Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018945

Physical Location & Seq

Genomic Coordinates Forward (+)

9889432 .. 9897483

Gene Structure 8052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55254

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCAAGAGCTCCATGTTGTGACAAAGCTAATGTCAAAAAAGGACAGTGGTCTCCTGAGGAAGATAAAGCTAAGTCTTGGGACTCATGGAACTGGTGGCAATTGGATTCATCTGCCACAAAAAGCTGGCTTTTAGATTCTTCAACAAGAATCAAGTTGACCACATTAAGGGTGATCAGAACACGTGGTTTTCTAATAAAGAAGCCAAGCTGCCGAAATTGCAGAAAGTCACCCCTCAATTTGGAACTTTGTTTCTTCCATGACTTGGCATCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009785 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0030522 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

92

Amino Acids

10.72

Weight (kDa)

9.47

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018945)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322551 RchiOBHm_Chr4g0408321
rosa_roxburghii	Rroxscaffold_1G00075120
rosa_samantha	Rh1DG171700 Rh2AG641800 Rh4CG157200
rosa_wichuraiana	Rw1G039060 Rw2G048470 Rw4G015700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	265
AcvI	CACGTG	1 cut(s)	185
AfiI	CCNNNNNNNGG	3 cut(s)	168, 241, 265
AflIII	ACRYGT	1 cut(s)	182
AgsI	TTSAA	1 cut(s)	144
AluBI	AGCT	5 cut(s)	11, 29, 71, 126, 210
AluI	AGCT	5 cut(s)	11, 29, 71, 126, 210
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	210
ArsI	GACNNNNNNTTYG	2 cut(s)	18, 50
AsuHPI	GGTGA	2 cut(s)	184, 222
AxyI	CCTNAGG	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	13
BbrPI	CACGTG	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	197
BclI	TGATCA	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	57
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
BoxI	GACNNNNGTC	1 cut(s)	49
BsaAI	YACGTR	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	3 cut(s)	168, 241, 265
Bse1I	ACTGG	1 cut(s)	98
Bse21I	CCTNAGG	1 cut(s)	57
BseLI	CCNNNNNNNGG	3 cut(s)	168, 241, 265
BseMII	CTCAG	2 cut(s)	48, 264
BseNI	ACTGG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	13
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	3 cut(s)	168, 241, 265
BsmAI	GTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	174
BspCNI	CTCAG	2 cut(s)	49, 265
BspTNI	GGTCTC	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	98
BssMI	GATC	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	48
BstBAI	YACGTR	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	3 cut(s)	57, 72, 273
BstKTI	GATC	1 cut(s)	177
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstPAI	GACNNNNGTC	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	197
Bsu36I	CCTNAGG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	128
CviAII	CATG	3 cut(s)	15, 87, 260
CviJI	RGCY	7 cut(s)	11, 29, 71, 126, 130, 205, 210
CviKI_1	RGCY	7 cut(s)	11, 29, 71, 126, 130, 205, 210
DdeI	CTNAG	3 cut(s)	57, 72, 273
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
Ecl136II	GAGCTC	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	11
Eco72I	CACGTG	1 cut(s)	185
Eco81I	CCTNAGG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	13
FaeI	CATG	3 cut(s)	18, 90, 263
FaiI	YATR	3 cut(s)	16, 88, 261
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	3 cut(s)	14, 86, 259
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	211
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	211
GluI	GCNGC	1 cut(s)	211
Hin1II	CATG	3 cut(s)	18, 90, 263
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HinfI	GANTC	4 cut(s)	83, 107, 137, 150
HphI	GGTGA	2 cut(s)	184, 222
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	2 cut(s)	179, 274
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	159
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpyF3I	CTNAG	3 cut(s)	57, 72, 273
HpySE526I	ACGT	1 cut(s)	184
Hsp92II	CATG	3 cut(s)	18, 90, 263
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	3 cut(s)	69, 79, 112
Lsp1109I	GCAGC	1 cut(s)	197
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	2 cut(s)	20, 228
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	3 cut(s)	74, 132, 247
MfeI	CAATTG	1 cut(s)	101
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	3 cut(s)	101, 217, 238
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	2 cut(s)	52, 245
MseI	TTAA	1 cut(s)	167
MunI	CAATTG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	219
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	3 cut(s)	18, 90, 263
NmuCI	GTSAC	2 cut(s)	20, 228
PfeI	GAWTC	3 cut(s)	107, 137, 150
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	212
PleI	GAGTC	1 cut(s)	77
PmaCI	CACGTG	1 cut(s)	185
PmlI	CACGTG	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	77
Ppu21I	YACGTR	1 cut(s)	185
PshAI	GACNNNNGTC	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	13
PspCI	CACGTG	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	1 cut(s)	174
SchI	GAGTC	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	6 cut(s)	13, 31, 73, 128, 187, 212
Sse9I	AATT	3 cut(s)	101, 217, 238
SstI	GAGCTC	1 cut(s)	13
TaaI	ACNGT	1 cut(s)	48
TaiI	ACGT	1 cut(s)	187
TasI	AATT	3 cut(s)	101, 217, 238
TfiI	GAWTC	3 cut(s)	107, 137, 150
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TscAI	CASTG	1 cut(s)	53
TseFI	GTSAC	2 cut(s)	20, 228
TseI	GCWGC	1 cut(s)	210
Tsp45I	GTSAC	2 cut(s)	20, 228
TspDTI	ATGAA	1 cut(s)	99
TspRI	CASTG	1 cut(s)	53
Van91I	CCANNNNNTGG	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.