Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0018945

Physical Location & Seq

Genomic Coordinates Reverse (-)

66636825 .. 66646088

Gene Structure 9264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G039060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCAAGAGCTCCATGTTGTGACAAAGCTAATGTCAAAAAAGGACAGTGGTCTCCTGAGGAAGATAAAGCTAAGTCTTGGGACTCATGGAACTGGTGGCAATTGGATTCATCTGCCACAAAAAGCTGGCTTTTAGATTCTTCAACAAGAATCAAGTTGACCACATTAAGGTTAAGCAATATCAGTATACCAAAGATACAAAACGAATTGCTTCTAAAAAGTCATGGTTCTCTTACGAATCTGCATCTTGTGCAATTTGCGATTGAAGATGAGCTATGCGACTCTCAGCTCCAATTTTCTCCAAACTGGGTGCCAATGGAAGATGGAGTGAAGAAATTAGAGGGTAATAAGCGAAATGCAGGGGAAGATCCCAAAGTGGGATTGAGGGATGTTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

132

Amino Acids

14.99

Weight (kDa)

6.72

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018945)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322551 RchiOBHm_Chr4g0408321
rosa_roxburghii	Rroxscaffold_1G00075120
rosa_samantha	Rh1DG171700 Rh2AG641800 Rh4CG157200
rosa_wichuraiana	Rw1G039060 Rw2G048470 Rw4G015700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	310
AccI	GTMKAC	1 cut(s)	187
AclWI	GGATC	1 cut(s)	362
AfiI	CCNNNNNNNGG	2 cut(s)	168, 377
AgsI	TTSAA	2 cut(s)	144, 266
AluBI	AGCT	6 cut(s)	11, 29, 71, 126, 274, 289
AluI	AGCT	6 cut(s)	11, 29, 71, 126, 274, 289
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	362
ArsI	GACNNNNNNTTYG	2 cut(s)	18, 50
Asp700I	GAANNNNTTC	1 cut(s)	210
AxyI	CCTNAGG	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	13
BccI	CCATC	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	312
BmrI	ACTGGG	1 cut(s)	316
BmsI	GCATC	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	316
BoxI	GACNNNNGTC	1 cut(s)	49
BsaI	GGTCTC	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 377
Bse1I	ACTGG	2 cut(s)	98, 311
Bse21I	CCTNAGG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	2 cut(s)	168, 377
BseMII	CTCAG	2 cut(s)	48, 299
BseNI	ACTGG	2 cut(s)	98, 311
BshNI	GGYRCC	1 cut(s)	310
BsiHKAI	GWGCWC	1 cut(s)	13
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	168, 377
BsmAI	GTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	367
BspCNI	CTCAG	2 cut(s)	49, 298
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	362
BspT107I	GGYRCC	1 cut(s)	310
BspTNI	GGTCTC	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	98, 311
BssMI	GATC	1 cut(s)	367
BssNAI	GTATAC	1 cut(s)	188
Bst1107I	GTATAC	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	3 cut(s)	57, 72, 285
BstF5I	GGATG	1 cut(s)	394
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstPAI	GACNNNNGTC	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BstZ17I	GTATAC	1 cut(s)	188
Bsu36I	CCTNAGG	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	394
BtsIMutI	CAGTG	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	128
CviAII	CATG	3 cut(s)	15, 87, 224
CviJI	RGCY	7 cut(s)	11, 29, 71, 126, 130, 274, 289
CviKI_1	RGCY	7 cut(s)	11, 29, 71, 126, 130, 274, 289
DdeI	CTNAG	3 cut(s)	57, 72, 285
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
Ecl136II	GAGCTC	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	11
Eco81I	CCTNAGG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	13
FaeI	CATG	3 cut(s)	18, 90, 227
FaiI	YATR	5 cut(s)	16, 88, 188, 225, 277
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	3 cut(s)	14, 86, 223
FblI	GTMKAC	1 cut(s)	187
FriOI	GRGCYC	1 cut(s)	13
Hin1II	CATG	3 cut(s)	18, 90, 227
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HinfI	GANTC	6 cut(s)	83, 107, 137, 150, 238, 281
Hpy166II	GTNNAC	2 cut(s)	159, 188
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	2 cut(s)	159, 188
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4V	TGCA	3 cut(s)	244, 253, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
HpyF3I	CTNAG	3 cut(s)	57, 72, 285
Hsp92II	CATG	3 cut(s)	18, 90, 227
Kzo9I	GATC	1 cut(s)	367
LmnI	GCTCC	2 cut(s)	16, 294
LpnPI	CCDG	5 cut(s)	69, 79, 112, 292, 345
LweI	GCATC	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	6 cut(s)	74, 132, 278, 332, 343, 377
MfeI	CAATTG	1 cut(s)	101
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	5 cut(s)	101, 206, 254, 293, 335
MlyI	GAGTC	2 cut(s)	77, 275
MnlI	CCTC	3 cut(s)	52, 334, 378
MroXI	GAANNNNTTC	1 cut(s)	210
MseI	TTAA	2 cut(s)	167, 173
MunI	CAATTG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	250
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	3 cut(s)	18, 90, 227
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	1 cut(s)	20
PdmI	GAANNNNTTC	1 cut(s)	210
PfeI	GAWTC	4 cut(s)	107, 137, 150, 238
PleI	GAGTC	2 cut(s)	77, 275
PpsI	GAGTC	2 cut(s)	77, 275
PshAI	GACNNNNGTC	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	367
SacI	GAGCTC	1 cut(s)	13
SaqAI	TTAA	2 cut(s)	167, 173
Sau3AI	GATC	1 cut(s)	367
SchI	GAGTC	2 cut(s)	77, 275
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	7 cut(s)	13, 31, 73, 128, 173, 276, 291
SfaNI	GCATC	1 cut(s)	253
Sse9I	AATT	5 cut(s)	101, 206, 254, 293, 335
SstI	GAGCTC	1 cut(s)	13
TaaI	ACNGT	1 cut(s)	48
TasI	AATT	5 cut(s)	101, 206, 254, 293, 335
TfiI	GAWTC	4 cut(s)	107, 137, 150, 238
Tru1I	TTAA	2 cut(s)	167, 173
Tru9I	TTAA	2 cut(s)	167, 173
TscAI	CASTG	1 cut(s)	53
TseFI	GTSAC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	99
TspGWI	ACGGA	1 cut(s)	384
TspRI	CASTG	1 cut(s)	53
XmiI	GTMKAC	1 cut(s)	187
XmnI	GAANNNNTTC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.