Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021291

Physical Location & Seq

Genomic Coordinates Forward (+)

45833763 .. 45835283

Gene Structure 1521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20054

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGCTCCACCAGTATGGGAAATTTTTGAATGGTGTTGTCACTCTTCTAAAACTAGAAAACAAGCCTTCTGGGTTAGCTAGTCCATCTGCTGGTTATATTCCTCTTCTTTTGAGGGCTTACGAAAAGGTTAAAACAATGGGGGGTATATTGATGTGGTTCTTGCTTGTCAGCATATTTCATTTCTTCTGCAACTTGGAAGACTGGAGGAAGCCCAGAAACTGGCAGAAAATCTTTGTTTGTGGAATATTTTCAAATTCAATGAAGTTATGGCTATTAAGAGTCTCTGTAGGTGTTAGACACTTTACAAGGGATTCCATTTCACCGAGTAAAGCTGACCTACTGTCCATCTTTGAACTTCTTAAAGATGTTTTGGCAAGAGTGTCCATTTCAGAAGCTGAGAACCTGTGGTTAATGGCCCTTAAATTCTTTGCAAATCAAAAACATTACTTTGACAAGTTAGTTGAGATTTCTGTTAGATCATTGACAAAAAATGGCGGCAATGAACAAGGATTTTCCCTCTCTGCTGCTATTATGCATTTTGTTCTTCAAAAGGATGGAGTACTACATGCTAGAGAGATATATAAACGCTTCATCCCTTTACCACACCCTGGACCTGCACTATATAGAGCCTGCATTGAATTGGAATCAAACCTTGCATCCATTAGTGACAAAGATAGCCTCATCAATGCCAGGAAATTATATGAATCTGCACTTAAAACTTATGACCAAGATTTGAGCTTATGGCGAGATTACTATTTGATGGAGACGAAGGTAAGCTTTAGCAGTTTACAAACATCTACTATAAAGAGAACTGCAATTTCCATTTTCAATAAATTTGTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

U3_assoc_6

Protein Analysis

281

Amino Acids

32.23

Weight (kDa)

9.56

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021291)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c11g0499491 RchiOBHm_Chr7g0223961
rosa_samantha	Rh7AG364200 Rh7BG355600 Rh7CG383000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	622
AccB7I	CCANNNNNTGG	3 cut(s)	89, 219, 608
AciI	CCGC	1 cut(s)	495
AcsI	RAATTY	4 cut(s)	20, 253, 422, 833
AfaI	GTAC	1 cut(s)	561
AfiI	CCNNNNNNNGG	3 cut(s)	89, 219, 608
AgsI	TTSAA	7 cut(s)	28, 252, 258, 353, 548, 638, 829
AhdI	GACNNNNNGTC	1 cut(s)	340
AjnI	CCWGG	2 cut(s)	607, 689
AluBI	AGCT	5 cut(s)	77, 332, 395, 738, 777
AluI	AGCT	5 cut(s)	77, 332, 395, 738, 777
Alw26I	GTCTC	2 cut(s)	286, 758
AlwNI	CAGNNNCTG	2 cut(s)	219, 395
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	4 cut(s)	20, 253, 422, 833
Asp700I	GAANNNNTTC	1 cut(s)	247
AspS9I	GGNCC	2 cut(s)	415, 611
AsuHPI	GGTGA	1 cut(s)	312
AvaII	GGWCC	1 cut(s)	611
BbsI	GAAGAC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	4 cut(s)	91, 353, 548, 754
BciT130I	CCWGG	2 cut(s)	609, 691
BcoDI	GTCTC	2 cut(s)	286, 758
BfaI	CTAG	3 cut(s)	53, 78, 570
BfmI	CTRYAG	1 cut(s)	285
BfuAI	ACCTGC	1 cut(s)	622
BisI	GCNGC	2 cut(s)	496, 525
BlsI	GCNGC	2 cut(s)	497, 526
BmcAI	AGTACT	1 cut(s)	561
Bme1390I	CCNGG	2 cut(s)	609, 691
Bme18I	GGWCC	1 cut(s)	611
BmeRI	GACNNNNNGTC	1 cut(s)	340
BmgT120I	GGNCC	2 cut(s)	415, 611
BmrFI	CCNGG	2 cut(s)	609, 691
BmsI	GCATC	1 cut(s)	665
BpiI	GAAGAC	1 cut(s)	204
BpmI	CTGGAG	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	607
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 219, 608
Bse1I	ACTGG	3 cut(s)	10, 206, 224
Bse3DI	GCAATG	1 cut(s)	505
BseBI	CCWGG	2 cut(s)	609, 691
BseDI	CCNNGG	1 cut(s)	607
BseGI	GGATG	3 cut(s)	559, 591, 656
BseLI	CCNNNNNNNGG	3 cut(s)	89, 219, 608
BseMI	GCAATG	1 cut(s)	505
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	3 cut(s)	10, 206, 224
BseXI	GCAGC	1 cut(s)	511
BsgI	GTGCAG	2 cut(s)	600, 693
BshFI	GGCC	1 cut(s)	416
BslI	CCNNNNNNNGG	3 cut(s)	89, 219, 608
BsmAI	GTCTC	2 cut(s)	286, 758
BsmBI	CGTCTC	1 cut(s)	758
BsnI	GGCC	1 cut(s)	416
Bsp143I	GATC	1 cut(s)	476
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	1 cut(s)	388
BspMI	ACCTGC	1 cut(s)	622
BsrDI	GCAATG	1 cut(s)	505
BsrI	ACTGG	3 cut(s)	10, 206, 224
BssECI	CCNNGG	1 cut(s)	607
BssMI	GATC	1 cut(s)	476
Bst2UI	CCWGG	2 cut(s)	609, 691
Bst4CI	ACNGT	1 cut(s)	342
Bst6I	CTCTTC	2 cut(s)	48, 108
BstC8I	GCNNGC	1 cut(s)	631
BstDEI	CTNAG	1 cut(s)	396
BstF5I	GGATG	3 cut(s)	559, 591, 656
BstKTI	GATC	1 cut(s)	479
BstMAI	GTCTC	2 cut(s)	286, 758
BstMBI	GATC	1 cut(s)	476
BstNI	CCWGG	2 cut(s)	609, 691
BstNSI	RCATGY	1 cut(s)	569
BstSCI	CCNGG	2 cut(s)	607, 689
BstSFI	CTRYAG	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	511
BstV2I	GAAGAC	1 cut(s)	204
BstXI	CCANNNNNNTGG	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	416
BtsCI	GGATG	3 cut(s)	559, 591, 656
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	1 cut(s)	631
CaiI	CAGNNNCTG	2 cut(s)	219, 395
Cfr13I	GGNCC	2 cut(s)	415, 611
Csp6I	GTAC	1 cut(s)	560
CviAII	CATG	1 cut(s)	566
CviQI	GTAC	1 cut(s)	560
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	1 cut(s)	478
DpnII	GATC	1 cut(s)	476
DriI	GACNNNNNGTC	1 cut(s)	340
Eam1104I	CTCTTC	2 cut(s)	48, 108
Eam1105I	GACNNNNNGTC	1 cut(s)	340
EarI	CTCTTC	2 cut(s)	48, 108
Eco47I	GGWCC	1 cut(s)	611
EcoRII	CCWGG	2 cut(s)	607, 689
EcoT22I	ATGCAT	1 cut(s)	537
Esp3I	CGTCTC	1 cut(s)	758
FaeI	CATG	1 cut(s)	569
FalI	AAGNNNNNCTT	2 cut(s)	761, 793
FatI	CATG	1 cut(s)	565
Fnu4HI	GCNGC	2 cut(s)	496, 525
FokI	GGATG	3 cut(s)	566, 578, 643
Fsp4HI	GCNGC	2 cut(s)	496, 525
FspBI	CTAG	3 cut(s)	53, 78, 570
GluI	GCNGC	2 cut(s)	496, 525
GsuI	CTGGAG	1 cut(s)	223
HaeIII	GGCC	1 cut(s)	416
Hin1II	CATG	1 cut(s)	569
HindIII	AAGCTT	1 cut(s)	775
HinfI	GANTC	4 cut(s)	279, 311, 644, 704
HphI	GGTGA	1 cut(s)	312
Hpy166II	GTNNAC	1 cut(s)	788
Hpy188I	TCNGA	1 cut(s)	391
Hpy8I	GTNNAC	1 cut(s)	788
HpyAV	CCTTC	2 cut(s)	75, 763
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4V	TGCA	8 cut(s)	189, 431, 535, 617, 633, 656, 710, 815
HpyF3I	CTNAG	1 cut(s)	396
Hsp92II	CATG	1 cut(s)	569
Kzo9I	GATC	1 cut(s)	476
LmnI	GCTCC	1 cut(s)	9
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	1 cut(s)	665
MaeI	CTAG	3 cut(s)	53, 78, 570
MaeIII	GTNAC	2 cut(s)	37, 665
MalI	GATC	1 cut(s)	478
MboI	GATC	1 cut(s)	476
MboII	GAAGA	5 cut(s)	35, 95, 175, 209, 536
MluCI	AATT	7 cut(s)	20, 253, 422, 638, 695, 816, 833
MlyI	GAGTC	1 cut(s)	288
MnlI	CCTC	5 cut(s)	105, 111, 198, 527, 689
Mph1103I	ATGCAT	1 cut(s)	537
MroXI	GAANNNNTTC	1 cut(s)	247
MseI	TTAA	7 cut(s)	129, 275, 360, 410, 420, 714, 844
MslI	CAYNNNNRTG	1 cut(s)	12
MspR9I	CCNGG	2 cut(s)	609, 691
MvaI	CCWGG	2 cut(s)	609, 691
NdeII	GATC	1 cut(s)	476
NlaIII	CATG	1 cut(s)	569
NmuCI	GTSAC	2 cut(s)	37, 665
NsiI	ATGCAT	1 cut(s)	537
NspI	RCATGY	1 cut(s)	569
PdmI	GAANNNNTTC	1 cut(s)	247
PfeI	GAWTC	3 cut(s)	311, 644, 704
PflMI	CCANNNNNTGG	3 cut(s)	89, 219, 608
PkrI	GCNGC	2 cut(s)	497, 526
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
Psp6I	CCWGG	2 cut(s)	607, 689
PspGI	CCWGG	2 cut(s)	607, 689
PspPI	GGNCC	2 cut(s)	415, 611
PstNI	CAGNNNCTG	2 cut(s)	219, 395
RsaI	GTAC	1 cut(s)	561
RsaNI	GTAC	1 cut(s)	560
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	7 cut(s)	129, 275, 360, 410, 420, 714, 844
SatI	GCNGC	2 cut(s)	496, 525
Sau3AI	GATC	1 cut(s)	476
Sau96I	GGNCC	2 cut(s)	415, 611
ScaI	AGTACT	1 cut(s)	561
SchI	GAGTC	1 cut(s)	288
ScrFI	CCNGG	2 cut(s)	609, 691
SfaNI	GCATC	1 cut(s)	665
SfcI	CTRYAG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	611
SmiMI	CAYNNNNRTG	1 cut(s)	12
Sse9I	AATT	7 cut(s)	20, 253, 422, 638, 695, 816, 833
SsiI	CCGC	1 cut(s)	495
SspI	AATATT	1 cut(s)	246
SspMI	CTAG	3 cut(s)	53, 78, 570
StyD4I	CCNGG	2 cut(s)	607, 689
TaaI	ACNGT	1 cut(s)	342
TasI	AATT	7 cut(s)	20, 253, 422, 638, 695, 816, 833
TatI	WGTACW	1 cut(s)	559
TauI	GCSGC	1 cut(s)	498
TfiI	GAWTC	3 cut(s)	311, 644, 704
Tru1I	TTAA	7 cut(s)	129, 275, 360, 410, 420, 714, 844
Tru9I	TTAA	7 cut(s)	129, 275, 360, 410, 420, 714, 844
TseFI	GTSAC	2 cut(s)	37, 665
TseI	GCWGC	1 cut(s)	524
Tsp45I	GTSAC	2 cut(s)	37, 665
TspDTI	ATGAA	5 cut(s)	167, 275, 516, 580, 717
Van91I	CCANNNNNTGG	3 cut(s)	89, 219, 608
VpaK11BI	GGWCC	1 cut(s)	611
XapI	RAATTY	4 cut(s)	20, 253, 422, 833
XceI	RCATGY	1 cut(s)	569
XmnI	GAANNNNTTC	1 cut(s)	247
XspI	CTAG	3 cut(s)	53, 78, 570
ZrmI	AGTACT	1 cut(s)	561
Zsp2I	ATGCAT	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.