RchiOBHm_Chr1g0314031

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0022598
Physical Location & Seq
Reverse (-)
1294130 .. 1294869
740 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54472

Sequence Viewer

Length: 513 bp
ATGCTTAAGAAGCCGGATAGTAACCCAGCTTACTTGAGGATGCAACTGAATCAGTATTCAAACTTAGACAAGGCTGATTGGATCTTTGGAAATACTCTCCAAGCACTAGAAAGCGAGATTAAAGGAGATAGAGGATATGGAGCAAGCCTATGGAAGCCTCTTGGTGAAGAATGCATCAAATGGCTAGAAGCAAAGGCACCTAAATCAGTGGTGTATGTCTCCTTTGGAAGCATGGTGTCCCTGACAGCAGAGCAGATGGAACAGTTTGCGTCGGGCTTGAAAGAAAGCGGAGTGCACTTTCTGTGGGTGGTAAGAGCATCTGAACTGAGTAAATTGCCGAATGAAATCATTGATTCAGTAAAGGAAAAGGGTCTATTAGTGACTTGGCGTAACCAGCTGGAAGCTTTGGCACATGATGCAATTGGGTACTTTGTGACTCATTGTGGTTGGAACTCGATCCTCGAAGGGCTCAGACTTGGGGGTTCCAATGGTTGCAGTGCCAAAGTGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009072 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009987 GO:0010029 GO:0010030 GO:0010817 GO:0016043 GO:0016143 GO:0016144 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032787 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042445 GO:0042537 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045229 GO:0046482 GO:0046527 GO:0047251 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051179 GO:0051239 GO:0051240 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080002 GO:0080043 GO:0080044 GO:0090704 GO:0098542 GO:1900140 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901657 GO:1901659 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

170

Amino Acids

18.81

Weight (kDa)

6.3

Isoelectric Point (pI)

22.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 48 - 160 2.7e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022598)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0314031
rosa_multiflora Rmu_sc0033412.1_g000001 Rmu_sc0033413.1_g000001
rosa_samantha Rh1AG008300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 196
AciI CCGC 1 cut(s) 288
AclWI GGATC 2 cut(s) 89, 451
AfaI GTAC 1 cut(s) 428
AflII CTTAAG 1 cut(s) 5
AgsI TTSAA 2 cut(s) 60, 280
AluBI AGCT 3 cut(s) 29, 397, 404
AluI AGCT 3 cut(s) 29, 397, 404
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 1 cut(s) 223
Alw44I GTGCAC 1 cut(s) 293
AlwI GGATC 2 cut(s) 89, 451
ApaLI GTGCAC 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 297
BanI GGYRCC 1 cut(s) 196
BanII GRGCYC 1 cut(s) 471
Bbv12I GWGCWC 1 cut(s) 297
BccI CCATC 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 2 cut(s) 107, 185
BfrI CTTAAG 1 cut(s) 5
BmiI GGNNCC 2 cut(s) 198, 484
BmsI GCATC 4 cut(s) 30, 183, 326, 406
BpuEI CTTGAG 1 cut(s) 55
BseGI GGATG 1 cut(s) 45
BseMII CTCAG 2 cut(s) 317, 484
BseSI GKGCMC 1 cut(s) 297
BseYI CCCAGC 1 cut(s) 25
BshNI GGYRCC 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 1 cut(s) 223
BsmAI GTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 223
BsmI GAATGC 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 297, 471
Bsp143I GATC 2 cut(s) 81, 456
BspACI CCGC 1 cut(s) 288
BspCNI CTCAG 2 cut(s) 318, 483
BspLI GGNNCC 2 cut(s) 198, 484
BspPI GGATC 2 cut(s) 89, 451
BspT107I GGYRCC 1 cut(s) 196
BspTI CTTAAG 1 cut(s) 5
BssMI GATC 2 cut(s) 81, 456
Bst4CI ACNGT 1 cut(s) 264
BstAFI CTTAAG 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 3 cut(s) 64, 326, 470
BstF5I GGATG 1 cut(s) 45
BstKTI GATC 2 cut(s) 84, 459
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 2 cut(s) 81, 456
BstMWI GCNNNNNNNGC 3 cut(s) 10, 394, 416
BstSLI GKGCMC 1 cut(s) 297
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BtsCI GGATG 1 cut(s) 45
BtsI GCAGTG 1 cut(s) 502
BtsIMutI CAGTG 2 cut(s) 213, 502
Cac8I GCNNGC 1 cut(s) 145
CseI GACGC 1 cut(s) 258
Csp6I GTAC 1 cut(s) 427
CviAII CATG 2 cut(s) 232, 413
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 3 cut(s) 64, 326, 470
DpnI GATC 2 cut(s) 83, 458
DpnII GATC 2 cut(s) 81, 456
Eco24I GRGCYC 1 cut(s) 471
EcoT22I ATGCAT 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 471
FaeI CATG 2 cut(s) 235, 416
FaiI YATR 5 cut(s) 138, 151, 216, 233, 414
FaqI GGGAC 1 cut(s) 223
FatI CATG 2 cut(s) 231, 412
FokI GGATG 1 cut(s) 52
FriOI GRGCYC 1 cut(s) 471
FspBI CTAG 2 cut(s) 107, 185
GsaI CCCAGC 1 cut(s) 29
HapII CCGG 1 cut(s) 14
HgaI GACGC 1 cut(s) 258
Hin1II CATG 2 cut(s) 235, 416
HindIII AAGCTT 1 cut(s) 402
HinfI GANTC 3 cut(s) 49, 353, 436
HpaII CCGG 1 cut(s) 14
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 2 cut(s) 322, 473
Hpy8I GTNNAC 1 cut(s) 295
Hpy99I CGWCG 1 cut(s) 274
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 1 cut(s) 264
HpyCH4V TGCA 5 cut(s) 43, 174, 295, 419, 495
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 394, 416
HpyF3I CTNAG 3 cut(s) 64, 326, 470
Hsp92II CATG 2 cut(s) 235, 416
Kzo9I GATC 2 cut(s) 81, 456
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 5 cut(s) 27, 39, 254, 383, 407
LweI GCATC 4 cut(s) 30, 183, 326, 406
MaeI CTAG 2 cut(s) 107, 185
MaeIII GTNAC 4 cut(s) 20, 379, 389, 433
MalI GATC 2 cut(s) 83, 458
MboI GATC 2 cut(s) 81, 456
MboII GAAGA 1 cut(s) 179
MfeI CAATTG 1 cut(s) 420
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 2 cut(s) 297, 471
MluCI AATT 2 cut(s) 332, 420
MlyI GAGTC 1 cut(s) 430
MmeI TCCRAC 1 cut(s) 428
MnlI CCTC 4 cut(s) 30, 125, 168, 470
Mph1103I ATGCAT 1 cut(s) 176
MseI TTAA 2 cut(s) 6, 120
MspA1I CMGCKG 1 cut(s) 397
MspCI CTTAAG 1 cut(s) 5
MspI CCGG 1 cut(s) 14
MunI CAATTG 1 cut(s) 420
Mva1269I GAATGC 1 cut(s) 176
MwoI GCNNNNNNNGC 3 cut(s) 10, 394, 416
NdeII GATC 2 cut(s) 81, 456
NlaIII CATG 2 cut(s) 235, 416
NlaIV GGNNCC 2 cut(s) 198, 484
NmuCI GTSAC 2 cut(s) 379, 433
NsiI ATGCAT 1 cut(s) 176
PctI GAATGC 1 cut(s) 176
PfeI GAWTC 2 cut(s) 49, 353
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PspFI CCCAGC 1 cut(s) 25
PspN4I GGNNCC 2 cut(s) 198, 484
PsuI RGATCY 1 cut(s) 81
PvuII CAGCTG 1 cut(s) 397
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
SaqAI TTAA 2 cut(s) 6, 120
Sau3AI GATC 2 cut(s) 81, 456
SchI GAGTC 1 cut(s) 430
SduI GDGCHC 2 cut(s) 297, 471
SetI ASST 4 cut(s) 31, 202, 399, 406
SfaNI GCATC 4 cut(s) 30, 183, 326, 406
SmlI CTYRAG 2 cut(s) 5, 34
SmoI CTYRAG 2 cut(s) 5, 34
Sse9I AATT 2 cut(s) 332, 420
SsiI CCGC 1 cut(s) 288
SspMI CTAG 2 cut(s) 107, 185
TaaI ACNGT 1 cut(s) 264
TaqI TCGA 2 cut(s) 455, 462
TasI AATT 2 cut(s) 332, 420
TfiI GAWTC 2 cut(s) 49, 353
Tru1I TTAA 2 cut(s) 6, 120
Tru9I TTAA 2 cut(s) 6, 120
TscAI CASTG 2 cut(s) 213, 502
TseFI GTSAC 2 cut(s) 379, 433
Tsp45I GTSAC 2 cut(s) 379, 433
TspDTI ATGAA 1 cut(s) 357
TspRI CASTG 2 cut(s) 213, 502
Vha464I CTTAAG 1 cut(s) 5
VneI GTGCAC 1 cut(s) 293
XspI CTAG 2 cut(s) 107, 185
Zsp2I ATGCAT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.