Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021328

Physical Location & Seq

Genomic Coordinates Forward (+)

13523649 .. 13527916

Gene Structure 4268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36948

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGCGGATCTCAGCCCCAGGTGTGAGATCTCATTCTTGCAGACGTTCTTGTGCAGTGCCTTCGCTGCTTGTTTCACTGAGTTCTGTACCATTAAGTTGGACACCGCTACAGTGCTAAAGGTGATGCAGTTGGTGCACCTAAGTAAAGGGGCTTATTGGGTACTATGGCTACCATTGCTAGAGAAGAAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0006950 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1902600 GO:1903825 GO:1905039 GO:1990542 GO:1990845

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

64

Amino Acids

7.27

Weight (kDa)

7.66

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021328)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0325201 RchiOBHm_Chr4g0397151
rosa_samantha	Rh1AG199800 Rh1CG184800
rosa_wichuraiana	Rw4G000020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 105
AclWI	GGATC	1 cut(s)	15
AfaI	GTAC	2 cut(s)	88, 162
AjnI	CCWGG	1 cut(s)	17
Alw21I	GWGCWC	1 cut(s)	138
Alw44I	GTGCAC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	15
ApaLI	GTGCAC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	52
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	1 cut(s)	19
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	108
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	19
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	17
Bse3DI	GCAATG	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	173
BseMII	CTCAG	2 cut(s)	25, 69
BseSI	GKGCMC	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	52
BsgI	GTGCAG	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	7, 27
BspACI	CCGC	2 cut(s)	5, 105
BspCNI	CTCAG	2 cut(s)	24, 70
BspPI	GGATC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	2 cut(s)	7, 27
Bst2UI	CCWGG	1 cut(s)	19
Bst4CI	ACNGT	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstDEI	CTNAG	3 cut(s)	11, 78, 140
BstKTI	GATC	2 cut(s)	10, 30
BstMBI	GATC	2 cut(s)	7, 27
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 133, 175
BstNI	CCWGG	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	17
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	52
BstX2I	RGATCY	2 cut(s)	7, 27
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstYI	RGATCY	2 cut(s)	7, 27
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	3 cut(s)	61, 75, 117
Csp6I	GTAC	2 cut(s)	87, 161
CviJI	RGCY	3 cut(s)	15, 152, 169
CviKI_1	RGCY	3 cut(s)	15, 152, 169
CviQI	GTAC	2 cut(s)	87, 161
DdeI	CTNAG	3 cut(s)	11, 78, 140
DpnI	GATC	2 cut(s)	9, 29
DpnII	GATC	2 cut(s)	7, 27
EciI	GGCGGA	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	17
FaiI	YATR	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	1 cut(s)	66
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	2 cut(s)	70, 181
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	4 cut(s)	40, 54, 127, 136
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 133, 175
HpyF3I	CTNAG	3 cut(s)	11, 78, 140
HpySE526I	ACGT	1 cut(s)	44
Kzo9I	GATC	2 cut(s)	7, 27
LpnPI	CCDG	2 cut(s)	4, 31
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	1 cut(s)	44
MalI	GATC	2 cut(s)	9, 29
MboI	GATC	2 cut(s)	7, 27
MflI	RGATCY	2 cut(s)	7, 27
MhlI	GDGCHC	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	78
MseI	TTAA	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	19
MwoI	GCNNNNNNNGC	3 cut(s)	65, 133, 175
NdeII	GATC	2 cut(s)	7, 27
PkrI	GCNGC	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	17
PsuI	RGATCY	2 cut(s)	7, 27
RsaI	GTAC	2 cut(s)	88, 162
RsaNI	GTAC	2 cut(s)	87, 161
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	2 cut(s)	7, 27
ScrFI	CCNGG	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	5 cut(s)	23, 47, 123, 141, 192
SfaNI	GCATC	1 cut(s)	114
SfcI	CTRYAG	1 cut(s)	108
SgeI	CNNG	6 cut(s)	30, 31, 49, 61, 81, 191
SsiI	CCGC	2 cut(s)	5, 105
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	3 cut(s)	61, 82, 117
TseI	GCWGC	1 cut(s)	65
TspRI	CASTG	3 cut(s)	61, 82, 117
VneI	GTGCAC	1 cut(s)	134
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.