Rh1CG069000

Protein of unknown function, DUF547

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0022620
Physical Location & Seq
Reverse (-)
14269319 .. 14293741
24423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG069000.1

Sequence Viewer

Length: 765 bp
ATGTGGTTGCGGCCATTTGTGTTGCTTTGCGCTCTATTTGGAAAGGATCAAGGAACAGAAGCTAGGTTGGTTAGTTTGGTTCTGGCTATTGACTGGGGCTTCACTATTCTGTACAGACTAATGGTAGATGCATACCTAAAGATTAATTGGGGCTGCCGCTACGGCTTTAAGTTATCAGCACATATCATACGATGCTACGATCGAAGACTCACTCCCAAAGAAGAACATCTTGGAACTTATTTCTCTGATCATGTTCCAGAATCACCAAATTGCCTTTTTGAAGAAATGATCAAGTGCATTTCAGCAATATATTGTGAACTTGCAGACCGGCCTATTGTCAATAACGGTAGTTCCCCAATTGACGTCAACGCCTTGGAAAAAAACCCCTCTCTATTCTGCCTTGTCCTGACCCCAGCAGCTGCCATGAGAGAAACTATTTACTCCATGTCTTGCACTATCACCGGTTGTTGTCTAATTGTGTCTTTGTTGGATTGCCTGTGCTGCAATATGATGGAGGTTCAAATCCAGGAATCATTGTTCATAGGCCTCAAGTTAAGGTATAATTTTAGCTTGGTTCAGAAACATATTCTACCAGCGGAGACAAGGGCATTCTTTCTGAGCATGGACATATTGAAGGACTTTATCACCAAACACAACTTTCCTAATGATGTCTCTGATGAACTTGTTGAAGACTGTTCTAACTGGATTACTGTGGAATCAACTCGTGGTAGCATGGGATGGTTACTAACAGCTCAGTTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 FBA_1 Lzipper-MIP1

Protein Analysis

254

Amino Acids

28.96

Weight (kDa)

5.4

Isoelectric Point (pI)

35.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022620)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0325571
rosa_laevigata RLG00000027061
rosa_samantha Rh1AG068700 Rh1CG069000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 366
AciI CCGC 3 cut(s) 10, 157, 596
AclWI GGATC 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 11
AcyI GRCGYC 1 cut(s) 363
AfaI GTAC 1 cut(s) 113
AgeI ACCGGT 1 cut(s) 461
AgsI TTSAA 4 cut(s) 281, 521, 634, 689
AjnI CCWGG 1 cut(s) 525
AjuI GAANNNNNNNTTGG 2 cut(s) 213, 245
AloI GAACNNNNNNTCC 2 cut(s) 521, 553
AluBI AGCT 4 cut(s) 62, 419, 570, 752
AluI AGCT 4 cut(s) 62, 419, 570, 752
Alw26I GTCTC 2 cut(s) 593, 676
AlwI GGATC 1 cut(s) 54
AlwNI CAGNNNCTG 1 cut(s) 419
AoxI GGCC 3 cut(s) 11, 329, 544
ApeKI GCWGC 4 cut(s) 153, 416, 419, 501
AseI ATTAAT 1 cut(s) 144
AsiGI ACCGGT 1 cut(s) 461
AspLEI GCGC 1 cut(s) 32
AsuHPI GGTGA 3 cut(s) 255, 451, 637
BauI CACGAG 1 cut(s) 723
BbsI GAAGAC 2 cut(s) 211, 696
BbvI GCAGC 4 cut(s) 140, 406, 428, 488
BccI CCATC 2 cut(s) 505, 732
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 1 cut(s) 527
BclI TGATCA 2 cut(s) 247, 288
BcoDI GTCTC 2 cut(s) 593, 676
BfaI CTAG 1 cut(s) 63
BglI GCCNNNNNGGC 1 cut(s) 162
BisI GCNGC 6 cut(s) 11, 154, 157, 417, 420, 502
BlsI GCNGC 6 cut(s) 12, 155, 158, 418, 421, 503
Bme1390I CCNGG 1 cut(s) 527
BmrFI CCNGG 1 cut(s) 527
BmrI ACTGGG 1 cut(s) 103
BmsI GCATC 2 cut(s) 118, 182
BmuI ACTGGG 1 cut(s) 103
BpiI GAAGAC 2 cut(s) 211, 696
BpuEI CTTGAG 1 cut(s) 533
BsaHI GRCGYC 1 cut(s) 363
BsaJI CCNNGG 1 cut(s) 372
BsaWI WCCGGW 1 cut(s) 461
Bse118I RCCGGY 2 cut(s) 327, 461
Bse1I ACTGG 2 cut(s) 98, 707
BseBI CCWGG 1 cut(s) 527
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 1 cut(s) 743
BseMII CTCAG 1 cut(s) 608
BseNI ACTGG 2 cut(s) 98, 707
BseXI GCAGC 4 cut(s) 140, 406, 428, 488
BseYI CCCAGC 1 cut(s) 412
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 3 cut(s) 13, 331, 546
BshTI ACCGGT 1 cut(s) 461
BsiEI CGRYCG 1 cut(s) 202
BsiSI CCGG 2 cut(s) 328, 462
BsmAI GTCTC 2 cut(s) 593, 676
BsmI GAATGC 1 cut(s) 608
BsnI GGCC 3 cut(s) 13, 331, 546
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 4 cut(s) 46, 199, 247, 288
BspACI CCGC 3 cut(s) 10, 157, 596
BspANI GGCC 3 cut(s) 13, 331, 546
BspCNI CTCAG 1 cut(s) 609
BspPI GGATC 1 cut(s) 54
BsrFI RCCGGY 2 cut(s) 327, 461
BsrGI TGTACA 1 cut(s) 111
BsrI ACTGG 2 cut(s) 98, 707
BssAI RCCGGY 2 cut(s) 327, 461
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 4 cut(s) 46, 199, 247, 288
BssNI GRCGYC 1 cut(s) 363
BssSI CACGAG 1 cut(s) 723
BssT1I CCWWGG 1 cut(s) 372
Bst2BI CACGAG 1 cut(s) 723
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 3 cut(s) 347, 695, 712
BstACI GRCGYC 1 cut(s) 363
BstAUI TGTACA 1 cut(s) 111
BstDEI CTNAG 2 cut(s) 617, 753
BstF5I GGATG 1 cut(s) 743
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 4 cut(s) 49, 202, 250, 291
BstMAI GTCTC 2 cut(s) 593, 676
BstMBI GATC 4 cut(s) 46, 199, 247, 288
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 2 cut(s) 162, 501
BstNI CCWGG 1 cut(s) 527
BstSCI CCNGG 1 cut(s) 525
BstV1I GCAGC 4 cut(s) 140, 406, 428, 488
BstV2I GAAGAC 2 cut(s) 211, 696
BsuRI GGCC 3 cut(s) 13, 331, 546
BtsCI GGATG 1 cut(s) 743
CaiI CAGNNNCTG 1 cut(s) 419
CfoI GCGC 1 cut(s) 32
Cfr10I RCCGGY 2 cut(s) 327, 461
Csp6I GTAC 1 cut(s) 112
CspAI ACCGGT 1 cut(s) 461
CviAII CATG 5 cut(s) 251, 424, 445, 622, 733
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 2 cut(s) 617, 753
DpnI GATC 4 cut(s) 48, 201, 249, 290
DpnII GATC 4 cut(s) 46, 199, 247, 288
EaeI YGGCCR 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 372
Eco147I AGGCCT 1 cut(s) 546
EcoRII CCWGG 1 cut(s) 525
EcoT14I CCWWGG 1 cut(s) 372
EcoT22I ATGCAT 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 5 cut(s) 254, 427, 448, 625, 736
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FatI CATG 5 cut(s) 250, 423, 444, 621, 732
FbaI TGATCA 2 cut(s) 247, 288
Fnu4HI GCNGC 6 cut(s) 11, 154, 157, 417, 420, 502
FokI GGATG 1 cut(s) 750
Fsp4HI GCNGC 6 cut(s) 11, 154, 157, 417, 420, 502
FspBI CTAG 1 cut(s) 63
GlaI GCGC 1 cut(s) 31
GluI GCNGC 6 cut(s) 11, 154, 157, 417, 420, 502
GsaI CCCAGC 1 cut(s) 416
HaeIII GGCC 3 cut(s) 13, 331, 546
HapII CCGG 2 cut(s) 328, 462
HhaI GCGC 1 cut(s) 32
Hin1I GRCGYC 1 cut(s) 363
Hin1II CATG 5 cut(s) 254, 427, 448, 625, 736
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 4 cut(s) 207, 260, 530, 716
HpaII CCGG 2 cut(s) 328, 462
HphI GGTGA 3 cut(s) 255, 451, 637
Hpy166II GTNNAC 2 cut(s) 317, 367
Hpy188I TCNGA 4 cut(s) 247, 579, 618, 676
Hpy188III TCNNGA 2 cut(s) 257, 406
Hpy8I GTNNAC 2 cut(s) 317, 367
HpyAV CCTTC 1 cut(s) 628
HpyCH4III ACNGT 3 cut(s) 347, 695, 712
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 5 cut(s) 131, 297, 323, 453, 504
HpyF10VI GCNNNNNNNGC 2 cut(s) 162, 501
HpyF3I CTNAG 2 cut(s) 617, 753
HpySE526I ACGT 1 cut(s) 363
Hsp92I GRCGYC 1 cut(s) 363
Hsp92II CATG 5 cut(s) 254, 427, 448, 625, 736
HspAI GCGC 1 cut(s) 30
Ksp22I TGATCA 2 cut(s) 247, 288
Kzo9I GATC 4 cut(s) 46, 199, 247, 288
Lsp1109I GCAGC 4 cut(s) 140, 406, 428, 488
LweI GCATC 2 cut(s) 118, 182
MaeI CTAG 1 cut(s) 63
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 1 cut(s) 741
MalI GATC 4 cut(s) 48, 201, 249, 290
MboI GATC 4 cut(s) 46, 199, 247, 288
MboII GAAGA 4 cut(s) 216, 233, 293, 701
MfeI CAATTG 1 cut(s) 357
MluCI AATT 5 cut(s) 145, 268, 357, 474, 562
MlyI GAGTC 1 cut(s) 201
MmeI TCCRAC 1 cut(s) 468
MnlI CCTC 3 cut(s) 397, 508, 557
Mph1103I ATGCAT 1 cut(s) 133
MseI TTAA 3 cut(s) 144, 168, 554
MspA1I CMGCKG 2 cut(s) 419, 596
MspI CCGG 2 cut(s) 328, 462
MspR9I CCNGG 1 cut(s) 527
MunI CAATTG 1 cut(s) 357
Mva1269I GAATGC 1 cut(s) 608
MvaI CCWGG 1 cut(s) 527
MwoI GCNNNNNNNGC 2 cut(s) 162, 501
NdeII GATC 4 cut(s) 46, 199, 247, 288
NlaIII CATG 5 cut(s) 254, 427, 448, 625, 736
NsiI ATGCAT 1 cut(s) 133
PceI AGGCCT 1 cut(s) 546
PctI GAATGC 1 cut(s) 608
PfeI GAWTC 3 cut(s) 260, 530, 716
PfoI TCCNGGA 1 cut(s) 525
PinAI ACCGGT 1 cut(s) 461
PkrI GCNGC 6 cut(s) 12, 155, 158, 418, 421, 503
Ple19I CGATCG 1 cut(s) 202
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PshBI ATTAAT 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 525
PspFI CCCAGC 1 cut(s) 412
PspGI CCWGG 1 cut(s) 525
PstNI CAGNNNCTG 1 cut(s) 419
PvuI CGATCG 1 cut(s) 202
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SaqAI TTAA 3 cut(s) 144, 168, 554
SatI GCNGC 6 cut(s) 11, 154, 157, 417, 420, 502
Sau3AI GATC 4 cut(s) 46, 199, 247, 288
SchI GAGTC 1 cut(s) 201
ScrFI CCNGG 1 cut(s) 527
SetI ASST 9 cut(s) 64, 68, 138, 366, 421, 519, 560, 572, 754
SfaNI GCATC 2 cut(s) 118, 182
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
Sse9I AATT 5 cut(s) 145, 268, 357, 474, 562
SseBI AGGCCT 1 cut(s) 546
SsiI CCGC 3 cut(s) 10, 157, 596
SspMI CTAG 1 cut(s) 63
StuI AGGCCT 1 cut(s) 546
StyD4I CCNGG 1 cut(s) 525
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 3 cut(s) 347, 695, 712
TaiI ACGT 1 cut(s) 366
TaqI TCGA 1 cut(s) 202
TasI AATT 5 cut(s) 145, 268, 357, 474, 562
TatI WGTACW 1 cut(s) 111
TauI GCSGC 2 cut(s) 13, 159
TfiI GAWTC 3 cut(s) 260, 530, 716
Tru1I TTAA 3 cut(s) 144, 168, 554
Tru9I TTAA 3 cut(s) 144, 168, 554
TseI GCWGC 4 cut(s) 153, 416, 419, 501
TspDTI ATGAA 2 cut(s) 529, 693
VspI ATTAAT 1 cut(s) 144
XspI CTAG 1 cut(s) 63
ZraI GACGTC 1 cut(s) 364
Zsp2I ATGCAT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.