RchiOBHm_Chr1g0325201

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
13169051 .. 13172811
3761 bp
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UTR
Exon/CDS
Intron
PRQ55494

Sequence Viewer

Length: 177 bp
ATGGCGGATCTCAGCCTCAGGTGTGAGATCTCATTCTTGCAGACGTTCTTGTGCATTGCCTTCGCTGCTTGTTTCACTGAGTTCTGTACCATTAAGTTGGACACCGCTACATTGGTGCACCTAAGTATAGGGGCTTATTGGGTACTATGGCTACCATTGCTAGAGAAGAAGGTTTAG

Protein Analysis

58

Amino Acids

6.6

Weight (kDa)

5.54

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021328)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0325201 RchiOBHm_Chr4g0397151
rosa_samantha Rh1AG199800 Rh1CG184800
rosa_wichuraiana Rw4G000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 105
AclWI GGATC 1 cut(s) 15
AfaI GTAC 2 cut(s) 88, 144
Alw21I GWGCWC 1 cut(s) 120
Alw44I GTGCAC 1 cut(s) 116
AlwI GGATC 1 cut(s) 15
ApaLI GTGCAC 1 cut(s) 116
ApeKI GCWGC 1 cut(s) 65
AxyI CCTNAGG 1 cut(s) 17
BaeGI GKGCMC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 52
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BfaI CTAG 1 cut(s) 161
BglII AGATCT 1 cut(s) 27
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bse21I CCTNAGG 1 cut(s) 17
Bse3DI GCAATG 2 cut(s) 54, 155
BseMI GCAATG 2 cut(s) 54, 155
BseMII CTCAG 3 cut(s) 25, 31, 69
BseSI GKGCMC 1 cut(s) 120
BseXI GCAGC 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 2 cut(s) 7, 27
BspACI CCGC 2 cut(s) 5, 105
BspCNI CTCAG 3 cut(s) 24, 30, 70
BspPI GGATC 1 cut(s) 15
BsrDI GCAATG 2 cut(s) 54, 155
BssMI GATC 2 cut(s) 7, 27
BstDEI CTNAG 4 cut(s) 11, 17, 78, 122
BstKTI GATC 2 cut(s) 10, 30
BstMBI GATC 2 cut(s) 7, 27
BstMWI GCNNNNNNNGC 2 cut(s) 65, 157
BstSLI GKGCMC 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 52
BstX2I RGATCY 2 cut(s) 7, 27
BstXI CCANNNNNNTGG 1 cut(s) 97
BstYI RGATCY 2 cut(s) 7, 27
Bsu36I CCTNAGG 1 cut(s) 17
BtsIMutI CAGTG 1 cut(s) 75
Csp6I GTAC 2 cut(s) 87, 143
CviJI RGCY 3 cut(s) 15, 134, 151
CviKI_1 RGCY 3 cut(s) 15, 134, 151
CviQI GTAC 2 cut(s) 87, 143
DdeI CTNAG 4 cut(s) 11, 17, 78, 122
DpnI GATC 2 cut(s) 9, 29
DpnII GATC 2 cut(s) 7, 27
EciI GGCGGA 1 cut(s) 20
Eco81I CCTNAGG 1 cut(s) 17
FaiI YATR 2 cut(s) 128, 148
Fnu4HI GCNGC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 1 cut(s) 161
GluI GCNGC 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 118
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 2 cut(s) 70, 163
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 3 cut(s) 40, 54, 118
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 157
HpyF3I CTNAG 4 cut(s) 11, 17, 78, 122
HpySE526I ACGT 1 cut(s) 44
Kzo9I GATC 2 cut(s) 7, 27
LpnPI CCDG 1 cut(s) 4
Lsp1109I GCAGC 1 cut(s) 52
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 44
MalI GATC 2 cut(s) 9, 29
MboI GATC 2 cut(s) 7, 27
MflI RGATCY 2 cut(s) 7, 27
MhlI GDGCHC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 1 cut(s) 26
MseI TTAA 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 65, 157
NdeII GATC 2 cut(s) 7, 27
PkrI GCNGC 1 cut(s) 67
PsuI RGATCY 2 cut(s) 7, 27
RsaI GTAC 2 cut(s) 88, 144
RsaNI GTAC 2 cut(s) 87, 143
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 2 cut(s) 7, 27
SduI GDGCHC 1 cut(s) 120
SetI ASST 4 cut(s) 23, 47, 123, 174
SgeI CNNG 5 cut(s) 31, 49, 61, 81, 173
SsiI CCGC 2 cut(s) 5, 105
SspMI CTAG 1 cut(s) 161
TaiI ACGT 1 cut(s) 47
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 82
TseI GCWGC 1 cut(s) 65
TspRI CASTG 1 cut(s) 82
VneI GTGCAC 1 cut(s) 116
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.