Rroxscaffold_3G00230230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0020485
Physical Location & Seq
Forward (+)
14980479 .. 15006288
25810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00230230.1

Sequence Viewer

Length: 789 bp
ATGCTCATAACTGCTCACTCGCAACTTCTTTTTTTGATCTGTCAGCTCTCACACTCTCGTGGCTATGACCTACATCAACTAATATGCGGCGGATATCACGAACCCACCGTGATATTCGGAGCCGGTTGTTCCCAAGGGAGCAAAGTCCAATTTGTTCGGGCTACTCATCCCGAAAGAGAAGAAGAAATTAGGCGGTTTGTGCTCGAGTGGTTGAAGGCTGAGTTTGTGTACAAGAGGTCGAGCTCTCACACTCTCTTGGCTATGAGCTGTATCAATAATGTAAAATATTATAAAAGTTTATCTCCTCGTGGTTCAGCTCCCCTTACGGAAGTCGACAGCCACCACCGCTACAACAACCGCTGCAGCAACAATTCGGGTACCCGCCCCAGGCCCAACATTTTGACGCGCCTCCATTCGGACACCCACCCTTTCCCCTACCAGCCCCACTTGCAGCAGAAACCGCCGCCGCAGGTTCTCTCTTACGCCCCGCCGCCTCACCCTCACCACCTACCCCCTTTGCCGGCCTTCGCTCCCCACCTCCCCATGTCTCCCCCGCCTTTCCACGCTGGCCCTCCTCAGCCTTCCTCCGGTGGCTGGTCCTCCATCCGACCCGGAGCTCCACAAACGGATCGACAAGCTCGTCAAGTACTCCGCCAACAGCGGACCCATCTGATTATCTCTAGAAGACAACGTCGGCTGCTTGGAAACAATAATGCTGTAAATGGGTTCATCGTCACCGTCACTGCGATGGCTAATGCGTATTTAGAGAAATTGTTTTATGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

29.66

Weight (kDa)

9.89

Isoelectric Point (pI)

64.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020485)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0315121 RchiOBHm_Chr2g0084231
rosa_multiflora Rmu_sc0006952.1_g000017
rosa_roxburghii Rroxscaffold_2G00115580 Rroxscaffold_3G00230230
rosa_samantha Rh6AG517800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
AasI GACNNNNNNGTC 1 cut(s) 639
Acc36I ACCTGC 1 cut(s) 460
Acc65I GGTACC 1 cut(s) 377
AccB1I GGYRCC 1 cut(s) 377
AccI GTMKAC 1 cut(s) 333
AccII CGCG 1 cut(s) 406
AclWI GGATC 1 cut(s) 636
AfaI GTAC 3 cut(s) 230, 379, 648
AfiI CCNNNNNNNGG 5 cut(s) 387, 415, 520, 587, 594
AgsI TTSAA 1 cut(s) 214
AjnI CCWGG 1 cut(s) 386
AleI CACNNNNGTG 1 cut(s) 57
AluBI AGCT 6 cut(s) 46, 243, 267, 317, 617, 638
AluI AGCT 6 cut(s) 46, 243, 267, 317, 617, 638
Alw21I GWGCWC 3 cut(s) 204, 245, 619
Alw26I GTCTC 1 cut(s) 552
AlwI GGATC 1 cut(s) 636
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 3 cut(s) 389, 522, 568
ApeKI GCWGC 4 cut(s) 360, 363, 451, 697
Asp718I GGTACC 1 cut(s) 377
AspLEI GCGC 1 cut(s) 408
AspS9I GGNCC 4 cut(s) 390, 569, 597, 663
AsuC2I CCSGG 1 cut(s) 612
AsuHPI GGTGA 3 cut(s) 488, 494, 727
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 2 cut(s) 597, 663
BanI GGYRCC 1 cut(s) 377
BanII GRGCYC 2 cut(s) 245, 619
BauI CACGAG 2 cut(s) 57, 306
BbsI GAAGAC 1 cut(s) 691
Bbv12I GWGCWC 3 cut(s) 204, 245, 619
BbvCI CCTCAGC 1 cut(s) 576
BbvI GCAGC 4 cut(s) 347, 375, 463, 684
BccI CCATC 3 cut(s) 611, 675, 742
BciT130I CCWGG 1 cut(s) 388
BcnI CCSGG 1 cut(s) 612
BcoDI GTCTC 1 cut(s) 552
BfaI CTAG 1 cut(s) 681
BfmI CTRYAG 1 cut(s) 361
BfuAI ACCTGC 1 cut(s) 460
BisI GCNGC 8 cut(s) 88, 361, 364, 452, 464, 467, 491, 698
BlsI GCNGC 8 cut(s) 89, 362, 365, 453, 465, 468, 492, 699
BmcAI AGTACT 1 cut(s) 648
Bme1390I CCNGG 2 cut(s) 388, 612
Bme18I GGWCC 2 cut(s) 597, 663
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 4 cut(s) 390, 569, 597, 663
BmiI GGNNCC 3 cut(s) 121, 379, 665
BmrFI CCNGG 2 cut(s) 388, 612
BpiI GAAGAC 1 cut(s) 691
Bpu10I CCTNAGC 1 cut(s) 576
BpuMI CCSGG 1 cut(s) 612
BsaJI CCNNGG 2 cut(s) 133, 386
BsaWI WCCGGW 1 cut(s) 587
Bsc4I CCNNNNNNNGG 5 cut(s) 387, 415, 520, 587, 594
Bse118I RCCGGY 2 cut(s) 122, 520
BseBI CCWGG 1 cut(s) 388
BseDI CCNNGG 2 cut(s) 133, 386
BseGI GGATG 2 cut(s) 166, 603
BseLI CCNNNNNNNGG 5 cut(s) 387, 415, 520, 587, 594
BseMII CTCAG 2 cut(s) 210, 590
BseRI GAGGAG 2 cut(s) 294, 564
BseXI GCAGC 4 cut(s) 347, 375, 463, 684
Bsh1236I CGCG 1 cut(s) 406
BshFI GGCC 3 cut(s) 391, 524, 570
BshNI GGYRCC 1 cut(s) 377
BsiHKAI GWGCWC 3 cut(s) 204, 245, 619
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 4 cut(s) 123, 521, 588, 612
BslI CCNNNNNNNGG 5 cut(s) 387, 415, 520, 587, 594
BsmAI GTCTC 1 cut(s) 552
BsnI GGCC 3 cut(s) 391, 524, 570
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 3 cut(s) 204, 245, 619
Bsp1407I TGTACA 1 cut(s) 228
Bsp143I GATC 2 cut(s) 36, 628
BspANI GGCC 3 cut(s) 391, 524, 570
BspCNI CTCAG 2 cut(s) 211, 589
BspFNI CGCG 1 cut(s) 406
BspLI GGNNCC 3 cut(s) 121, 379, 665
BspMAI CTGCAG 1 cut(s) 365
BspMI ACCTGC 1 cut(s) 460
BspPI GGATC 1 cut(s) 636
BspT107I GGYRCC 1 cut(s) 377
BsrFI RCCGGY 2 cut(s) 122, 520
BsrGI TGTACA 1 cut(s) 228
BssAI RCCGGY 2 cut(s) 122, 520
BssECI CCNNGG 2 cut(s) 133, 386
BssMI GATC 2 cut(s) 36, 628
BssSI CACGAG 2 cut(s) 57, 306
BssT1I CCWWGG 1 cut(s) 133
Bst2BI CACGAG 2 cut(s) 57, 306
Bst2UI CCWGG 1 cut(s) 388
Bst4CI ACNGT 2 cut(s) 109, 739
BstAUI TGTACA 1 cut(s) 228
BstC8I GCNNGC 2 cut(s) 522, 568
BstDEI CTNAG 2 cut(s) 219, 576
BstF5I GGATG 2 cut(s) 166, 603
BstFNI CGCG 1 cut(s) 406
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 2 cut(s) 39, 631
BstMAI GTCTC 1 cut(s) 552
BstMBI GATC 2 cut(s) 36, 628
BstMWI GCNNNNNNNGC 4 cut(s) 199, 345, 448, 460
BstNI CCWGG 1 cut(s) 388
BstSCI CCNGG 2 cut(s) 386, 610
BstSFI CTRYAG 1 cut(s) 361
BstUI CGCG 1 cut(s) 406
BstV1I GCAGC 4 cut(s) 347, 375, 463, 684
BstV2I GAAGAC 1 cut(s) 691
BsuRI GGCC 3 cut(s) 391, 524, 570
BtgZI GCGATG 1 cut(s) 761
BtsCI GGATG 2 cut(s) 166, 603
BtsI GCAGTG 1 cut(s) 741
BtsIMutI CAGTG 1 cut(s) 741
BveI ACCTGC 1 cut(s) 460
Cac8I GCNNGC 2 cut(s) 522, 568
CfoI GCGC 1 cut(s) 408
Cfr10I RCCGGY 2 cut(s) 122, 520
Cfr13I GGNCC 4 cut(s) 390, 569, 597, 663
CseI GACGC 1 cut(s) 412
Csp6I GTAC 3 cut(s) 229, 378, 647
CviAII CATG 1 cut(s) 544
CviQI GTAC 3 cut(s) 229, 378, 647
DdeI CTNAG 2 cut(s) 219, 576
DpnI GATC 2 cut(s) 38, 630
DpnII GATC 2 cut(s) 36, 628
DrdI GACNNNNNNGTC 1 cut(s) 639
DseDI GACNNNNNNGTC 1 cut(s) 639
EciI GGCGGA 2 cut(s) 105, 641
Ecl136II GAGCTC 2 cut(s) 243, 617
Eco130I CCWWGG 1 cut(s) 133
Eco24I GRGCYC 2 cut(s) 245, 619
Eco32I GATATC 1 cut(s) 95
Eco47I GGWCC 2 cut(s) 597, 663
Eco53kI GAGCTC 2 cut(s) 243, 617
Eco88I CYCGRG 1 cut(s) 203
EcoICRI GAGCTC 2 cut(s) 243, 617
EcoRII CCWGG 1 cut(s) 386
EcoRV GATATC 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 133
EcoT38I GRGCYC 2 cut(s) 245, 619
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 1 cut(s) 547
FaiI YATR 7 cut(s) 8, 66, 85, 263, 291, 545, 780
FatI CATG 1 cut(s) 543
FauI CCCGC 3 cut(s) 389, 495, 561
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 8 cut(s) 88, 361, 364, 452, 464, 467, 491, 698
FokI GGATG 2 cut(s) 153, 590
FriOI GRGCYC 2 cut(s) 245, 619
Fsp4HI GCNGC 8 cut(s) 88, 361, 364, 452, 464, 467, 491, 698
FspBI CTAG 1 cut(s) 681
GlaI GCGC 1 cut(s) 407
GluI GCNGC 8 cut(s) 88, 361, 364, 452, 464, 467, 491, 698
HaeIII GGCC 3 cut(s) 391, 524, 570
HapII CCGG 4 cut(s) 123, 521, 588, 612
HgaI GACGC 1 cut(s) 412
HhaI GCGC 1 cut(s) 408
Hin1II CATG 1 cut(s) 547
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HpaII CCGG 4 cut(s) 123, 521, 588, 612
HphI GGTGA 3 cut(s) 488, 494, 727
Hpy166II GTNNAC 2 cut(s) 229, 334
Hpy188I TCNGA 4 cut(s) 119, 418, 608, 672
Hpy188III TCNNGA 3 cut(s) 98, 170, 681
Hpy8I GTNNAC 2 cut(s) 229, 334
Hpy99I CGWCG 1 cut(s) 696
HpyAV CCTTC 3 cut(s) 208, 535, 591
HpyCH4III ACNGT 2 cut(s) 109, 739
HpyCH4IV ACGT 1 cut(s) 691
HpyCH4V TGCA 2 cut(s) 363, 451
HpyF10VI GCNNNNNNNGC 4 cut(s) 199, 345, 448, 460
HpyF3I CTNAG 2 cut(s) 219, 576
HpySE526I ACGT 1 cut(s) 691
Hsp92II CATG 1 cut(s) 547
HspAI GCGC 1 cut(s) 406
KpnI GGTACC 1 cut(s) 381
KroI GCCGGC 1 cut(s) 520
KroNI GCCGGC 1 cut(s) 522
Kzo9I GATC 2 cut(s) 36, 628
LmnI GCTCC 6 cut(s) 119, 138, 322, 535, 614, 622
Lsp1109I GCAGC 4 cut(s) 347, 375, 463, 684
MaeI CTAG 1 cut(s) 681
MaeII ACGT 1 cut(s) 691
MaeIII GTNAC 2 cut(s) 733, 739
MalI GATC 2 cut(s) 38, 630
MboI GATC 2 cut(s) 36, 628
MboII GAAGA 3 cut(s) 191, 194, 696
MhlI GDGCHC 3 cut(s) 204, 245, 619
MluCI AATT 4 cut(s) 149, 186, 370, 770
MmeI TCCRAC 1 cut(s) 631
MroNI GCCGGC 1 cut(s) 520
MslI CAYNNNNRTG 2 cut(s) 57, 746
MspA1I CMGCKG 2 cut(s) 360, 661
MspI CCGG 4 cut(s) 123, 521, 588, 612
MspR9I CCNGG 2 cut(s) 388, 612
MvaI CCWGG 1 cut(s) 388
MvnI CGCG 1 cut(s) 406
MwoI GCNNNNNNNGC 4 cut(s) 199, 345, 448, 460
NaeI GCCGGC 1 cut(s) 522
NciI CCSGG 1 cut(s) 612
NdeII GATC 2 cut(s) 36, 628
NgoMIV GCCGGC 1 cut(s) 520
NlaIII CATG 1 cut(s) 547
NlaIV GGNNCC 3 cut(s) 121, 379, 665
NmuCI GTSAC 2 cut(s) 733, 739
OliI CACNNNNGTG 1 cut(s) 57
PaeR7I CTCGAG 1 cut(s) 203
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 637
PdiI GCCGGC 1 cut(s) 522
PflFI GACNNNGTC 1 cut(s) 690
PkrI GCNGC 8 cut(s) 89, 362, 365, 453, 465, 468, 492, 699
PsiI TTATAA 1 cut(s) 291
Psp124BI GAGCTC 2 cut(s) 245, 619
Psp6I CCWGG 1 cut(s) 386
PspGI CCWGG 1 cut(s) 386
PspN4I GGNNCC 3 cut(s) 121, 379, 665
PspPI GGNCC 4 cut(s) 390, 569, 597, 663
PspXI VCTCGAGB 1 cut(s) 203
PstI CTGCAG 1 cut(s) 365
PsyI GACNNNGTC 1 cut(s) 690
RsaI GTAC 3 cut(s) 230, 379, 648
RsaNI GTAC 3 cut(s) 229, 378, 647
RseI CAYNNNNRTG 2 cut(s) 57, 746
SacI GAGCTC 2 cut(s) 245, 619
SalI GTCGAC 1 cut(s) 332
SatI GCNGC 8 cut(s) 88, 361, 364, 452, 464, 467, 491, 698
Sau3AI GATC 2 cut(s) 36, 628
Sau96I GGNCC 4 cut(s) 390, 569, 597, 663
ScaI AGTACT 1 cut(s) 648
ScrFI CCNGG 2 cut(s) 388, 612
SduI GDGCHC 3 cut(s) 204, 245, 619
SfcI CTRYAG 1 cut(s) 361
Sfr274I CTCGAG 1 cut(s) 203
SinI GGWCC 2 cut(s) 597, 663
SlaI CTCGAG 1 cut(s) 203
SmiMI CAYNNNNRTG 2 cut(s) 57, 746
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 4 cut(s) 149, 186, 370, 770
SspI AATATT 1 cut(s) 287
SspMI CTAG 1 cut(s) 681
SstI GAGCTC 2 cut(s) 245, 619
StyD4I CCNGG 2 cut(s) 386, 610
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 2 cut(s) 109, 739
TaiI ACGT 1 cut(s) 694
TaqI TCGA 4 cut(s) 204, 239, 333, 631
TasI AATT 4 cut(s) 149, 186, 370, 770
TatI WGTACW 2 cut(s) 228, 646
TauI GCSGC 4 cut(s) 90, 466, 469, 493
TscAI CASTG 1 cut(s) 748
TseFI GTSAC 2 cut(s) 733, 739
TseI GCWGC 4 cut(s) 360, 363, 451, 697
Tsp45I GTSAC 2 cut(s) 733, 739
TspDTI ATGAA 1 cut(s) 718
TspGWI ACGGA 2 cut(s) 341, 641
TspRI CASTG 1 cut(s) 748
Tth111I GACNNNGTC 1 cut(s) 690
VpaK11BI GGWCC 2 cut(s) 597, 663
XbaI TCTAGA 1 cut(s) 680
XhoI CTCGAG 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 333
XspI CTAG 1 cut(s) 681
ZrmI AGTACT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.