Rh2AG433500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
64360750 .. 64363236
2487 bp
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UTR
Exon/CDS
Intron
Rh2AG433500.1

Sequence Viewer

Length: 192 bp
ATGGAGTCTCATAGCATACCTGGGATTGGATTGTCCCATCGGTGGTCTAGATCTTATGGAGGGGAAGACGGTGCTGGTTTCTATTCGGCGATGATGGTTATCGATTATCCTGTGGCAGCTGTTTGGGACAAGGATGTAGAATTAGGCAACACCTTAGAGCGTGCAGAGGTTGTTCCCATTATTGTAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

6.88

Weight (kDa)

4.59

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020461)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0324891
rosa_multiflora Rmu_sc0001575.1_g000014
rosa_samantha Rh2AG433500 Rh5AG201700 Rh5BG199900 Rh5CG220200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 26, 42
AjnI CCWGG 1 cut(s) 19
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 128
BccI CCATC 2 cut(s) 45, 88
BciT130I CCWGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 1 cut(s) 48
BglII AGATCT 1 cut(s) 50
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 21
BpiI GAAGAC 1 cut(s) 72
Bsa29I ATCGAT 1 cut(s) 102
BsaBI GATNNNNATC 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 20
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 42
Bse8I GATNNNNATC 1 cut(s) 98
BseBI CCWGG 1 cut(s) 21
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 139
BseJI GATNNNNATC 1 cut(s) 98
BseLI CCNNNNNNNGG 2 cut(s) 26, 42
BseXI GCAGC 1 cut(s) 128
BsgI GTGCAG 1 cut(s) 183
BshVI ATCGAT 1 cut(s) 102
BslFI GGGAC 2 cut(s) 19, 140
BslI CCNNNNNNNGG 2 cut(s) 26, 42
BsmAI GTCTC 1 cut(s) 12
BsmFI GGGAC 2 cut(s) 19, 140
Bsp143I GATC 1 cut(s) 50
BspDI ATCGAT 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 154
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 1 cut(s) 53
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 1 cut(s) 50
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 128
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
Bsu15I ATCGAT 1 cut(s) 102
BsuTUI ATCGAT 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 104
BtsCI GGATG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 162
ClaI ATCGAT 1 cut(s) 102
CviJI RGCY 1 cut(s) 119
CviKI_1 RGCY 1 cut(s) 119
DdeI CTNAG 1 cut(s) 154
DpnI GATC 1 cut(s) 52
DpnII GATC 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 19
FaiI YATR 3 cut(s) 12, 17, 57
FaqI GGGAC 2 cut(s) 19, 140
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 1 cut(s) 48
GluI GCNGC 1 cut(s) 117
HinfI GANTC 1 cut(s) 5
Hpy188III TCNNGA 1 cut(s) 48
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 154
Kzo9I GATC 1 cut(s) 50
LpnPI CCDG 4 cut(s) 6, 33, 60, 123
Lsp1109I GCAGC 1 cut(s) 128
MaeI CTAG 1 cut(s) 48
MalI GATC 1 cut(s) 52
MboI GATC 1 cut(s) 50
MboII GAAGA 1 cut(s) 77
MflI RGATCY 1 cut(s) 50
MluCI AATT 1 cut(s) 140
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 2 cut(s) 53, 160
MspA1I CMGCKG 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 21
MvaI CCWGG 1 cut(s) 21
NdeII GATC 1 cut(s) 50
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PsuI RGATCY 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 119
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 50
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 21
SetI ASST 4 cut(s) 22, 121, 155, 171
SgeI CNNG 7 cut(s) 32, 33, 60, 87, 122, 142, 173
Sse9I AATT 1 cut(s) 140
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 19
TaaI ACNGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 102
TasI AATT 1 cut(s) 140
TseI GCWGC 1 cut(s) 116
XbaI TCTAGA 1 cut(s) 47
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.