RchiOBHm_Chr1g0325571

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0022620
Physical Location & Seq
Forward (+)
13546750 .. 13547808
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55528

Sequence Viewer

Length: 426 bp
ATGGCGCCACTCGGCTGGAGCGGTCTTCCAGCGATTTCGGCGACTCGGCCTACTAGATCTCTGTCTCCGGCGGTAATTTCAAAAACTATTTTAAATTACGATGCCAGTTTTGAATCACAGATTTTGATGACGATCACGATGATGATTGGGAATTCAAAGCTGCAAAACCAGAGAACTAGGTTGGCAACGAGAATTCCAAGTATGATGGAGGGTCAAATCCAGGAATCATTGTTCGTAGGCCTCAGGTTAAGGTACAATTTTAGCTTGGTTCAGAAACATATTCTACCAGCGGAGACAAGGGCATTCTTTTTTAGCATGGACATATTGAAGGACTTTATCACCAAACACAACTTTCCTAATGATGTCCCTGATGAACTTGTTGAAGACTGTTCTAACTGGATTATTGTAGATCCTCTTGTAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.97

Weight (kDa)

6.72

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022620)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0325571
rosa_laevigata RLG00000027061
rosa_samantha Rh1AG068700 Rh1CG069000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 21
AciI CCGC 3 cut(s) 21, 71, 290
AclWI GGATC 1 cut(s) 404
AcsI RAATTY 2 cut(s) 151, 192
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 254
AgsI TTSAA 5 cut(s) 81, 113, 156, 328, 383
AjnI CCWGG 1 cut(s) 219
AloI GAACNNNNNNTCC 2 cut(s) 215, 247
AluBI AGCT 2 cut(s) 160, 264
AluI AGCT 2 cut(s) 160, 264
Alw26I GTCTC 2 cut(s) 69, 287
AlwI GGATC 1 cut(s) 404
AoxI GGCC 2 cut(s) 47, 238
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 2 cut(s) 151, 192
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 331
AxyI CCTNAGG 1 cut(s) 242
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 2 cut(s) 17, 390
BbvI GCAGC 1 cut(s) 147
BccI CCATC 1 cut(s) 199
BciT130I CCWGG 1 cut(s) 221
BcoDI GTCTC 2 cut(s) 69, 287
BfaI CTAG 2 cut(s) 54, 177
BfoI RGCGCY 1 cut(s) 8
BglII AGATCT 1 cut(s) 56
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
Bme1390I CCNGG 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 221
BmsI GCATC 1 cut(s) 91
BpiI GAAGAC 2 cut(s) 17, 390
BpmI CTGGAG 1 cut(s) 37
BsaBI GATNNNNATC 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 5
Bse1I ACTGG 2 cut(s) 105, 401
Bse21I CCTNAGG 1 cut(s) 242
Bse8I GATNNNNATC 1 cut(s) 131
BseBI CCWGG 1 cut(s) 221
BseJI GATNNNNATC 1 cut(s) 131
BseMII CTCAG 1 cut(s) 256
BseNI ACTGG 2 cut(s) 105, 401
BseXI GCAGC 1 cut(s) 147
BshFI GGCC 2 cut(s) 49, 240
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 68
BslFI GGGAC 1 cut(s) 350
BsmAI GTCTC 2 cut(s) 69, 287
BsmFI GGGAC 1 cut(s) 350
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 2 cut(s) 49, 240
Bsp143I GATC 3 cut(s) 56, 132, 409
BspACI CCGC 3 cut(s) 21, 71, 290
BspANI GGCC 2 cut(s) 49, 240
BspCNI CTCAG 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 404
BspT107I GGYRCC 1 cut(s) 4
BsrBI CCGCTC 1 cut(s) 21
BsrI ACTGG 2 cut(s) 105, 401
BssMI GATC 3 cut(s) 56, 132, 409
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 389
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 1 cut(s) 242
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 59, 135, 412
BstMAI GTCTC 2 cut(s) 69, 287
BstMBI GATC 3 cut(s) 56, 132, 409
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 147
BstV2I GAAGAC 2 cut(s) 17, 390
BstX2I RGATCY 2 cut(s) 56, 409
BstXI CCANNNNNNTGG 1 cut(s) 15
BstYI RGATCY 2 cut(s) 56, 409
Bsu36I CCTNAGG 1 cut(s) 242
BsuRI GGCC 2 cut(s) 49, 240
CfoI GCGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 253
CviAII CATG 1 cut(s) 316
CviJI RGCY 5 cut(s) 15, 49, 160, 240, 264
CviKI_1 RGCY 5 cut(s) 15, 49, 160, 240, 264
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 1 cut(s) 242
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 58, 134, 411
DpnII GATC 3 cut(s) 56, 132, 409
DraI TTTAAA 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 240
Eco81I CCTNAGG 1 cut(s) 242
EcoRI GAATTC 2 cut(s) 151, 192
EcoRII CCWGG 1 cut(s) 219
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 1 cut(s) 319
FaiI YATR 5 cut(s) 203, 279, 317, 323, 424
FaqI GGGAC 1 cut(s) 350
FatI CATG 1 cut(s) 315
Fnu4HI GCNGC 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 161
FspBI CTAG 2 cut(s) 54, 177
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 161
GsuI CTGGAG 1 cut(s) 37
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 49, 240
HapII CCGG 1 cut(s) 68
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 319
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 3 cut(s) 43, 113, 224
HpaII CCGG 1 cut(s) 68
HphI GGTGA 1 cut(s) 331
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 1 cut(s) 136
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4V TGCA 1 cut(s) 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 242
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 319
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 3 cut(s) 56, 132, 409
LmnI GCTCC 1 cut(s) 18
Lsp1109I GCAGC 1 cut(s) 147
LweI GCATC 1 cut(s) 91
MaeI CTAG 2 cut(s) 54, 177
MalI GATC 3 cut(s) 58, 134, 411
MbiI CCGCTC 1 cut(s) 21
MboI GATC 3 cut(s) 56, 132, 409
MboII GAAGA 2 cut(s) 17, 395
MflI RGATCY 2 cut(s) 56, 409
MluCI AATT 5 cut(s) 75, 94, 151, 192, 256
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 37
MnlI CCTC 3 cut(s) 202, 251, 423
MseI TTAA 2 cut(s) 92, 248
MslI CAYNNNNRTG 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 221
Mva1269I GAATGC 1 cut(s) 302
MvaI CCWGG 1 cut(s) 221
MwoI GCNNNNNNNGC 1 cut(s) 38
NarI GGCGCC 1 cut(s) 5
NdeII GATC 3 cut(s) 56, 132, 409
NlaIII CATG 1 cut(s) 319
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 25
PceI AGGCCT 1 cut(s) 240
PctI GAATGC 1 cut(s) 302
PfeI GAWTC 2 cut(s) 113, 224
PfoI TCCNGGA 1 cut(s) 219
PkrI GCNGC 1 cut(s) 162
PleI GAGTC 1 cut(s) 37
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 2 cut(s) 56, 409
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 2 cut(s) 92, 248
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 3 cut(s) 56, 132, 409
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 221
SetI ASST 5 cut(s) 162, 182, 248, 254, 266
SfaNI GCATC 1 cut(s) 91
SfoI GGCGCC 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 140
Sse9I AATT 5 cut(s) 75, 94, 151, 192, 256
SseBI AGGCCT 1 cut(s) 240
SsiI CCGC 3 cut(s) 21, 71, 290
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 54, 177
StuI AGGCCT 1 cut(s) 240
StyD4I CCNGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 389
TasI AATT 5 cut(s) 75, 94, 151, 192, 256
TfiI GAWTC 2 cut(s) 113, 224
Tru1I TTAA 2 cut(s) 92, 248
Tru9I TTAA 2 cut(s) 92, 248
TseI GCWGC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 387
XapI RAATTY 2 cut(s) 151, 192
XspI CTAG 2 cut(s) 54, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.