AATT	3 cut(s)	20, 253, 422
SsiI	CCGC	1 cut(s)	495
SspI	AATATT	1 cut(s)	246
SspMI	CTAG	3 cut(s)	53, 78, 570
TaaI	ACNGT	2 cut(s)	342, 588
TasI	AATT	3 cut(s)	20, 253, 422
TatI	WGTACW	1 cut(s)	559
TauI	GCSGC	1 cut(s)	498
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	5 cut(s)	129, 275, 360, 410, 420
Tru9I	TTAA	5 cut(s)	129, 275, 360, 410, 420
TscAI	CASTG	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	524
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	3 cut(s)	168, 275, 516
TspRI	CASTG	1 cut(s)	327
Van91I	CCANNNNNTGG	2 cut(s)	89, 220
XapI	RAATTY	3 cut(s)	20, 253, 422
XceI	RCATGY	1 cut(s)	569
XmnI	GAANNNNTTC	1 cut(s)	247
XspI	CTAG	3 cut(s)	53, 78, 570
ZrmI	AGTACT	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.