Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0021328

Physical Location & Seq

Genomic Coordinates Reverse (-)

42832 .. 55642

Gene Structure 12811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G000020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGTGGACCTCAGCCCCAGGTGTGAGATCTCATTCTTGCAGACGTTCTTGTGCAGTGCCTTCGCTGCTTGTTTCACTGAGTTCTGTACCATTAAGTTGGACACCGCTACAGTGCTAGAGGTGATGCAGTTGGTGCACCTAAGTAGAGGGGCTTATTGGGTACTATGGCTACCATTGCTAGAGATCGAAGAAGGTTTAGCAGCACTTTGGAATGGTATAATTCCAGGGTTACAACGACAATGCATCTATAGAGGCTTAAGAATTGGGTTATATGATATTATTCTTTCTGCTTTTGTTGGAGATATTCCTATATACCATAAAGTGCTTGCTGCACTATTAACTGATGCTTTAGCTATCGTAGTGGCTAATCCAACAGACCTTGTAAAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0006950 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1902600 GO:1903825 GO:1905039 GO:1990542 GO:1990845

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

129

Amino Acids

14.33

Weight (kDa)

4.94

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	10 - 99	3.6e-09	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021328)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0325201 RchiOBHm_Chr4g0397151
rosa_samantha	Rh1AG199800 Rh1CG184800
rosa_wichuraiana	Rw4G000020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	105
AfaI	GTAC	2 cut(s)	88, 162
AflII	CTTAAG	1 cut(s)	256
AjnI	CCWGG	2 cut(s)	17, 223
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
Alw21I	GWGCWC	1 cut(s)	138
Alw44I	GTGCAC	1 cut(s)	134
ApaLI	GTGCAC	1 cut(s)	134
ApeKI	GCWGC	3 cut(s)	65, 200, 329
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	138
BbvCI	CCTCAGC	1 cut(s)	11
BbvI	GCAGC	3 cut(s)	52, 212, 316
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	2 cut(s)	19, 225
BfaI	CTAG	2 cut(s)	116, 179
BfmI	CTRYAG	2 cut(s)	108, 247
BfrI	CTTAAG	1 cut(s)	256
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	3 cut(s)	66, 201, 330
BlsI	GCNGC	3 cut(s)	67, 202, 331
Bme1390I	CCNGG	2 cut(s)	19, 225
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmrFI	CCNGG	2 cut(s)	19, 225
BmsI	GCATC	3 cut(s)	114, 252, 334
Bpu10I	CCTNAGC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	17, 224
Bse3DI	GCAATG	1 cut(s)	173
BseBI	CCWGG	2 cut(s)	19, 225
BseDI	CCNNGG	2 cut(s)	17, 224
BseMI	GCAATG	1 cut(s)	173
BseMII	CTCAG	2 cut(s)	25, 69
BseSI	GKGCMC	1 cut(s)	138
BseXI	GCAGC	3 cut(s)	52, 212, 316
BsgI	GTGCAG	2 cut(s)	73, 315
BsiHKAI	GWGCWC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	27, 183
BspACI	CCGC	1 cut(s)	105
BspCNI	CTCAG	2 cut(s)	24, 70
BspTI	CTTAAG	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	173
BssECI	CCNNGG	2 cut(s)	17, 224
BssMI	GATC	2 cut(s)	27, 183
Bst2UI	CCWGG	2 cut(s)	19, 225
Bst4CI	ACNGT	1 cut(s)	112
BstAFI	CTTAAG	1 cut(s)	256
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	3 cut(s)	11, 78, 140
BstKTI	GATC	2 cut(s)	30, 186
BstMBI	GATC	2 cut(s)	27, 183
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 133, 175
BstNI	CCWGG	2 cut(s)	19, 225
BstSCI	CCNGG	2 cut(s)	17, 223
BstSFI	CTRYAG	2 cut(s)	108, 247
BstSLI	GKGCMC	1 cut(s)	138
BstV1I	GCAGC	3 cut(s)	52, 212, 316
BstX2I	RGATCY	1 cut(s)	27
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	27
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	3 cut(s)	61, 75, 117
Cac8I	GCNNGC	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	7
Csp6I	GTAC	2 cut(s)	87, 161
CviJI	RGCY	6 cut(s)	15, 152, 169, 255, 353, 365
CviKI_1	RGCY	6 cut(s)	15, 152, 169, 255, 353, 365
CviQI	GTAC	2 cut(s)	87, 161
DdeI	CTNAG	3 cut(s)	11, 78, 140
DpnI	GATC	2 cut(s)	29, 185
DpnII	GATC	2 cut(s)	27, 183
Eco47I	GGWCC	1 cut(s)	7
EcoRII	CCWGG	2 cut(s)	17, 223
EcoT22I	ATGCAT	1 cut(s)	245
FaiI	YATR	8 cut(s)	166, 218, 249, 271, 273, 311, 313, 318
Fnu4HI	GCNGC	3 cut(s)	66, 201, 330
Fsp4HI	GCNGC	3 cut(s)	66, 201, 330
FspBI	CTAG	2 cut(s)	116, 179
GluI	GCNGC	3 cut(s)	66, 201, 330
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	2 cut(s)	7, 136
Hpy8I	GTNNAC	2 cut(s)	7, 136
HpyAV	CCTTC	2 cut(s)	70, 185
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	6 cut(s)	40, 54, 127, 136, 243, 332
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 133, 175
HpyF3I	CTNAG	3 cut(s)	11, 78, 140
HpySE526I	ACGT	1 cut(s)	44
Kzo9I	GATC	2 cut(s)	27, 183
LpnPI	CCDG	4 cut(s)	4, 31, 210, 237
Lsp1109I	GCAGC	3 cut(s)	52, 212, 316
LweI	GCATC	3 cut(s)	114, 252, 334
MaeI	CTAG	2 cut(s)	116, 179
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	2 cut(s)	29, 185
MboI	GATC	2 cut(s)	27, 183
MboII	GAAGA	1 cut(s)	200
MflI	RGATCY	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	2 cut(s)	219, 261
MmeI	TCCRAC	2 cut(s)	78, 277
MnlI	CCTC	4 cut(s)	20, 112, 140, 245
Mph1103I	ATGCAT	1 cut(s)	245
MseI	TTAA	3 cut(s)	93, 257, 338
MspCI	CTTAAG	1 cut(s)	256
MspR9I	CCNGG	2 cut(s)	19, 225
MvaI	CCWGG	2 cut(s)	19, 225
MwoI	GCNNNNNNNGC	3 cut(s)	65, 133, 175
NdeII	GATC	2 cut(s)	27, 183
NsiI	ATGCAT	1 cut(s)	245
PkrI	GCNGC	3 cut(s)	67, 202, 331
Psp6I	CCWGG	2 cut(s)	17, 223
PspGI	CCWGG	2 cut(s)	17, 223
PspPI	GGNCC	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	27
RsaI	GTAC	2 cut(s)	88, 162
RsaNI	GTAC	2 cut(s)	87, 161
SaqAI	TTAA	3 cut(s)	93, 257, 338
SatI	GCNGC	3 cut(s)	66, 201, 330
Sau3AI	GATC	2 cut(s)	27, 183
Sau96I	GGNCC	1 cut(s)	7
ScrFI	CCNGG	2 cut(s)	19, 225
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	8 cut(s)	12, 23, 47, 123, 141, 196, 355, 381
SfaNI	GCATC	3 cut(s)	114, 252, 334
SfcI	CTRYAG	2 cut(s)	108, 247
SinI	GGWCC	1 cut(s)	7
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	2 cut(s)	219, 261
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	2 cut(s)	116, 179
StyD4I	CCNGG	2 cut(s)	17, 223
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	219, 261
Tru1I	TTAA	3 cut(s)	93, 257, 338
Tru9I	TTAA	3 cut(s)	93, 257, 338
TscAI	CASTG	3 cut(s)	61, 82, 117
TseI	GCWGC	3 cut(s)	65, 200, 329
TspRI	CASTG	3 cut(s)	61, 82, 117
Vha464I	CTTAAG	1 cut(s)	256
VneI	GTGCAC	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	7
XspI	CTAG	2 cut(s)	116, 179
Zsp2I	ATGCAT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.