Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0021328

Physical Location & Seq

Genomic Coordinates Reverse (-)

38018187 .. 38020343

Gene Structure 2157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG199800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGTGGACCTCAGCCCCAGGTGTGAGATCTCATTCTTGCAGACGTTCTTGTGCAGTGCCTTCGCTGCTTGTTTCACTGAGTTCTGTACCATTAAGTTGGACACCGCTACAGTGCTAGAGGTGATGCAGTTGGTGCACCTAAGTAGAGGGGCTTATTGGGTCAAACTTTTCTTGTTTGGTAGTGCTTTTGTTGGAGATATTCCTATATACCATAAAGTGCTTGCTGCACTATTAACTGATGCTCTAGCTATCGTAGTGGCTAATCCAACAGACCTTGTAAAGGTCTCTCCCTCAAAATTGACTAGCCTGGAATTAAGGCCACATGCTATTGAGAGTTGTTATCTGTCAAAATATCAGGTTTGGGAATATTTAGTGAAATGTTGCCTAAAGAGTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0006950 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1902600 GO:1903825 GO:1905039 GO:1990542 GO:1990845

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

132

Amino Acids

14.77

Weight (kDa)

6.87

Isoelectric Point (pI)

32.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021328)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0325201 RchiOBHm_Chr4g0397151
rosa_samantha	Rh1AG199800 Rh1CG184800
rosa_wichuraiana	Rw4G000020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	105
AfaI	GTAC	1 cut(s)	88
AfiI	CCNNNNNNNGG	1 cut(s)	280
AjnI	CCWGG	2 cut(s)	17, 306
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	289
Alw44I	GTGCAC	1 cut(s)	134
AoxI	GGCC	1 cut(s)	317
ApaLI	GTGCAC	1 cut(s)	134
ApeKI	GCWGC	2 cut(s)	65, 224
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	138
BbvCI	CCTCAGC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	52, 211
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	2 cut(s)	19, 308
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	3 cut(s)	116, 245, 303
BfmI	CTRYAG	1 cut(s)	108
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	2 cut(s)	66, 225
BlsI	GCNGC	2 cut(s)	67, 226
Bme1390I	CCNGG	2 cut(s)	19, 308
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmrFI	CCNGG	2 cut(s)	19, 308
BmsI	GCATC	2 cut(s)	114, 229
Bpu10I	CCTNAGC	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	289
BsaJI	CCNNGG	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
BseBI	CCWGG	2 cut(s)	19, 308
BseDI	CCNNGG	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMII	CTCAG	2 cut(s)	25, 69
BseSI	GKGCMC	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	52, 211
BsgI	GTGCAG	2 cut(s)	73, 210
BshFI	GGCC	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	319
Bso31I	GGTCTC	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	27
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	1 cut(s)	319
BspCNI	CTCAG	2 cut(s)	24, 70
BspTNI	GGTCTC	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	1 cut(s)	27
Bst2UI	CCWGG	2 cut(s)	19, 308
Bst4CI	ACNGT	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	3 cut(s)	11, 78, 140
BstENI	CCTNNNNNAGG	1 cut(s)	278
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 133
BstNI	CCWGG	2 cut(s)	19, 308
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	2 cut(s)	17, 306
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	52, 211
BstX2I	RGATCY	1 cut(s)	27
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	319
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	3 cut(s)	61, 75, 117
Cac8I	GCNNGC	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	1 cut(s)	323
CviJI	RGCY	6 cut(s)	15, 152, 248, 260, 306, 319
CviKI_1	RGCY	6 cut(s)	15, 152, 248, 260, 306, 319
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	3 cut(s)	11, 78, 140
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
Eco31I	GGTCTC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	7
EcoNI	CCTNNNNNAGG	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	17, 306
FaeI	CATG	1 cut(s)	326
FaiI	YATR	4 cut(s)	206, 208, 213, 324
FatI	CATG	1 cut(s)	322
Fnu4HI	GCNGC	2 cut(s)	66, 225
Fsp4HI	GCNGC	2 cut(s)	66, 225
FspBI	CTAG	3 cut(s)	116, 245, 303
GluI	GCNGC	2 cut(s)	66, 225
HaeIII	GGCC	1 cut(s)	319
Hin1II	CATG	1 cut(s)	326
HinfI	GANTC	1 cut(s)	391
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	2 cut(s)	7, 136
Hpy8I	GTNNAC	2 cut(s)	7, 136
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	5 cut(s)	40, 54, 127, 136, 227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 133
HpyF3I	CTNAG	3 cut(s)	11, 78, 140
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	1 cut(s)	326
Kzo9I	GATC	1 cut(s)	27
LpnPI	CCDG	5 cut(s)	4, 31, 293, 320, 341
Lsp1109I	GCAGC	2 cut(s)	52, 211
LweI	GCATC	2 cut(s)	114, 229
MaeI	CTAG	3 cut(s)	116, 245, 303
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MflI	RGATCY	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	2 cut(s)	296, 311
MmeI	TCCRAC	3 cut(s)	78, 172, 290
MnlI	CCTC	4 cut(s)	20, 112, 140, 301
MseI	TTAA	3 cut(s)	93, 233, 314
MspR9I	CCNGG	2 cut(s)	19, 308
MvaI	CCWGG	2 cut(s)	19, 308
MwoI	GCNNNNNNNGC	2 cut(s)	65, 133
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	1 cut(s)	326
NmuCI	GTSAC	1 cut(s)	392
NspI	RCATGY	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	67, 226
Psp6I	CCWGG	2 cut(s)	17, 306
PspGI	CCWGG	2 cut(s)	17, 306
PspPI	GGNCC	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	27
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SaqAI	TTAA	3 cut(s)	93, 233, 314
SatI	GCNGC	2 cut(s)	66, 225
Sau3AI	GATC	1 cut(s)	27
Sau96I	GGNCC	1 cut(s)	7
ScrFI	CCNGG	2 cut(s)	19, 308
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	9 cut(s)	12, 23, 47, 123, 141, 250, 276, 285, 360
SfaNI	GCATC	2 cut(s)	114, 229
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	7
Sse9I	AATT	2 cut(s)	296, 311
SsiI	CCGC	1 cut(s)	105
SspI	AATATT	1 cut(s)	368
SspMI	CTAG	3 cut(s)	116, 245, 303
StyD4I	CCNGG	2 cut(s)	17, 306
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	47
TasI	AATT	2 cut(s)	296, 311
Tru1I	TTAA	3 cut(s)	93, 233, 314
Tru9I	TTAA	3 cut(s)	93, 233, 314
TscAI	CASTG	3 cut(s)	61, 82, 117
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	2 cut(s)	65, 224
Tsp45I	GTSAC	1 cut(s)	392
TspRI	CASTG	3 cut(s)	61, 82, 117
VneI	GTGCAC	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	7
XagI	CCTNNNNNAGG	1 cut(s)	278
XceI	RCATGY	1 cut(s)	326
XspI	CTAG	3 cut(s)	116, 245, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.