Rroxscaffold_1G00075120

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0018945
Physical Location & Seq
Reverse (-)
95894571 .. 95903459
8889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00075120.1

Sequence Viewer

Length: 861 bp
ATGGCAAGAGCTCCATGTTGTGACAAAGCTAATGTCAAAAAAGGACAGTGGTCTCCTGAGGAAGATAAAACTAAGTCTTGGGACTCATGGAACTGGTGGCAATTGGATTCATCTGCCACAAAAAGCTGGGTGATCAGAACACGTGGTTTTCTAATAAAGAAGCCAAGCTGCCGAAATTGCAGAAAGTCACCCCTCAATTTGGAATTCATCTTTGAAAAGAACATTCCCAAGATTATTGTTCTGCATTTTGATAATGTCATTCGTGTTGCTTATCGGATAGTTGTAGCATGCGGATCCATATTCTTTTGTTTAGTTTATACTGATAAAGCTGCTCCAAGTATGTTGTTACATCATTCTTACAAACAAATTTCCATTACAGAAAAGTCAGAGATATATTTGTATTCTTGTCCGCCTCAATTCTTGGTGACCGATGATGGGACAAATCCGGAGTTACAAGGGAGTTTCAAGAATGGGAAAAGAGTGATAAAGCTAGCATTGATGACTCTTATCTCTGCCACTTTATCTAGTGAAGCATTATCATTTGTGGTTGGAAGCCATAATTCATGTGAAGTTTGGAAAAATTTGAGAGTGAGATATGGTGTCTTTTCTAGATCTGCCGCTATGCAACTCCAAACAAACATATACAAAATTCAGAGAGGTAATGACACCATAGACAAGTATTTTCAGCATATCAAGGACATTACCGATCAATTAGCTTCGTTGGCATTCATATTCTTGATGAAGAGATTATTATCATTGCTGTCAATGGCCTTCTCTCGAGTACATGACTATCAAAATCGTGATCAAAGCTCAGATCACAACTTTGTCAATGAACAGATTGTGTTCTCTTTTACTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2

Protein Analysis

286

Amino Acids

32.95

Weight (kDa)

9.33

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018945)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0322551 RchiOBHm_Chr4g0408321
rosa_roxburghii Rroxscaffold_1G00075120
rosa_samantha Rh1DG171700 Rh2AG641800 Rh4CG157200
rosa_wichuraiana Rw1G039060 Rw2G048470 Rw4G015700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 445
AciI CCGC 3 cut(s) 291, 410, 618
AclWI GGATC 2 cut(s) 288, 301
AcsI RAATTY 4 cut(s) 203, 366, 580, 648
AcvI CACGTG 1 cut(s) 143
AfaI GTAC 1 cut(s) 783
AfiI CCNNNNNNNGG 2 cut(s) 199, 435
AflIII ACRYGT 1 cut(s) 140
AgsI TTSAA 2 cut(s) 215, 466
AluBI AGCT 8 cut(s) 11, 29, 126, 168, 329, 490, 716, 810
AluI AGCT 8 cut(s) 11, 29, 126, 168, 329, 490, 716, 810
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 2 cut(s) 288, 301
Ama87I CYCGRG 1 cut(s) 777
Aor13HI TCCGGA 1 cut(s) 445
AoxI GGCC 1 cut(s) 768
ApeKI GCWGC 2 cut(s) 168, 329
ApoI RAATTY 4 cut(s) 203, 366, 580, 648
ArsI GACNNNNNNTTYG 2 cut(s) 18, 50
AsuHPI GGTGA 3 cut(s) 142, 180, 436
AsuNHI GCTAGC 1 cut(s) 490
AvaI CYCGRG 1 cut(s) 777
AxyI CCTNAGG 1 cut(s) 57
BamHI GGATCC 1 cut(s) 293
BanII GRGCYC 1 cut(s) 13
BbrPI CACGTG 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 2 cut(s) 155, 316
BccI CCATC 1 cut(s) 428
BclI TGATCA 2 cut(s) 132, 802
BcoDI GTCTC 1 cut(s) 57
BfaI CTAG 3 cut(s) 491, 525, 609
BglII AGATCT 1 cut(s) 611
BisI GCNGC 3 cut(s) 169, 330, 618
BlsI GCNGC 3 cut(s) 170, 331, 619
BmeT110I CYCGRG 1 cut(s) 777
BmiI GGNNCC 1 cut(s) 295
BmtI GCTAGC 1 cut(s) 494
BoxI GACNNNNGTC 1 cut(s) 49
BsaAI YACGTR 1 cut(s) 143
BsaBI GATNNNNATC 1 cut(s) 751
BsaI GGTCTC 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 445
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 435
Bse1I ACTGG 1 cut(s) 98
Bse21I CCTNAGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 755
Bse8I GATNNNNATC 1 cut(s) 751
BseAI TCCGGA 1 cut(s) 445
BseJI GATNNNNATC 1 cut(s) 751
BseLI CCNNNNNNNGG 2 cut(s) 199, 435
BseMI GCAATG 1 cut(s) 755
BseMII CTCAG 2 cut(s) 48, 825
BseNI ACTGG 1 cut(s) 98
BseXI GCAGC 2 cut(s) 155, 316
BseYI CCCAGC 1 cut(s) 126
BshFI GGCC 1 cut(s) 770
BsiHKAI GWGCWC 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 777
BsiSI CCGG 1 cut(s) 446
BslFI GGGAC 2 cut(s) 95, 451
BslI CCNNNNNNNGG 2 cut(s) 199, 435
BsmAI GTCTC 1 cut(s) 57
BsmFI GGGAC 2 cut(s) 95, 451
BsmI GAATGC 1 cut(s) 725
BsnI GGCC 1 cut(s) 770
Bso31I GGTCTC 1 cut(s) 57
BsoBI CYCGRG 1 cut(s) 777
Bsp1286I GDGCHC 1 cut(s) 13
Bsp13I TCCGGA 1 cut(s) 445
Bsp143I GATC 6 cut(s) 132, 293, 611, 706, 802, 814
BspACI CCGC 3 cut(s) 291, 410, 618
BspANI GGCC 1 cut(s) 770
BspCNI CTCAG 2 cut(s) 49, 824
BspEI TCCGGA 1 cut(s) 445
BspHI TCATGA 1 cut(s) 857
BspLI GGNNCC 1 cut(s) 295
BspOI GCTAGC 1 cut(s) 494
BspPI GGATC 2 cut(s) 288, 301
BspTNI GGTCTC 1 cut(s) 57
BsrDI GCAATG 1 cut(s) 755
BsrI ACTGG 1 cut(s) 98
BssMI GATC 6 cut(s) 132, 293, 611, 706, 802, 814
Bst4CI ACNGT 1 cut(s) 48
Bst6I CTCTTC 1 cut(s) 737
BstBAI YACGTR 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 289, 492
BstDEI CTNAG 3 cut(s) 57, 72, 811
BstEII GGTNACC 1 cut(s) 424
BstKTI GATC 6 cut(s) 135, 296, 614, 709, 805, 817
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 6 cut(s) 132, 293, 611, 706, 802, 814
BstMWI GCNNNNNNNGC 2 cut(s) 177, 722
BstNSI RCATGY 1 cut(s) 291
BstPAI GACNNNNGTC 1 cut(s) 49
BstPI GGTNACC 1 cut(s) 424
BstV1I GCAGC 2 cut(s) 155, 316
BstX2I RGATCY 2 cut(s) 293, 611
BstYI RGATCY 2 cut(s) 293, 611
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 1 cut(s) 770
BtsIMutI CAGTG 1 cut(s) 53
Cac8I GCNNGC 2 cut(s) 289, 492
CciI TCATGA 1 cut(s) 857
Csp6I GTAC 1 cut(s) 782
CviAII CATG 6 cut(s) 15, 87, 288, 564, 785, 858
CviQI GTAC 1 cut(s) 782
DdeI CTNAG 3 cut(s) 57, 72, 811
DpnI GATC 6 cut(s) 134, 295, 613, 708, 804, 816
DpnII GATC 6 cut(s) 132, 293, 611, 706, 802, 814
Eam1104I CTCTTC 1 cut(s) 737
EarI CTCTTC 1 cut(s) 737
EciI GGCGGA 1 cut(s) 399
Ecl136II GAGCTC 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 11
Eco72I CACGTG 1 cut(s) 143
Eco81I CCTNAGG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 777
Eco91I GGTNACC 1 cut(s) 424
EcoICRI GAGCTC 1 cut(s) 11
EcoO65I GGTNACC 1 cut(s) 424
EcoRI GAATTC 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 13
FaeI CATG 6 cut(s) 18, 90, 291, 567, 788, 861
FaqI GGGAC 2 cut(s) 95, 451
FatI CATG 6 cut(s) 14, 86, 287, 563, 784, 857
FbaI TGATCA 2 cut(s) 132, 802
Fnu4HI GCNGC 3 cut(s) 169, 330, 618
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 3 cut(s) 169, 330, 618
FspBI CTAG 3 cut(s) 491, 525, 609
GluI GCNGC 3 cut(s) 169, 330, 618
GsaI CCCAGC 1 cut(s) 130
HaeIII GGCC 1 cut(s) 770
HapII CCGG 1 cut(s) 446
Hin1II CATG 6 cut(s) 18, 90, 291, 567, 788, 861
HinfI GANTC 3 cut(s) 83, 107, 502
HpaII CCGG 1 cut(s) 446
HphI GGTGA 3 cut(s) 142, 180, 436
Hpy188I TCNGA 5 cut(s) 137, 276, 388, 654, 814
Hpy188III TCNNGA 8 cut(s) 56, 446, 466, 609, 736, 777, 800, 858
HpyAV CCTTC 1 cut(s) 781
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 3 cut(s) 180, 244, 625
HpyF10VI GCNNNNNNNGC 2 cut(s) 177, 722
HpyF3I CTNAG 3 cut(s) 57, 72, 811
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 6 cut(s) 18, 90, 291, 567, 788, 861
Kpn2I TCCGGA 1 cut(s) 445
Ksp22I TGATCA 2 cut(s) 132, 802
Kzo9I GATC 6 cut(s) 132, 293, 611, 706, 802, 814
LmnI GCTCC 2 cut(s) 16, 337
LpnPI CCDG 4 cut(s) 69, 79, 112, 459
Lsp1109I GCAGC 2 cut(s) 155, 316
MaeI CTAG 3 cut(s) 491, 525, 609
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 5 cut(s) 20, 186, 345, 424, 450
MalI GATC 6 cut(s) 134, 295, 613, 708, 804, 816
MboI GATC 6 cut(s) 132, 293, 611, 706, 802, 814
MboII GAAGA 2 cut(s) 74, 754
MfeI CAATTG 1 cut(s) 101
MflI RGATCY 2 cut(s) 293, 611
MhlI GDGCHC 1 cut(s) 13
MlyI GAGTC 2 cut(s) 77, 496
MmeI TCCRAC 1 cut(s) 529
MnlI CCTC 4 cut(s) 52, 203, 423, 650
MroI TCCGGA 1 cut(s) 445
MspI CCGG 1 cut(s) 446
MunI CAATTG 1 cut(s) 101
Mva1269I GAATGC 1 cut(s) 725
MwoI GCNNNNNNNGC 2 cut(s) 177, 722
NdeII GATC 6 cut(s) 132, 293, 611, 706, 802, 814
NheI GCTAGC 1 cut(s) 490
NlaIII CATG 6 cut(s) 18, 90, 291, 567, 788, 861
NlaIV GGNNCC 1 cut(s) 295
NmuCI GTSAC 3 cut(s) 20, 186, 424
NspI RCATGY 1 cut(s) 291
PaeI GCATGC 1 cut(s) 291
PaeR7I CTCGAG 1 cut(s) 777
PagI TCATGA 1 cut(s) 857
PctI GAATGC 1 cut(s) 725
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 3 cut(s) 170, 331, 619
PleI GAGTC 2 cut(s) 77, 496
PmaCI CACGTG 1 cut(s) 143
PmlI CACGTG 1 cut(s) 143
PpsI GAGTC 2 cut(s) 77, 496
Ppu21I YACGTR 1 cut(s) 143
PshAI GACNNNNGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 13
PspCI CACGTG 1 cut(s) 143
PspEI GGTNACC 1 cut(s) 424
PspFI CCCAGC 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 295
PsuI RGATCY 2 cut(s) 293, 611
RsaI GTAC 1 cut(s) 783
RsaNI GTAC 1 cut(s) 782
SacI GAGCTC 1 cut(s) 13
SatI GCNGC 3 cut(s) 169, 330, 618
Sau3AI GATC 6 cut(s) 132, 293, 611, 706, 802, 814
SchI GAGTC 2 cut(s) 77, 496
SduI GDGCHC 1 cut(s) 13
Sfr274I CTCGAG 1 cut(s) 777
SlaI CTCGAG 1 cut(s) 777
SmlI CTYRAG 1 cut(s) 777
SmoI CTYRAG 1 cut(s) 777
SphI GCATGC 1 cut(s) 291
SsiI CCGC 3 cut(s) 291, 410, 618
SspMI CTAG 3 cut(s) 491, 525, 609
SstI GAGCTC 1 cut(s) 13
TaaI ACNGT 1 cut(s) 48
TaiI ACGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 778
TaqII GACCGA 1 cut(s) 443
TatI WGTACW 1 cut(s) 781
TauI GCSGC 1 cut(s) 620
TfiI GAWTC 1 cut(s) 107
TscAI CASTG 1 cut(s) 53
TseFI GTSAC 3 cut(s) 20, 186, 424
TseI GCWGC 2 cut(s) 168, 329
Tsp45I GTSAC 3 cut(s) 20, 186, 424
TspDTI ATGAA 7 cut(s) 99, 196, 552, 718, 755, 846, 846
TspRI CASTG 1 cut(s) 53
XapI RAATTY 4 cut(s) 203, 366, 580, 648
XbaI TCTAGA 1 cut(s) 608
XceI RCATGY 1 cut(s) 291
XhoI CTCGAG 1 cut(s) 777
XspI CTAG 3 cut(s) 491, 525, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.