RchiOBHm_Chr1g0324891

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
12652402 .. 12655971
3570 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55469

Sequence Viewer

Length: 267 bp
ATGATCCAGTCGATAAAAGTGAAAAGCTGGAACGAGATGGGAAACAATGGGTTGATATGTGCTCTTCAAGGTGTTATGTACCCAGAGTGCATGATAATGTCCTGCTGCAAAAGTGGCTATGTGAGAATAATACAAAACGTTTTCTTTAGCATAATTTACCCCAACCTAACCCTGGCTGACCTGAATAAAGAACTGTTCAGTAATTGGTGCTACGGTAGGTATTCACAATCTGGTCAGTTCAAGTGTGTTTATTATACAAATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

10.19

Weight (kDa)

8.78

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020461)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0324891
rosa_multiflora Rmu_sc0001575.1_g000014
rosa_samantha Rh2AG433500 Rh5AG201700 Rh5BG199900 Rh5CG220200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 138
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 2 cut(s) 68, 241
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 1 cut(s) 27
AluI AGCT 1 cut(s) 27
Alw21I GWGCWC 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 1 cut(s) 92
BccI CCATC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 173
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 173
BmrFI CCNGG 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 171
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 7
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 7
BseXI GCAGC 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 3
BspQI GCTCTTC 1 cut(s) 69
BsrI ACTGG 1 cut(s) 7
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 1 cut(s) 3
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 2 cut(s) 195, 215
Bst6I CTCTTC 1 cut(s) 69
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 79
CviAII CATG 1 cut(s) 91
CviJI RGCY 3 cut(s) 27, 117, 176
CviKI_1 RGCY 3 cut(s) 27, 117, 176
CviQI GTAC 1 cut(s) 79
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 171
FaeI CATG 1 cut(s) 94
FaiI YATR 6 cut(s) 58, 77, 92, 120, 152, 255
FatI CATG 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 106
Fsp4HI GCNGC 1 cut(s) 106
GluI GCNGC 1 cut(s) 106
Hin1II CATG 1 cut(s) 94
HpyCH4III ACNGT 2 cut(s) 195, 215
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 90, 108
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 1 cut(s) 94
Kzo9I GATC 1 cut(s) 3
LguI GCTCTTC 1 cut(s) 69
LpnPI CCDG 8 cut(s) 13, 20, 96, 115, 158, 185, 194, 216
Lsp1109I GCAGC 1 cut(s) 92
MaeII ACGT 1 cut(s) 138
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 56
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 2 cut(s) 153, 202
MslI CAYNNNNRTG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 114
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 69
PkrI GCNGC 1 cut(s) 107
Psp1406I AACGTT 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 95
SapI GCTCTTC 1 cut(s) 69
SatI GCNGC 1 cut(s) 106
Sau3AI GATC 1 cut(s) 3
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 1 cut(s) 64
SetI ASST 6 cut(s) 29, 73, 141, 168, 183, 221
SmiMI CAYNNNNRTG 1 cut(s) 95
Sse9I AATT 2 cut(s) 153, 202
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 2 cut(s) 195, 215
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 11
TasI AATT 2 cut(s) 153, 202
TseI GCWGC 1 cut(s) 105
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.