Rh1AG008300

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0022598
Physical Location & Seq
Reverse (-)
1290638 .. 1292387
1750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG008300.1

Sequence Viewer

Length: 405 bp
ATGCTTAAGAAGCCGGATAGTAACCCAGCTTACTTGAGGATGCAACTGAATCAGTATTCAAACTTAGACAAGGCTGATTGGATCTTTGGAAATACTCTCCAAGCACTAGAAAGCGAGGCTGCCAAAGGAGTAGCAAAGCTATGGCCAGCAAAGTTGATAGGCCCTATGATCCCTTCAGCTTATTTGGATGGTCAGATTAAAGGAGATAGAGGATATGGAGCAAGCCTATGGAAGCCTCTTGGTGAAGAATGCATCAAATGGCTAGAAGCAAAGGCACCTAAATCAGTGGTGTATGTCTCCTTTGGAAGCATGGTGTCCCTGACAGCAGAGCAGATGGAACAGTTTGCGTCGGGCTTGAAAGAAAGCGGAGTGCACTTTCTGTGGGTGGCTGCAGCTGCAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009072 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009987 GO:0010029 GO:0010030 GO:0010817 GO:0016043 GO:0016143 GO:0016144 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032787 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042445 GO:0042537 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045229 GO:0046482 GO:0046527 GO:0047251 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051179 GO:0051239 GO:0051240 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080002 GO:0080043 GO:0080044 GO:0090704 GO:0098542 GO:1900140 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901657 GO:1901659 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

134

Amino Acids

14.62

Weight (kDa)

7.79

Isoelectric Point (pI)

21.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 73 - 128 7.5e-07 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022598)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0314031
rosa_multiflora Rmu_sc0033412.1_g000001 Rmu_sc0033413.1_g000001
rosa_samantha Rh1AG008300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 389
AccB1I GGYRCC 1 cut(s) 274
AciI CCGC 1 cut(s) 366
AclWI GGATC 2 cut(s) 89, 163
AcoI YGGCCR 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 159
AflII CTTAAG 1 cut(s) 5
AgsI TTSAA 2 cut(s) 60, 358
AluBI AGCT 4 cut(s) 29, 139, 179, 395
AluI AGCT 4 cut(s) 29, 139, 179, 395
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 1 cut(s) 301
Alw44I GTGCAC 1 cut(s) 371
AlwI GGATC 2 cut(s) 89, 163
AoxI GGCC 2 cut(s) 143, 160
ApaLI GTGCAC 1 cut(s) 371
ApeKI GCWGC 4 cut(s) 119, 389, 392, 395
AspS9I GGNCC 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 375
BalI TGGCCA 1 cut(s) 145
BanI GGYRCC 1 cut(s) 274
Bbv12I GWGCWC 1 cut(s) 375
BbvI GCAGC 3 cut(s) 106, 376, 382
BccI CCATC 2 cut(s) 182, 328
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 2 cut(s) 107, 263
BfmI CTRYAG 2 cut(s) 390, 396
BfrI CTTAAG 1 cut(s) 5
BfuAI ACCTGC 1 cut(s) 389
BisI GCNGC 4 cut(s) 120, 390, 393, 396
BlsI GCNGC 4 cut(s) 121, 391, 394, 397
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 276
BmsI GCATC 2 cut(s) 30, 261
BpuEI CTTGAG 1 cut(s) 55
BseGI GGATG 2 cut(s) 45, 193
BseSI GKGCMC 1 cut(s) 375
BseXI GCAGC 3 cut(s) 106, 376, 382
BseYI CCCAGC 1 cut(s) 25
BshFI GGCC 2 cut(s) 145, 162
BshNI GGYRCC 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 375
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 1 cut(s) 301
BsmAI GTCTC 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 301
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 2 cut(s) 145, 162
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 2 cut(s) 81, 168
BspACI CCGC 1 cut(s) 366
BspANI GGCC 2 cut(s) 145, 162
BspLI GGNNCC 1 cut(s) 276
BspMAI CTGCAG 2 cut(s) 394, 400
BspMI ACCTGC 1 cut(s) 389
BspPI GGATC 2 cut(s) 89, 163
BspT107I GGYRCC 1 cut(s) 274
BspTI CTTAAG 1 cut(s) 5
BssMI GATC 2 cut(s) 81, 168
Bst4CI ACNGT 1 cut(s) 342
BstAFI CTTAAG 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 147, 223
BstDEI CTNAG 1 cut(s) 64
BstF5I GGATG 2 cut(s) 45, 193
BstKTI GATC 2 cut(s) 84, 171
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 2 cut(s) 81, 168
BstMWI GCNNNNNNNGC 2 cut(s) 10, 395
BstSFI CTRYAG 2 cut(s) 390, 396
BstSLI GKGCMC 1 cut(s) 375
BstV1I GCAGC 3 cut(s) 106, 376, 382
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuRI GGCC 2 cut(s) 145, 162
BtsCI GGATG 2 cut(s) 45, 193
BtsIMutI CAGTG 1 cut(s) 291
BveI ACCTGC 1 cut(s) 389
Cac8I GCNNGC 2 cut(s) 147, 223
Cfr13I GGNCC 1 cut(s) 161
CseI GACGC 1 cut(s) 336
CviAII CATG 1 cut(s) 310
DdeI CTNAG 1 cut(s) 64
DpnI GATC 2 cut(s) 83, 170
DpnII GATC 2 cut(s) 81, 168
EaeI YGGCCR 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 159
EcoO109I RGGNCCY 1 cut(s) 161
EcoT22I ATGCAT 1 cut(s) 254
FaeI CATG 1 cut(s) 313
FaiI YATR 6 cut(s) 142, 167, 216, 229, 294, 311
FaqI GGGAC 1 cut(s) 301
FatI CATG 1 cut(s) 309
Fnu4HI GCNGC 4 cut(s) 120, 390, 393, 396
FokI GGATG 2 cut(s) 52, 200
Fsp4HI GCNGC 4 cut(s) 120, 390, 393, 396
FspBI CTAG 2 cut(s) 107, 263
GluI GCNGC 4 cut(s) 120, 390, 393, 396
GsaI CCCAGC 1 cut(s) 29
HaeIII GGCC 2 cut(s) 145, 162
HapII CCGG 1 cut(s) 14
HgaI GACGC 1 cut(s) 336
Hin1II CATG 1 cut(s) 313
HinfI GANTC 1 cut(s) 49
HpaII CCGG 1 cut(s) 14
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 1 cut(s) 195
Hpy8I GTNNAC 1 cut(s) 373
Hpy99I CGWCG 1 cut(s) 352
HpyAV CCTTC 1 cut(s) 183
HpyCH4III ACNGT 1 cut(s) 342
HpyCH4V TGCA 5 cut(s) 43, 252, 373, 392, 398
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 395
HpyF3I CTNAG 1 cut(s) 64
Hsp92II CATG 1 cut(s) 313
Kzo9I GATC 2 cut(s) 81, 168
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 5 cut(s) 27, 39, 159, 332, 384
Lsp1109I GCAGC 3 cut(s) 106, 376, 382
LweI GCATC 2 cut(s) 30, 261
MaeI CTAG 2 cut(s) 107, 263
MaeIII GTNAC 1 cut(s) 20
MalI GATC 2 cut(s) 83, 170
MboI GATC 2 cut(s) 81, 168
MboII GAAGA 1 cut(s) 257
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 375
MlsI TGGCCA 1 cut(s) 145
MluNI TGGCCA 1 cut(s) 145
MnlI CCTC 4 cut(s) 30, 109, 203, 246
Mox20I TGGCCA 1 cut(s) 145
Mph1103I ATGCAT 1 cut(s) 254
MscI TGGCCA 1 cut(s) 145
MseI TTAA 2 cut(s) 6, 198
Msp20I TGGCCA 1 cut(s) 145
MspA1I CMGCKG 1 cut(s) 395
MspCI CTTAAG 1 cut(s) 5
MspI CCGG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 254
MwoI GCNNNNNNNGC 2 cut(s) 10, 395
NdeII GATC 2 cut(s) 81, 168
NlaIII CATG 1 cut(s) 313
NlaIV GGNNCC 1 cut(s) 276
NsiI ATGCAT 1 cut(s) 254
PctI GAATGC 1 cut(s) 254
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 4 cut(s) 121, 391, 394, 397
PspFI CCCAGC 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 1 cut(s) 161
PstI CTGCAG 2 cut(s) 394, 400
PsuI RGATCY 1 cut(s) 81
PvuII CAGCTG 1 cut(s) 395
SaqAI TTAA 2 cut(s) 6, 198
SatI GCNGC 4 cut(s) 120, 390, 393, 396
Sau3AI GATC 2 cut(s) 81, 168
Sau96I GGNCC 1 cut(s) 161
SduI GDGCHC 1 cut(s) 375
SetI ASST 6 cut(s) 31, 141, 181, 280, 397, 403
SfaNI GCATC 2 cut(s) 30, 261
SfcI CTRYAG 2 cut(s) 390, 396
SmlI CTYRAG 2 cut(s) 5, 34
SmoI CTYRAG 2 cut(s) 5, 34
SsiI CCGC 1 cut(s) 366
SspMI CTAG 2 cut(s) 107, 263
TaaI ACNGT 1 cut(s) 342
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 2 cut(s) 6, 198
Tru9I TTAA 2 cut(s) 6, 198
TscAI CASTG 1 cut(s) 291
TseI GCWGC 4 cut(s) 119, 389, 392, 395
TspRI CASTG 1 cut(s) 291
Vha464I CTTAAG 1 cut(s) 5
VneI GTGCAC 1 cut(s) 371
XspI CTAG 2 cut(s) 107, 263
Zsp2I ATGCAT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.