RchiOBHm_Chr1g0315121

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
2334970 .. 2335665
696 bp
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UTR
Exon/CDS
Intron
PRQ54565

Sequence Viewer

Length: 153 bp
ATGTTGGCGCACATCTCGGACCCACCTATGGTATCCAGCGCCAGTTGTCTCGAGTGGAACAAAGTTCAACTTGTTCAGGTAACTCATCCTGAAAAACAACACAAGATTAGGGTTAGTTTCGGAGCGAAAAAGGCTACCACGAAAAACTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

50

Amino Acids

5.64

Weight (kDa)

9.66

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020485)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 50
AspLEI GCGC 2 cut(s) 10, 41
AspS9I GGNCC 1 cut(s) 19
AvaI CYCGRG 1 cut(s) 50
AvaII GGWCC 1 cut(s) 19
BciVI GTATCC 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 53
BfoI RGCGCY 1 cut(s) 42
BfuI GTATCC 1 cut(s) 43
Bme18I GGWCC 1 cut(s) 19
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 42
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 42
BsiHKCI CYCGRG 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 21
BsrI ACTGG 1 cut(s) 42
BstF5I GGATG 1 cut(s) 85
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 2 cut(s) 10, 41
BstMAI GTCTC 1 cut(s) 53
BstMWI GCNNNNNNNGC 1 cut(s) 131
BsuI GTATCC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 85
CfoI GCGC 2 cut(s) 10, 41
Cfr13I GGNCC 1 cut(s) 19
CviJI RGCY 1 cut(s) 134
CviKI_1 RGCY 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 50
FaiI YATR 1 cut(s) 29
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FokI GGATG 1 cut(s) 72
GlaI GCGC 2 cut(s) 9, 40
HaeII RGCGCY 1 cut(s) 42
HhaI GCGC 2 cut(s) 10, 41
Hin6I GCGC 2 cut(s) 8, 39
HinP1I GCGC 2 cut(s) 8, 39
Hpy188I TCNGA 2 cut(s) 19, 122
Hpy188III TCNNGA 2 cut(s) 50, 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HspAI GCGC 2 cut(s) 8, 39
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 4 cut(s) 49, 55, 62, 102
MaeIII GTNAC 1 cut(s) 79
MseI TTAA 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 131
NlaIV GGNNCC 1 cut(s) 21
PaeR7I CTCGAG 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 1 cut(s) 19
SaqAI TTAA 1 cut(s) 151
Sau96I GGNCC 1 cut(s) 19
SetI ASST 2 cut(s) 28, 81
Sfr274I CTCGAG 1 cut(s) 50
SgeI CNNG 9 cut(s) 28, 48, 54, 62, 64, 83, 89, 101, 115
SinI GGWCC 1 cut(s) 19
SlaI CTCGAG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
TaqI TCGA 1 cut(s) 51
Tru1I TTAA 1 cut(s) 151
Tru9I TTAA 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 19
XhoI CTCGAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.