Rh5CG220200

Zeaxanthin epoxidase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
22394348 .. 22396450
2103 bp
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UTR
Exon/CDS
Intron
Rh5CG220200.1

Sequence Viewer

Length: 231 bp
ATGGCGTTAGGAGCAAAGCACATAGGATTTGAAGTACTACAAGTGTTTGAGAAGGATGTGAGTGTTGTGAAGGGGAGGACGTGCTTGAAGCCATTGATGAGATTGTGTGAAGCAGGTTGTGTTACTGGAAATAAGATCAATGGCTTTGCAGACGGCTCTCATTATCGGGGAGCCATAACTCTTGTTATGGAGACACAATACAAGCGCTCAAAAGTAACTTTTGTCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

76

Amino Acids

8.41

Weight (kDa)

9.37

Isoelectric Point (pI)

19.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020461)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0324891
rosa_multiflora Rmu_sc0001575.1_g000014
rosa_samantha Rh2AG433500 Rh5AG201700 Rh5BG199900 Rh5CG220200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 104
AccI GTMKAC 1 cut(s) 225
AfaI GTAC 1 cut(s) 36
AfeI AGCGCT 1 cut(s) 206
AgsI TTSAA 2 cut(s) 32, 88
AjiI CACGTC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 185
Aor51HI AGCGCT 1 cut(s) 206
AspLEI GCGC 1 cut(s) 207
BceAI ACGGC 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 185
BfoI RGCGCY 1 cut(s) 208
BfuAI ACCTGC 1 cut(s) 104
BmcAI AGTACT 1 cut(s) 36
BmgBI CACGTC 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 130
BseGI GGATG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 172
BspMI ACCTGC 1 cut(s) 104
BsrI ACTGG 1 cut(s) 130
BssMI GATC 1 cut(s) 135
BstF5I GGATG 1 cut(s) 61
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 1 cut(s) 138
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 1 cut(s) 135
BstMWI GCNNNNNNNGC 1 cut(s) 11
BtrI CACGTC 1 cut(s) 81
BtsCI GGATG 1 cut(s) 61
BveI ACCTGC 1 cut(s) 104
CfoI GCGC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 35
CviJI RGCY 4 cut(s) 91, 144, 156, 173
CviKI_1 RGCY 4 cut(s) 91, 144, 156, 173
CviQI GTAC 1 cut(s) 35
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
Eco47III AGCGCT 1 cut(s) 206
FaiI YATR 3 cut(s) 23, 176, 188
FblI GTMKAC 1 cut(s) 225
FokI GGATG 1 cut(s) 68
GlaI GCGC 1 cut(s) 206
HaeII RGCGCY 1 cut(s) 208
HhaI GCGC 1 cut(s) 207
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 226
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 46, 64
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 80
HspAI GCGC 1 cut(s) 205
Kzo9I GATC 1 cut(s) 135
LmnI GCTCC 2 cut(s) 11, 170
LpnPI CCDG 2 cut(s) 99, 111
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 2 cut(s) 121, 214
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MnlI CCTC 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 1 cut(s) 135
NlaIV GGNNCC 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 172
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
Sau3AI GATC 1 cut(s) 135
ScaI AGTACT 1 cut(s) 36
SetI ASST 2 cut(s) 83, 118
SgeI CNNG 8 cut(s) 53, 93, 97, 126, 138, 179, 194, 214
TaiI ACGT 1 cut(s) 83
TatI WGTACW 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 225
ZrmI AGTACT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.