Rmu_sc0033413.1_g000001

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033413.1
OG0022598
Physical Location & Seq
Reverse (-)
2 .. 411
410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033413.1_g000001.1.cds

Sequence Viewer

Length: 254 bp
atgcccttggtgattcctggcttgcctccactcgacattgctgatctgcctggcatgcttaagaagccggatagtaacccagcttacttgaggatgcaactgaatcagtattcaaacttggacaaggctgattggatctttggaaatactttccgagcactagaaagcgaggctgccaaaggagtagcaaagctatggccagcgaagttgataggccctatgatcccttcagcttatttggatggtcagattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009072 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009987 GO:0010029 GO:0010030 GO:0010817 GO:0016043 GO:0016143 GO:0016144 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032787 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042445 GO:0042537 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045229 GO:0046482 GO:0046527 GO:0047251 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051179 GO:0051239 GO:0051240 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080002 GO:0080043 GO:0080044 GO:0090704 GO:0098542 GO:1900140 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901657 GO:1901659 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

84

Amino Acids

9.21

Weight (kDa)

6.07

Isoelectric Point (pI)

26.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022598)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0314031
rosa_multiflora Rmu_sc0033412.1_g000001 Rmu_sc0033413.1_g000001
rosa_samantha Rh1AG008300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 143, 217
AcoI YGGCCR 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 213
AflII CTTAAG 1 cut(s) 59
AgsI TTSAA 1 cut(s) 114
AjnI CCWGG 2 cut(s) 16, 49
AluBI AGCT 3 cut(s) 83, 193, 233
AluI AGCT 3 cut(s) 83, 193, 233
Alw21I GWGCWC 1 cut(s) 160
AlwI GGATC 2 cut(s) 143, 217
AoxI GGCC 2 cut(s) 197, 214
ApeKI GCWGC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 22
BalI TGGCCA 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 160
BccI CCATC 1 cut(s) 236
BciT130I CCWGG 2 cut(s) 18, 51
BfaI CTAG 1 cut(s) 161
BfrI CTTAAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
Bme1390I CCNGG 2 cut(s) 18, 51
BmgT120I GGNCC 1 cut(s) 215
BmrFI CCNGG 2 cut(s) 18, 51
BmsI GCATC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 6
Bse3DI GCAATG 1 cut(s) 36
BseBI CCWGG 2 cut(s) 18, 51
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 2 cut(s) 99, 247
BseMI GCAATG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 160
BseYI CCCAGC 1 cut(s) 79
BshFI GGCC 2 cut(s) 199, 216
BsiHKAI GWGCWC 1 cut(s) 160
BsiSI CCGG 1 cut(s) 68
BsnI GGCC 2 cut(s) 199, 216
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 3 cut(s) 43, 135, 222
BspANI GGCC 2 cut(s) 199, 216
BspPI GGATC 2 cut(s) 143, 217
BspTI CTTAAG 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 3 cut(s) 43, 135, 222
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 2 cut(s) 18, 51
BstAFI CTTAAG 1 cut(s) 59
BstC8I GCNNGC 3 cut(s) 23, 56, 201
BstF5I GGATG 2 cut(s) 99, 247
BstKTI GATC 3 cut(s) 46, 138, 225
BstMBI GATC 3 cut(s) 43, 135, 222
BstMWI GCNNNNNNNGC 2 cut(s) 55, 64
BstNI CCWGG 2 cut(s) 18, 51
BstNSI RCATGY 1 cut(s) 58
BstSCI CCNGG 2 cut(s) 16, 49
BstV1I GCAGC 1 cut(s) 160
BstX2I RGATCY 1 cut(s) 135
BstYI RGATCY 1 cut(s) 135
BsuRI GGCC 2 cut(s) 199, 216
BtsCI GGATG 2 cut(s) 99, 247
Cac8I GCNNGC 3 cut(s) 23, 56, 201
Cfr13I GGNCC 1 cut(s) 215
CviAII CATG 1 cut(s) 55
CviJI RGCY 9 cut(s) 21, 67, 83, 128, 173, 193, 199, 216, 233
CviKI_1 RGCY 9 cut(s) 21, 67, 83, 128, 173, 193, 199, 216, 233
DpnI GATC 3 cut(s) 45, 137, 224
DpnII GATC 3 cut(s) 43, 135, 222
EaeI YGGCCR 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 215
EcoRII CCWGG 2 cut(s) 16, 49
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 1 cut(s) 58
FaiI YATR 3 cut(s) 56, 196, 221
FatI CATG 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 174
FokI GGATG 1 cut(s) 106
Fsp4HI GCNGC 1 cut(s) 174
FspBI CTAG 1 cut(s) 161
GluI GCNGC 1 cut(s) 174
GsaI CCCAGC 1 cut(s) 83
HaeIII GGCC 2 cut(s) 199, 216
HapII CCGG 1 cut(s) 68
Hin1II CATG 1 cut(s) 58
HinfI GANTC 2 cut(s) 13, 103
HpaII CCGG 1 cut(s) 68
HphI GGTGA 1 cut(s) 22
Hpy188I TCNGA 2 cut(s) 155, 249
HpyAV CCTTC 1 cut(s) 237
HpyCH4V TGCA 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 64
Hsp92II CATG 1 cut(s) 58
Kzo9I GATC 3 cut(s) 43, 135, 222
LpnPI CCDG 7 cut(s) 3, 30, 36, 63, 81, 93, 213
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 1 cut(s) 84
MaeI CTAG 1 cut(s) 161
MaeIII GTNAC 1 cut(s) 74
MalI GATC 3 cut(s) 45, 137, 224
MboI GATC 3 cut(s) 43, 135, 222
MflI RGATCY 1 cut(s) 135
MhlI GDGCHC 1 cut(s) 160
MlsI TGGCCA 1 cut(s) 199
MluNI TGGCCA 1 cut(s) 199
MnlI CCTC 3 cut(s) 36, 84, 163
Mox20I TGGCCA 1 cut(s) 199
MscI TGGCCA 1 cut(s) 199
MseI TTAA 2 cut(s) 60, 252
Msp20I TGGCCA 1 cut(s) 199
MspCI CTTAAG 1 cut(s) 59
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 2 cut(s) 18, 51
MvaI CCWGG 2 cut(s) 18, 51
MwoI GCNNNNNNNGC 2 cut(s) 55, 64
NdeII GATC 3 cut(s) 43, 135, 222
NlaIII CATG 1 cut(s) 58
NspI RCATGY 1 cut(s) 58
PaeI GCATGC 1 cut(s) 58
PfeI GAWTC 2 cut(s) 13, 103
PkrI GCNGC 1 cut(s) 175
Psp6I CCWGG 2 cut(s) 16, 49
PspFI CCCAGC 1 cut(s) 79
PspGI CCWGG 2 cut(s) 16, 49
PspPI GGNCC 1 cut(s) 215
PsuI RGATCY 1 cut(s) 135
SaqAI TTAA 2 cut(s) 60, 252
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 3 cut(s) 43, 135, 222
Sau96I GGNCC 1 cut(s) 215
ScrFI CCNGG 2 cut(s) 18, 51
SduI GDGCHC 1 cut(s) 160
SetI ASST 3 cut(s) 85, 195, 235
SfaNI GCATC 1 cut(s) 84
SmlI CTYRAG 2 cut(s) 59, 88
SmoI CTYRAG 2 cut(s) 59, 88
SphI GCATGC 1 cut(s) 58
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 2 cut(s) 16, 49
StyI CCWWGG 1 cut(s) 6
TaqI TCGA 1 cut(s) 33
TfiI GAWTC 2 cut(s) 13, 103
Tru1I TTAA 2 cut(s) 60, 252
Tru9I TTAA 2 cut(s) 60, 252
TseI GCWGC 1 cut(s) 173
Vha464I CTTAAG 1 cut(s) 59
XceI RCATGY 1 cut(s) 58
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.