Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033412.1

Orthogroup ID

OG0022598

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 729

Gene Structure 728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033412.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 572 bp

atgcccttggtgattcctggcttgcccccactcgacattgctgatctgcctggcatgctgaagaagccggatagtaacccagcttacttgaggatgcaactgaatcagtattcaaacttggacaaggctgattggatctttggaaatactttccgagcactagaaagcgaggccgccaaaggagtagcaaagctatggccagcgaagttgataggccctatgatcccttcagcttatttggatggtcagattaaaggagatagaggatatggagcaagcctatggaagcctcttggtgaagagtgcatcaaatggctagaagcaaaggcacctaaatcagtggtgtatgtctcctttggaagcatggtgtccctgacagcagaacagatggaagagtttgcgttgggcttgaaagaaagtggggtgcactttctgtgggtggtcagagcatctgaactgagtaaattgccgaatgaaatcattgattcagtaaaggaaaagggtctactagtgacttggtgtaaccagctggaagctttggcacatgatgcaattgggtactttgtgactca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009072 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009987 GO:0010029 GO:0010030 GO:0010817 GO:0016043 GO:0016143 GO:0016144 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032787 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042445 GO:0042537 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045229 GO:0046482 GO:0046527 GO:0047251 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051179 GO:0051239 GO:0051240 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080002 GO:0080043 GO:0080044 GO:0090704 GO:0098542 GO:1900140 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901657 GO:1901659 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

190

Amino Acids

20.94

Weight (kDa)

5.46

Isoelectric Point (pI)

23.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022598)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314031
rosa_multiflora	Rmu_sc0033412.1_g000001 Rmu_sc0033413.1_g000001
rosa_samantha	Rh1AG008300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	505
AciI	CCGC	1 cut(s)	174
AclWI	GGATC	2 cut(s)	143, 217
AcoI	YGGCCR	1 cut(s)	197
AcuI	CTGAAG	2 cut(s)	80, 213
AfaI	GTAC	1 cut(s)	560
AgsI	TTSAA	2 cut(s)	114, 412
AhlI	ACTAGT	1 cut(s)	508
AjnI	CCWGG	2 cut(s)	16, 49
AluBI	AGCT	5 cut(s)	83, 193, 233, 529, 536
AluI	AGCT	5 cut(s)	83, 193, 233, 529, 536
Alw21I	GWGCWC	2 cut(s)	160, 429
Alw26I	GTCTC	1 cut(s)	355
Alw44I	GTGCAC	1 cut(s)	425
AlwI	GGATC	2 cut(s)	143, 217
AoxI	GGCC	3 cut(s)	171, 197, 214
ApaLI	GTGCAC	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	22, 308
BaeGI	GKGCMC	1 cut(s)	429
BalI	TGGCCA	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	328
Bbv12I	GWGCWC	2 cut(s)	160, 429
BccI	CCATC	2 cut(s)	236, 382
BciT130I	CCWGG	2 cut(s)	18, 51
BcoDI	GTCTC	1 cut(s)	355
BcuI	ACTAGT	1 cut(s)	508
BfaI	CTAG	3 cut(s)	161, 317, 509
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
Bme1390I	CCNGG	2 cut(s)	18, 51
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	2 cut(s)	18, 51
BmsI	GCATC	4 cut(s)	84, 315, 458, 538
BpuEI	CTTGAG	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	6
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	2 cut(s)	18, 51
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	2 cut(s)	99, 247
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	449
BseSI	GKGCMC	1 cut(s)	429
BseYI	CCCAGC	1 cut(s)	79
BshFI	GGCC	3 cut(s)	173, 199, 216
BshNI	GGYRCC	1 cut(s)	328
BsiHKAI	GWGCWC	2 cut(s)	160, 429
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	355
BsmAI	GTCTC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	355
BsnI	GGCC	3 cut(s)	173, 199, 216
Bsp1286I	GDGCHC	2 cut(s)	160, 429
Bsp143I	GATC	3 cut(s)	43, 135, 222
BspACI	CCGC	1 cut(s)	174
BspANI	GGCC	3 cut(s)	173, 199, 216
BspCNI	CTCAG	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	330
BspPI	GGATC	2 cut(s)	143, 217
BspT107I	GGYRCC	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	3 cut(s)	43, 135, 222
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	2 cut(s)	18, 51
Bst6I	CTCTTC	2 cut(s)	294, 387
BstAPI	GCANNNNNTGC	1 cut(s)	548
BstC8I	GCNNGC	4 cut(s)	23, 56, 201, 277
BstDEI	CTNAG	1 cut(s)	458
BstF5I	GGATG	2 cut(s)	99, 247
BstKTI	GATC	3 cut(s)	46, 138, 225
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	3 cut(s)	43, 135, 222
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 64, 548
BstNI	CCWGG	2 cut(s)	18, 51
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	2 cut(s)	16, 49
BstSLI	GKGCMC	1 cut(s)	429
BstX2I	RGATCY	1 cut(s)	135
BstYI	RGATCY	1 cut(s)	135
BsuRI	GGCC	3 cut(s)	173, 199, 216
BtsCI	GGATG	2 cut(s)	99, 247
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	4 cut(s)	23, 56, 201, 277
Cfr13I	GGNCC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	559
CviAII	CATG	3 cut(s)	55, 364, 545
CviQI	GTAC	1 cut(s)	559
DdeI	CTNAG	1 cut(s)	458
DpnI	GATC	3 cut(s)	45, 137, 224
DpnII	GATC	3 cut(s)	43, 135, 222
EaeI	YGGCCR	1 cut(s)	197
Eam1104I	CTCTTC	2 cut(s)	294, 387
EarI	CTCTTC	2 cut(s)	294, 387
Eco130I	CCWWGG	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	80, 213
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	16, 49
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	3 cut(s)	58, 367, 548
FaiI	YATR	8 cut(s)	56, 196, 221, 270, 283, 348, 365, 546
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	3 cut(s)	54, 363, 544
FblI	GTMKAC	1 cut(s)	505
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	2 cut(s)	106, 254
Fsp4HI	GCNGC	1 cut(s)	174
FspBI	CTAG	3 cut(s)	161, 317, 509
GluI	GCNGC	1 cut(s)	174
GsaI	CCCAGC	1 cut(s)	83
HaeIII	GGCC	3 cut(s)	173, 199, 216
HapII	CCGG	1 cut(s)	68
Hin1II	CATG	3 cut(s)	58, 367, 548
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	4 cut(s)	13, 103, 485, 568
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	2 cut(s)	22, 308
Hpy166II	GTNNAC	2 cut(s)	427, 506
Hpy188I	TCNGA	4 cut(s)	155, 249, 446, 454
Hpy8I	GTNNAC	2 cut(s)	427, 506
HpyAV	CCTTC	1 cut(s)	237
HpyCH4V	TGCA	4 cut(s)	97, 306, 427, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 64, 548
HpyF3I	CTNAG	1 cut(s)	458
Hsp92II	CATG	3 cut(s)	58, 367, 548
Kzo9I	GATC	3 cut(s)	43, 135, 222
LmnI	GCTCC	1 cut(s)	272
LweI	GCATC	4 cut(s)	84, 315, 458, 538
MaeI	CTAG	3 cut(s)	161, 317, 509
MaeIII	GTNAC	4 cut(s)	74, 511, 521, 565
MalI	GATC	3 cut(s)	45, 137, 224
MboI	GATC	3 cut(s)	43, 135, 222
MboII	GAAGA	3 cut(s)	73, 311, 404
MfeI	CAATTG	1 cut(s)	552
MflI	RGATCY	1 cut(s)	135
MhlI	GDGCHC	2 cut(s)	160, 429
MlsI	TGGCCA	1 cut(s)	199
MluCI	AATT	2 cut(s)	464, 552
MluNI	TGGCCA	1 cut(s)	199
MlyI	GAGTC	1 cut(s)	562
MnlI	CCTC	4 cut(s)	84, 163, 257, 300
Mox20I	TGGCCA	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	199
MseI	TTAA	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	199
MspA1I	CMGCKG	1 cut(s)	529
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	2 cut(s)	18, 51
MunI	CAATTG	1 cut(s)	552
MvaI	CCWGG	2 cut(s)	18, 51
MwoI	GCNNNNNNNGC	3 cut(s)	55, 64, 548
NdeII	GATC	3 cut(s)	43, 135, 222
NlaIII	CATG	3 cut(s)	58, 367, 548
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	2 cut(s)	511, 565
NspI	RCATGY	1 cut(s)	58
PaeI	GCATGC	1 cut(s)	58
PfeI	GAWTC	3 cut(s)	13, 103, 485
PkrI	GCNGC	1 cut(s)	175
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
Psp6I	CCWGG	2 cut(s)	16, 49
PspFI	CCCAGC	1 cut(s)	79
PspGI	CCWGG	2 cut(s)	16, 49
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	135
PvuII	CAGCTG	1 cut(s)	529
RsaI	GTAC	1 cut(s)	560
RsaNI	GTAC	1 cut(s)	559
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	3 cut(s)	43, 135, 222
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	1 cut(s)	562
ScrFI	CCNGG	2 cut(s)	18, 51
SduI	GDGCHC	2 cut(s)	160, 429
SetI	ASST	6 cut(s)	85, 195, 235, 334, 531, 538
SfaNI	GCATC	4 cut(s)	84, 315, 458, 538
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
SpeI	ACTAGT	1 cut(s)	508
SphI	GCATGC	1 cut(s)	58
Sse9I	AATT	2 cut(s)	464, 552
SsiI	CCGC	1 cut(s)	174
SspMI	CTAG	3 cut(s)	161, 317, 509
StyD4I	CCNGG	2 cut(s)	16, 49
StyI	CCWWGG	1 cut(s)	6
TaqI	TCGA	1 cut(s)	33
TasI	AATT	2 cut(s)	464, 552
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	3 cut(s)	13, 103, 485
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	1 cut(s)	345
TseFI	GTSAC	2 cut(s)	511, 565
Tsp45I	GTSAC	2 cut(s)	511, 565
TspDTI	ATGAA	1 cut(s)	489
TspRI	CASTG	1 cut(s)	345
VneI	GTGCAC	1 cut(s)	425
XceI	RCATGY	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	505
XspI	CTAG	3 cut(s)	161, 317, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.